Wall clock time and date at job start Tue Mar 31 2020 01:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47156 * 2 1 4 4 C 1.50701 * 109.47488 * 120.00198 * 2 1 3 5 5 H 1.08002 * 120.00334 * 119.99384 * 4 2 1 6 6 C 1.37880 * 119.99914 * 300.00073 * 4 2 1 7 7 N 1.31518 * 119.99950 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00015 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47172 * 89.99938 * 8 6 4 10 10 H 1.48498 * 109.47263 * 210.00067 * 8 6 4 11 11 H 1.48506 * 109.47183 * 329.99761 * 8 6 4 12 12 N 1.46503 * 109.46888 * 240.00061 * 2 1 3 13 13 C 1.46501 * 120.00171 * 299.99869 * 12 2 1 14 14 C 1.34773 * 119.99715 * 119.99903 * 12 2 1 15 15 O 1.21606 * 120.00284 * 0.83664 * 14 12 2 16 16 C 1.47335 * 119.99706 * 180.83471 * 14 12 2 17 17 C 1.37941 * 125.88753 * 346.44763 * 16 14 12 18 18 C 1.39420 * 107.47350 * 180.02562 * 17 16 14 19 19 C 1.38010 * 107.45000 * 0.02562 * 18 17 16 20 20 C 1.47136 * 125.91382 * 179.97438 * 19 18 17 21 21 O 1.21531 * 120.00115 * 0.02642 * 20 19 18 22 22 O 1.34821 * 119.99924 * 180.29712 * 20 19 18 23 23 N 1.36716 * 125.88713 * 166.73786 * 16 14 12 24 24 C 1.46500 * 125.66373 * 359.97438 * 23 16 14 25 25 H 1.09005 * 109.46805 * 299.99386 * 1 2 3 26 26 H 1.08994 * 109.47500 * 59.99581 * 1 2 3 27 27 H 1.09005 * 109.47129 * 179.97438 * 1 2 3 28 28 H 0.96991 * 120.00004 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46939 * 263.90406 * 13 12 2 30 30 H 1.09006 * 109.46662 * 23.90085 * 13 12 2 31 31 H 1.08996 * 109.47149 * 143.90181 * 13 12 2 32 32 H 1.07994 * 126.26583 * 0.02562 * 17 16 14 33 33 H 1.07994 * 126.27915 * 180.02562 * 18 17 16 34 34 H 0.96700 * 116.99753 * 179.72773 * 22 20 19 35 35 H 1.08999 * 109.46770 * 265.37090 * 24 23 16 36 36 H 1.09007 * 109.46759 * 25.36498 * 24 23 16 37 37 H 1.08989 * 109.46843 * 145.36500 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4122 10 1 1.3433 -0.9494 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0994 1.1241 -1.8833 16 6 3.2690 -0.7247 -3.2956 17 6 3.2255 -2.0846 -3.5224 18 6 3.7734 -2.3164 -4.7833 19 6 4.1428 -1.0934 -5.3052 20 6 4.7649 -0.8683 -6.6195 21 8 4.9958 -1.8103 -7.3519 22 8 5.0838 0.3824 -7.0090 23 7 3.8348 -0.1270 -4.3872 24 6 4.0697 1.3101 -4.5484 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7090 1.1613 3.4844 29 1 2.4682 -2.7351 -1.0676 30 1 0.7439 -2.3287 -0.8937 31 1 1.5176 -2.2593 -2.4953 32 1 2.8381 -2.8328 -2.8469 33 1 3.8877 -3.2769 -5.2636 34 1 5.4943 0.4800 -7.8791 35 1 3.2338 1.7567 -5.0868 36 1 4.1602 1.7757 -3.5669 37 1 4.9898 1.4669 -5.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:24 Heat of formation + Delta-G solvation = -76.571192 kcal Electronic energy + Delta-G solvation = -22105.566716 eV Core-core repulsion = 18656.057514 eV Total energy + Delta-G solvation = -3449.509202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.79125 -40.96367 -40.02885 -37.34449 -37.17869 -35.09348 -33.78622 -32.03203 -30.29176 -28.32844 -27.32511 -27.21998 -25.84997 -23.43248 -22.13561 -21.04710 -20.26237 -19.20756 -18.49039 -18.30944 -17.47352 -17.29189 -17.21512 -16.41048 -16.30843 -15.55641 -15.22564 -15.07418 -14.71377 -14.43952 -14.22162 -14.09850 -13.94042 -13.49334 -13.35286 -13.02141 -12.93263 -12.76449 -12.69289 -12.63536 -12.23160 -12.10402 -12.08328 -11.87182 -11.18256 -10.84426 -10.50361 -9.90924 -9.59325 -9.32545 -8.13633 -6.29798 -0.17650 1.00035 1.37493 1.44331 1.46144 1.55607 1.97229 2.00674 2.26125 2.35377 2.50615 3.15150 3.51047 3.81581 3.90732 4.28248 4.33001 4.40967 4.46310 4.71853 4.73100 4.75695 4.89569 4.91153 4.97691 5.04793 5.09639 5.36156 5.45414 5.51885 5.64839 5.66471 5.75612 5.88126 6.02197 6.15313 6.70609 6.76882 6.88340 7.20716 7.43009 8.90845 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.004078 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.106873 B = 6865.132526 C = 7114.986084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.263 3.737 3 H 0.014 0.986 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.284 1.284 10 H -0.281 1.281 11 H -0.260 1.260 12 N -0.577 5.577 13 C 0.059 3.941 14 C 0.561 3.439 15 O -0.597 6.597 16 C -0.012 4.012 17 C -0.166 4.166 18 C -0.109 4.109 19 C -0.037 4.037 20 C 0.568 3.432 21 O -0.528 6.528 22 O -0.506 6.506 23 N -0.387 5.387 24 C 0.056 3.944 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.197 0.803 33 H 0.180 0.820 34 H 0.437 0.563 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -5.542 -16.324 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.162 3.838 3 H 0.032 0.968 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.306 5.306 13 C -0.082 4.082 14 C 0.349 3.651 15 O -0.481 6.481 16 C -0.131 4.131 17 C -0.190 4.190 18 C -0.135 4.135 19 C -0.151 4.151 20 C 0.413 3.587 21 O -0.418 6.418 22 O -0.321 6.321 23 N -0.060 5.060 24 C -0.083 4.083 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.214 0.786 33 H 0.197 0.803 34 H 0.300 0.700 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.370 -4.719 -15.961 17.208 hybrid contribution 0.484 0.301 0.550 0.792 sum 4.854 -4.418 -15.411 16.751 Atomic orbital electron populations 1.21903 0.96732 1.00482 1.00112 1.18651 0.91829 0.92341 0.80986 0.96829 1.21563 1.31980 1.13170 0.90909 0.91869 1.25698 0.95017 0.95618 1.01924 1.70012 1.37238 1.23870 1.24462 0.85468 0.77674 0.79347 0.78607 1.21017 1.20670 1.18414 1.47939 1.47313 1.13630 1.21706 1.22634 1.02047 0.80204 1.03329 1.17612 0.79183 0.85486 0.82772 1.90670 1.60149 1.18924 1.78307 1.20383 1.08309 0.93938 0.90484 1.22500 1.04616 0.93255 0.98648 1.21606 1.00311 0.96542 0.94998 1.19828 1.14155 0.89858 0.91245 1.19340 0.74286 0.80935 0.84150 1.90924 1.52651 1.44138 1.54095 1.84592 1.74650 1.29331 1.43576 1.44014 1.41748 1.08383 1.11846 1.22612 1.04729 0.75698 1.05308 0.91149 0.96047 0.92972 0.92625 0.91120 0.90461 0.87543 0.78637 0.80283 0.69951 0.89319 0.89343 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.96 71.98 0.64 -5.62 16 2 C 0.26 13.38 2.63 44.24 0.12 13.50 16 3 H 0.01 0.83 6.90 -2.39 -0.02 0.82 16 4 C -0.54 -28.50 8.37 25.60 0.21 -28.29 16 5 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -51.81 11.32 21.45 0.24 -51.57 16 8 Si 0.96 42.22 29.54 68.60 2.03 44.24 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 N -0.58 -24.05 2.75 -830.79 -2.29 -26.33 16 13 C 0.06 1.78 7.93 127.77 1.01 2.80 16 14 C 0.56 23.53 7.64 86.64 0.66 24.19 16 15 O -0.60 -29.43 13.88 -4.05 -0.06 -29.49 16 16 C -0.01 -0.38 6.68 40.71 0.27 -0.11 16 17 C -0.17 -4.23 8.64 22.48 0.19 -4.03 16 18 C -0.11 -2.54 10.61 22.50 0.24 -2.30 16 19 C -0.04 -0.94 6.87 40.65 0.28 -0.66 16 20 C 0.57 12.52 8.31 70.16 0.58 13.10 16 21 O -0.53 -13.69 17.66 19.73 0.35 -13.35 16 22 O -0.51 -7.42 10.91 -57.33 -0.63 -8.05 16 23 N -0.39 -11.25 3.17 -520.54 -1.65 -12.90 16 24 C 0.06 1.46 10.11 127.77 1.29 2.75 16 25 H 0.07 3.67 6.07 -2.38 -0.01 3.66 16 26 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 2.19 6.67 -2.38 -0.02 2.17 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.07 1.93 7.51 -2.39 -0.02 1.92 16 30 H 0.08 2.34 6.44 -2.38 -0.02 2.32 16 31 H 0.11 2.52 4.99 -2.39 -0.01 2.51 16 32 H 0.20 4.02 4.52 -2.91 -0.01 4.01 16 33 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.44 1.92 9.11 -74.06 -0.67 1.24 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 2.84 5.85 -2.38 -0.01 2.82 16 37 H 0.12 2.36 6.40 -2.39 -0.02 2.35 16 Total: -1.00 -71.77 307.33 4.41 -67.36 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.46 Total: 13.39 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 5.96 Total: 16.69 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -3.69 Total: -90.80 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.33 Total: -50.88 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -71.77 4.41 -67.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.213 kcal (2) G-P(sol) polarization free energy of solvation -71.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds