Wall clock time and date at job start Tue Mar 31 2020 01:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47156 * 2 1 4 4 C 1.50701 * 109.47488 * 120.00198 * 2 1 3 5 5 H 1.08002 * 120.00334 * 119.99384 * 4 2 1 6 6 C 1.37880 * 119.99914 * 300.00073 * 4 2 1 7 7 N 1.31518 * 119.99950 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00015 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47172 * 89.99938 * 8 6 4 10 10 H 1.48498 * 109.47263 * 210.00067 * 8 6 4 11 11 H 1.48506 * 109.47183 * 329.99761 * 8 6 4 12 12 N 1.46503 * 109.46888 * 240.00061 * 2 1 3 13 13 C 1.46501 * 120.00171 * 299.99869 * 12 2 1 14 14 C 1.34773 * 119.99715 * 119.99903 * 12 2 1 15 15 O 1.21606 * 120.00284 * 0.83664 * 14 12 2 16 16 C 1.47335 * 119.99706 * 180.83471 * 14 12 2 17 17 C 1.37941 * 125.88753 * 346.44763 * 16 14 12 18 18 C 1.39420 * 107.47350 * 180.02562 * 17 16 14 19 19 C 1.38010 * 107.45000 * 0.02562 * 18 17 16 20 20 C 1.47136 * 125.91382 * 179.97438 * 19 18 17 21 21 O 1.21531 * 120.00115 * 0.02642 * 20 19 18 22 22 O 1.34821 * 119.99924 * 180.29712 * 20 19 18 23 23 N 1.36716 * 125.88713 * 166.73786 * 16 14 12 24 24 C 1.46500 * 125.66373 * 359.97438 * 23 16 14 25 25 H 1.09005 * 109.46805 * 299.99386 * 1 2 3 26 26 H 1.08994 * 109.47500 * 59.99581 * 1 2 3 27 27 H 1.09005 * 109.47129 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00004 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46939 * 263.90406 * 13 12 2 30 30 H 1.09006 * 109.46662 * 23.90085 * 13 12 2 31 31 H 1.08996 * 109.47149 * 143.90181 * 13 12 2 32 32 H 1.07994 * 126.26583 * 0.02562 * 17 16 14 33 33 H 1.07994 * 126.27915 * 180.02562 * 18 17 16 34 34 H 0.96700 * 116.99753 * 179.72773 * 22 20 19 35 35 H 1.08999 * 109.46770 * 265.37090 * 24 23 16 36 36 H 1.09007 * 109.46759 * 25.36498 * 24 23 16 37 37 H 1.08989 * 109.46843 * 145.36500 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4122 10 1 1.3433 -0.9494 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0994 1.1241 -1.8833 16 6 3.2690 -0.7247 -3.2956 17 6 3.2255 -2.0846 -3.5224 18 6 3.7734 -2.3164 -4.7833 19 6 4.1428 -1.0934 -5.3052 20 6 4.7649 -0.8683 -6.6195 21 8 4.9958 -1.8103 -7.3519 22 8 5.0838 0.3824 -7.0090 23 7 3.8348 -0.1270 -4.3872 24 6 4.0697 1.3101 -4.5484 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7090 1.1613 3.4844 29 1 2.4682 -2.7351 -1.0676 30 1 0.7439 -2.3287 -0.8937 31 1 1.5176 -2.2593 -2.4953 32 1 2.8381 -2.8328 -2.8469 33 1 3.8877 -3.2769 -5.2636 34 1 5.4943 0.4800 -7.8791 35 1 3.2338 1.7567 -5.0868 36 1 4.1602 1.7757 -3.5669 37 1 4.9898 1.4669 -5.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:24 Heat of formation + Delta-G solvation = -54.742510 kcal Electronic energy + Delta-G solvation = -22104.620153 eV Core-core repulsion = 18656.057514 eV Total energy + Delta-G solvation = -3448.562639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65173 -39.90774 -38.56823 -36.34890 -35.61573 -33.40242 -32.45862 -30.47699 -28.83529 -27.05724 -26.05138 -25.28496 -24.61380 -22.07667 -20.76082 -19.84980 -18.86302 -18.25743 -17.22255 -16.64747 -16.18710 -15.89905 -15.68266 -15.11534 -14.63310 -14.21928 -14.03177 -13.86342 -13.40591 -13.18549 -12.81211 -12.61509 -12.50373 -12.29874 -11.89883 -11.75457 -11.61836 -11.13931 -11.05918 -10.93859 -10.79398 -10.67415 -10.29712 -10.21348 -9.30204 -9.20273 -8.80732 -8.48269 -8.36128 -7.72182 -6.12401 -4.20631 0.94332 2.15980 2.50038 2.87929 3.01593 3.25271 3.32072 3.33850 3.72696 3.84896 4.36172 4.75431 4.92097 4.95044 5.19507 5.30141 5.34053 5.46462 5.68490 5.77685 5.94253 5.99201 6.03552 6.19353 6.25863 6.55243 6.70239 6.75436 6.85701 6.96586 6.97734 7.31394 7.41604 7.64943 7.67441 7.93748 8.10427 8.37364 8.71193 8.88721 9.45979 10.93020 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.004078 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.106873 B = 6865.132526 C = 7114.986084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.066 0.934 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.569 5.569 13 C 0.063 3.937 14 C 0.568 3.432 15 O -0.553 6.553 16 C 0.024 3.976 17 C -0.186 4.186 18 C -0.108 4.108 19 C -0.038 4.038 20 C 0.558 3.442 21 O -0.509 6.509 22 O -0.516 6.516 23 N -0.382 5.382 24 C 0.055 3.945 25 H 0.096 0.904 26 H 0.012 0.988 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.155 0.845 34 H 0.413 0.587 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -3.387 -14.872 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.298 5.298 13 C -0.080 4.080 14 C 0.354 3.646 15 O -0.434 6.434 16 C -0.097 4.097 17 C -0.210 4.210 18 C -0.134 4.134 19 C -0.152 4.152 20 C 0.403 3.597 21 O -0.398 6.398 22 O -0.329 6.329 23 N -0.055 5.055 24 C -0.085 4.085 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.193 0.807 33 H 0.172 0.828 34 H 0.272 0.728 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.772 -2.551 -14.474 15.173 hybrid contribution 0.607 -0.433 0.233 0.781 sum 4.379 -2.984 -14.241 15.194 Atomic orbital electron populations 1.22114 0.97842 0.99635 1.01025 1.19064 0.91052 0.94553 0.79409 0.91656 1.21299 1.32021 1.13141 0.90093 0.92077 1.24886 0.94855 0.94967 0.98997 1.69872 1.36235 1.22592 1.23879 0.86466 0.78636 0.79913 0.82215 1.20603 1.21114 1.19825 1.48009 1.47149 1.11926 1.22747 1.22343 1.01657 0.82825 1.01155 1.17103 0.79843 0.85833 0.81817 1.90699 1.58616 1.16907 1.77160 1.20843 1.05088 0.92998 0.90757 1.22255 1.06161 0.94338 0.98237 1.21277 1.00949 0.95726 0.95484 1.19385 1.15138 0.89787 0.90846 1.19625 0.74789 0.80326 0.84942 1.90920 1.51834 1.43261 1.53748 1.84657 1.75057 1.31420 1.41769 1.43894 1.41872 1.07701 1.12007 1.22599 1.03113 0.76331 1.06463 0.88583 0.96859 0.94851 0.92611 0.92533 0.90382 0.90691 0.80658 0.82758 0.72777 0.90446 0.86565 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.96 37.16 0.33 -3.06 16 2 C 0.26 6.38 2.63 -69.08 -0.18 6.19 16 3 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -13.80 8.37 -34.44 -0.29 -14.09 16 5 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.57 -11.77 2.75 -176.57 -0.49 -12.26 16 13 C 0.06 1.01 7.93 59.85 0.47 1.49 16 14 C 0.57 11.65 7.64 -12.56 -0.10 11.56 16 15 O -0.55 -12.91 13.88 5.27 0.07 -12.83 16 16 C 0.02 0.41 6.68 -82.10 -0.55 -0.14 16 17 C -0.19 -2.62 8.64 -39.25 -0.34 -2.96 16 18 C -0.11 -1.44 10.61 -39.23 -0.42 -1.85 16 19 C -0.04 -0.54 6.87 -82.12 -0.56 -1.10 16 20 C 0.56 6.98 8.31 34.34 0.29 7.26 16 21 O -0.51 -7.36 17.66 -19.29 -0.34 -7.70 16 22 O -0.52 -4.61 10.91 -40.83 -0.45 -5.06 16 23 N -0.38 -5.79 3.17 -115.88 -0.37 -6.15 16 24 C 0.06 0.72 10.11 59.85 0.60 1.33 16 25 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.06 0.84 7.51 -51.93 -0.39 0.45 16 30 H 0.08 1.26 6.44 -51.93 -0.33 0.92 16 31 H 0.07 0.99 4.99 -51.93 -0.26 0.73 16 32 H 0.18 2.11 4.52 -52.49 -0.24 1.87 16 33 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.41 1.65 9.11 45.56 0.42 2.07 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.12 1.78 5.85 -51.93 -0.30 1.48 16 37 H 0.09 1.02 6.40 -51.94 -0.33 0.69 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -32.19 307.33 -5.42 -37.61 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.27 Total: 3.75 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.83 Total: 6.26 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -0.23 Total: -42.24 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.71 Total: -25.59 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.19 -5.42 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.130 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds