Wall clock time and date at job start Tue Mar 31 2020 01:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47201 * 109.46997 * 2 1 4 4 N 2.60801 * 109.46959 * 0.02562 * 2 1 3 5 5 C 1.52992 * 109.47471 * 239.99629 * 2 1 3 6 6 C 1.50700 * 109.47177 * 60.00070 * 5 2 1 7 7 O 1.20827 * 119.99925 * 0.02562 * 6 5 2 8 8 O 1.34231 * 120.00073 * 179.97438 * 6 5 2 9 9 C 1.50700 * 109.46863 * 119.99506 * 2 1 3 10 10 O 1.21280 * 119.99777 * 114.95272 * 9 2 1 11 11 N 1.34776 * 120.00092 * 294.96040 * 9 2 1 12 12 C 1.46507 * 120.00127 * 184.40672 * 11 9 2 13 13 C 1.52989 * 109.47374 * 175.21721 * 12 11 9 14 14 C 1.50709 * 115.55358 * 65.18975 * 13 12 11 15 15 H 1.07999 * 119.99489 * 270.53601 * 14 13 12 16 16 C 1.37878 * 119.99957 * 90.52315 * 14 13 12 17 17 N 1.31505 * 119.99960 * 181.47937 * 16 14 13 18 18 Si 1.86804 * 119.99882 * 1.48602 * 16 14 13 19 19 H 1.48506 * 109.47139 * 92.93683 * 18 16 14 20 20 H 1.48501 * 109.46961 * 212.93601 * 18 16 14 21 21 H 1.48498 * 109.47379 * 332.93900 * 18 16 14 22 22 C 1.53002 * 117.50292 * 279.52189 * 13 12 11 23 23 C 1.53004 * 117.49955 * 210.85966 * 13 12 11 24 24 H 1.08996 * 109.46672 * 183.82402 * 1 2 3 25 25 H 1.08993 * 109.47071 * 303.82725 * 1 2 3 26 26 H 1.09003 * 109.46459 * 63.82932 * 1 2 3 27 27 H 1.08998 * 109.47175 * 300.00274 * 5 2 1 28 28 H 1.09004 * 109.47344 * 180.02562 * 5 2 1 29 29 H 0.96697 * 116.99750 * 180.02562 * 8 6 5 30 30 H 0.96996 * 120.00186 * 4.40093 * 11 9 2 31 31 H 1.09007 * 109.46594 * 295.21685 * 12 11 9 32 32 H 1.08998 * 109.47047 * 55.21187 * 12 11 9 33 33 H 0.97001 * 120.00422 * 180.02562 * 17 16 14 34 34 H 1.09004 * 117.49456 * 359.97438 * 22 13 12 35 35 H 1.08998 * 117.50511 * 145.01915 * 22 13 12 36 36 H 1.08997 * 117.49782 * 214.97516 * 23 13 12 37 37 H 1.08992 * 117.49640 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3993 2.4589 0.0011 5 6 2.0401 -0.7213 -1.2491 6 6 1.5378 -0.0110 -2.4796 7 8 0.8435 0.9717 -2.3689 8 8 1.8626 -0.4693 -3.6988 9 6 2.0323 -0.7103 1.2305 10 8 2.6522 -1.7470 1.1217 11 7 1.7925 -0.1936 2.4520 12 6 2.3623 -0.8309 3.6418 13 6 2.0406 0.0136 4.8762 14 6 0.5799 0.1127 5.2334 15 1 -0.0261 0.9023 4.8142 16 6 0.0171 -0.8047 6.0951 17 7 -1.2640 -0.7357 6.3840 18 14 1.0744 -2.1457 6.8524 19 1 1.5862 -1.6881 8.1692 20 1 0.2595 -3.3733 7.0374 21 1 2.2181 -2.4417 5.9526 22 6 2.9175 1.2390 5.1421 23 6 3.0495 -0.0035 6.0264 24 1 -0.3632 -1.0254 0.0685 25 1 -0.3633 0.5721 0.8537 26 1 -0.3632 0.4533 -0.9224 27 1 1.6768 -1.7489 -1.2491 28 1 3.1301 -0.7217 -1.2488 29 1 1.5172 0.0198 -4.4580 30 1 1.2428 0.6003 2.5434 31 1 1.9343 -1.8263 3.7609 32 1 3.4434 -0.9115 3.5283 33 1 -1.6599 -1.3809 6.9906 34 1 3.7238 1.4432 4.4376 35 1 2.4379 2.1166 5.5756 36 1 2.6567 0.0573 7.0413 37 1 3.9421 -0.6168 5.9038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602780104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:07 Heat of formation + Delta-G solvation = -74.730105 kcal Electronic energy + Delta-G solvation = -22020.357381 eV Core-core repulsion = 18570.928015 eV Total energy + Delta-G solvation = -3449.429366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07680 -39.73593 -37.44798 -36.87915 -36.19682 -34.21654 -33.73104 -32.18721 -28.97323 -26.97338 -25.57683 -24.56026 -21.90829 -21.73859 -20.89059 -19.52913 -18.49664 -18.19075 -16.66100 -16.51487 -16.06439 -15.72602 -15.61739 -15.10317 -14.67425 -14.14752 -14.01174 -13.66467 -13.34117 -13.14322 -12.88501 -12.71891 -12.57246 -12.50705 -12.32901 -12.13918 -11.78725 -11.59466 -11.48891 -11.22500 -10.96663 -10.68921 -10.53980 -10.26142 -9.82878 -9.59051 -9.26107 -8.76771 -8.63486 -8.51672 -6.21520 -4.27300 1.89257 2.41327 2.53308 2.65719 2.84939 3.23459 3.34931 3.38288 3.49827 3.74907 4.17476 4.34121 4.59470 4.70207 4.95980 5.02531 5.08802 5.16638 5.33434 5.57067 5.59456 5.66187 5.94234 5.98259 6.02163 6.11808 6.29724 6.35709 6.37352 6.63540 6.80286 6.91318 7.01435 7.44212 7.57914 7.60473 7.82032 8.32980 8.36811 8.78128 9.40920 10.89513 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.004556 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.672581 B = 6144.472307 C = 6286.624293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.035 3.965 3 C 0.214 3.786 4 N -0.403 5.403 5 C -0.091 4.091 6 C 0.479 3.521 7 O -0.505 6.505 8 O -0.513 6.513 9 C 0.524 3.476 10 O -0.537 6.537 11 N -0.690 5.690 12 C 0.156 3.844 13 C -0.018 4.018 14 C -0.494 4.494 15 H 0.079 0.921 16 C 0.081 3.919 17 N -0.893 5.893 18 Si 0.881 3.119 19 H -0.280 1.280 20 H -0.294 1.294 21 H -0.256 1.256 22 C -0.180 4.180 23 C -0.190 4.190 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.122 0.878 29 H 0.412 0.588 30 H 0.408 0.592 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -1.673 -15.102 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 C -0.105 4.105 4 N -0.078 5.078 5 C -0.130 4.130 6 C 0.321 3.679 7 O -0.392 6.392 8 O -0.325 6.325 9 C 0.306 3.694 10 O -0.415 6.415 11 N -0.338 5.338 12 C 0.033 3.967 13 C -0.019 4.019 14 C -0.531 4.531 15 H 0.097 0.903 16 C -0.122 4.122 17 N -0.529 5.529 18 Si 0.709 3.291 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.180 1.180 22 C -0.217 4.217 23 C -0.228 4.228 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.156 0.844 28 H 0.140 0.860 29 H 0.271 0.729 30 H 0.243 0.757 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.011 -0.810 -14.655 15.860 hybrid contribution -0.222 -0.403 0.162 0.487 sum 5.789 -1.212 -14.493 15.653 Atomic orbital electron populations 1.22217 0.88353 1.04882 1.06115 1.18215 0.99561 0.84280 0.95112 1.28195 0.93954 0.94106 0.94232 1.81175 1.08223 1.11286 1.07129 1.21179 1.04694 1.01346 0.85805 1.23312 0.77139 0.82466 0.84962 1.90726 1.35631 1.25953 1.86937 1.84521 1.72248 1.58976 1.16721 1.19532 0.80612 0.85338 0.83937 1.90718 1.41398 1.22982 1.86403 1.45877 1.51254 1.31300 1.05334 1.21236 0.95671 0.96765 0.83055 1.19634 0.93826 0.96169 0.92263 1.20172 0.89931 1.14549 1.28449 0.90331 1.24981 0.94691 0.97005 0.95563 1.69879 1.11228 1.36576 1.35206 0.86835 0.80866 0.81268 0.80167 1.20570 1.22120 1.18032 1.22892 1.02560 0.93067 1.03168 1.22936 1.00977 1.01954 0.96934 0.89792 0.90153 0.88453 0.84419 0.85959 0.72903 0.75675 0.91255 0.93146 0.92402 0.90950 0.89325 0.89136 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 8.13 37.16 0.30 -1.47 16 2 C 0.04 0.44 0.58 -158.45 -0.09 0.35 16 3 C 0.21 3.12 11.68 -20.76 -0.24 2.88 16 4 N -0.40 -6.71 18.54 42.15 0.78 -5.93 16 5 C -0.09 -0.89 4.16 -27.89 -0.12 -1.00 16 6 C 0.48 4.62 7.73 36.01 0.28 4.90 16 7 O -0.50 -6.24 13.26 -18.75 -0.25 -6.49 16 8 O -0.51 -3.63 13.42 -39.26 -0.53 -4.16 16 9 C 0.52 8.06 6.45 -10.99 -0.07 7.99 16 10 O -0.54 -9.29 15.99 5.56 0.09 -9.20 16 11 N -0.69 -11.81 5.27 -60.29 -0.32 -12.13 16 12 C 0.16 3.03 5.23 -4.04 -0.02 3.01 16 13 C -0.02 -0.37 0.85 -155.66 -0.13 -0.51 16 14 C -0.49 -12.48 9.22 -34.44 -0.32 -12.79 16 15 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -25.55 13.96 55.43 0.77 -24.78 16 18 Si 0.88 20.53 24.74 -169.99 -4.20 16.33 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.26 -5.64 5.98 56.52 0.34 -5.30 16 22 C -0.18 -3.42 9.96 -26.69 -0.27 -3.68 16 23 C -0.19 -3.79 7.22 -26.69 -0.19 -3.98 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 26 H 0.10 1.09 5.44 -51.93 -0.28 0.80 16 27 H 0.14 1.10 8.04 -51.93 -0.42 0.68 16 28 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.41 1.24 9.10 45.56 0.41 1.66 16 30 H 0.41 6.88 7.85 -40.82 -0.32 6.56 16 31 H 0.07 1.45 7.51 -51.93 -0.39 1.06 16 32 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.09 1.90 6.71 -51.93 -0.35 1.55 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -31.87 319.75 -3.71 -35.59 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.91 Total: 8.20 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.97 Total: -2.26 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 1.24 Total: -42.83 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.69 Total: -19.85 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.20 Total: 16.33 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.87 -3.71 -35.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602780104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.143 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds