Wall clock time and date at job start Tue Mar 31 2020 01:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.47201 * 109.46997 * 2 1 4 4 N 2.60801 * 109.46959 * 0.02562 * 2 1 3 5 5 C 1.52992 * 109.47471 * 239.99629 * 2 1 3 6 6 C 1.50700 * 109.47177 * 60.00070 * 5 2 1 7 7 O 1.20827 * 119.99925 * 0.02562 * 6 5 2 8 8 O 1.34231 * 120.00073 * 179.97438 * 6 5 2 9 9 C 1.50700 * 109.46863 * 119.99506 * 2 1 3 10 10 O 1.21280 * 119.99777 * 114.95272 * 9 2 1 11 11 N 1.34776 * 120.00092 * 294.96040 * 9 2 1 12 12 C 1.46507 * 120.00127 * 184.40672 * 11 9 2 13 13 C 1.52989 * 109.47374 * 175.21721 * 12 11 9 14 14 C 1.50709 * 115.55358 * 65.18975 * 13 12 11 15 15 H 1.07999 * 119.99489 * 270.53601 * 14 13 12 16 16 C 1.37878 * 119.99957 * 90.52315 * 14 13 12 17 17 N 1.31505 * 119.99960 * 181.47937 * 16 14 13 18 18 Si 1.86804 * 119.99882 * 1.48602 * 16 14 13 19 19 H 1.48506 * 109.47139 * 92.93683 * 18 16 14 20 20 H 1.48501 * 109.46961 * 212.93601 * 18 16 14 21 21 H 1.48498 * 109.47379 * 332.93900 * 18 16 14 22 22 C 1.53002 * 117.50292 * 279.52189 * 13 12 11 23 23 C 1.53004 * 117.49955 * 210.85966 * 13 12 11 24 24 H 1.08996 * 109.46672 * 183.82402 * 1 2 3 25 25 H 1.08993 * 109.47071 * 303.82725 * 1 2 3 26 26 H 1.09003 * 109.46459 * 63.82932 * 1 2 3 27 27 H 1.08998 * 109.47175 * 300.00274 * 5 2 1 28 28 H 1.09004 * 109.47344 * 180.02562 * 5 2 1 29 29 H 0.96697 * 116.99750 * 180.02562 * 8 6 5 30 30 H 0.96996 * 120.00186 * 4.40093 * 11 9 2 31 31 H 1.09007 * 109.46594 * 295.21685 * 12 11 9 32 32 H 1.08998 * 109.47047 * 55.21187 * 12 11 9 33 33 H 0.97001 * 120.00422 * 180.02562 * 17 16 14 34 34 H 1.09004 * 117.49456 * 359.97438 * 22 13 12 35 35 H 1.08998 * 117.50511 * 145.01915 * 22 13 12 36 36 H 1.08997 * 117.49782 * 214.97516 * 23 13 12 37 37 H 1.08992 * 117.49640 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3993 2.4589 0.0011 5 6 2.0401 -0.7213 -1.2491 6 6 1.5378 -0.0110 -2.4796 7 8 0.8435 0.9717 -2.3689 8 8 1.8626 -0.4693 -3.6988 9 6 2.0323 -0.7103 1.2305 10 8 2.6522 -1.7470 1.1217 11 7 1.7925 -0.1936 2.4520 12 6 2.3623 -0.8309 3.6418 13 6 2.0406 0.0136 4.8762 14 6 0.5799 0.1127 5.2334 15 1 -0.0261 0.9023 4.8142 16 6 0.0171 -0.8047 6.0951 17 7 -1.2640 -0.7357 6.3840 18 14 1.0744 -2.1457 6.8524 19 1 1.5862 -1.6881 8.1692 20 1 0.2595 -3.3733 7.0374 21 1 2.2181 -2.4417 5.9526 22 6 2.9175 1.2390 5.1421 23 6 3.0495 -0.0035 6.0264 24 1 -0.3632 -1.0254 0.0685 25 1 -0.3633 0.5721 0.8537 26 1 -0.3632 0.4533 -0.9224 27 1 1.6768 -1.7489 -1.2491 28 1 3.1301 -0.7217 -1.2488 29 1 1.5172 0.0198 -4.4580 30 1 1.2428 0.6003 2.5434 31 1 1.9343 -1.8263 3.7609 32 1 3.4434 -0.9115 3.5283 33 1 -1.6599 -1.3809 6.9906 34 1 3.7238 1.4432 4.4376 35 1 2.4379 2.1166 5.5756 36 1 2.6567 0.0573 7.0413 37 1 3.9421 -0.6168 5.9038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602780104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:07 Heat of formation + Delta-G solvation = -98.384658 kcal Electronic energy + Delta-G solvation = -22021.383120 eV Core-core repulsion = 18570.928015 eV Total energy + Delta-G solvation = -3450.455105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.01329 -40.80619 -38.92730 -38.03470 -37.04187 -35.29953 -35.10627 -34.18818 -29.87790 -28.46212 -27.30427 -25.72567 -23.43133 -22.55091 -22.13508 -21.16969 -19.68726 -19.02900 -18.37342 -17.35339 -17.08702 -16.95829 -16.86563 -16.64530 -16.02212 -15.55837 -15.21256 -14.85539 -14.69751 -14.57026 -14.22424 -14.00457 -13.89410 -13.73265 -13.47519 -13.19512 -13.06253 -12.78872 -12.72796 -12.45416 -12.34850 -12.17248 -11.96697 -11.55295 -11.51080 -11.03445 -10.97462 -10.64351 -10.35135 -9.97536 -8.26586 -6.34638 1.16332 1.22934 1.38573 1.44907 1.48548 1.51793 1.55803 1.88156 2.35666 2.40217 2.65418 3.08372 3.20667 3.24937 3.65198 3.68927 4.00368 4.34600 4.36640 4.39456 4.40576 4.54653 4.57293 4.72427 4.76838 4.81772 4.84487 5.08095 5.17239 5.28551 5.40528 5.47254 5.66508 5.70783 6.29241 6.30131 6.48251 6.74071 6.98307 7.04623 7.36491 8.87834 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.004556 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.672581 B = 6144.472307 C = 6286.624293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.044 3.956 3 C 0.231 3.769 4 N -0.442 5.442 5 C -0.092 4.092 6 C 0.488 3.512 7 O -0.536 6.536 8 O -0.504 6.504 9 C 0.530 3.470 10 O -0.550 6.550 11 N -0.697 5.697 12 C 0.163 3.837 13 C -0.038 4.038 14 C -0.483 4.483 15 H 0.042 0.958 16 C 0.028 3.972 17 N -0.943 5.943 18 Si 0.933 3.067 19 H -0.275 1.275 20 H -0.303 1.303 21 H -0.231 1.231 22 C -0.163 4.163 23 C -0.187 4.187 24 H 0.100 0.900 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.160 0.840 28 H 0.132 0.868 29 H 0.431 0.569 30 H 0.407 0.593 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.265 0.735 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 -2.762 -16.360 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 C -0.088 4.088 4 N -0.117 5.117 5 C -0.131 4.131 6 C 0.332 3.668 7 O -0.427 6.427 8 O -0.318 6.318 9 C 0.313 3.687 10 O -0.429 6.429 11 N -0.346 5.346 12 C 0.040 3.960 13 C -0.040 4.040 14 C -0.520 4.520 15 H 0.060 0.940 16 C -0.171 4.171 17 N -0.583 5.583 18 Si 0.759 3.241 19 H -0.200 1.200 20 H -0.230 1.230 21 H -0.154 1.154 22 C -0.200 4.200 23 C -0.225 4.225 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.178 0.822 28 H 0.150 0.850 29 H 0.293 0.707 30 H 0.242 0.758 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.021 -1.891 -15.960 17.962 hybrid contribution -0.864 -0.004 0.462 0.980 sum 7.157 -1.895 -15.498 17.175 Atomic orbital electron populations 1.22243 0.87488 1.05824 1.05839 1.18253 1.00075 0.82968 0.94983 1.28549 0.92900 0.94321 0.93017 1.81182 1.09600 1.12488 1.08450 1.21252 1.05329 1.01967 0.84529 1.23166 0.76340 0.81705 0.85611 1.90730 1.37213 1.27329 1.87438 1.84471 1.71834 1.58906 1.16609 1.19839 0.79805 0.85030 0.84022 1.90712 1.41854 1.23656 1.86655 1.45898 1.51666 1.31414 1.05578 1.20992 0.96538 0.95516 0.82973 1.19519 0.91728 0.98715 0.93989 1.20311 0.92022 1.12676 1.27010 0.93979 1.25732 0.95524 0.99400 0.96421 1.70018 1.13229 1.38076 1.36931 0.85988 0.79982 0.78249 0.79918 1.20031 1.23047 1.15374 1.22880 1.02087 0.92117 1.02885 1.23013 1.01099 1.02606 0.95759 0.88131 0.91331 0.87988 0.82229 0.84973 0.70671 0.75765 0.92920 0.91486 0.92633 0.88454 0.90175 0.90379 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.13 71.98 0.59 -2.74 16 2 C 0.04 1.02 0.58 -54.73 -0.03 0.99 16 3 C 0.23 6.47 11.68 89.44 1.04 7.51 16 4 N -0.44 -14.43 18.54 20.01 0.37 -14.06 16 5 C -0.09 -1.55 4.16 29.85 0.12 -1.43 16 6 C 0.49 8.28 7.73 71.24 0.55 8.83 16 7 O -0.54 -12.44 13.26 21.96 0.29 -12.15 16 8 O -0.50 -5.69 13.42 -51.43 -0.69 -6.38 16 9 C 0.53 15.32 6.45 87.66 0.57 15.88 16 10 O -0.55 -17.66 15.99 -3.03 -0.05 -17.71 16 11 N -0.70 -23.02 5.27 -463.06 -2.44 -25.46 16 12 C 0.16 6.03 5.23 86.37 0.45 6.48 16 13 C -0.04 -1.57 0.85 -52.93 -0.05 -1.61 16 14 C -0.48 -24.69 9.22 25.60 0.24 -24.46 16 15 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 16 C 0.03 1.49 5.47 84.66 0.46 1.95 16 17 N -0.94 -55.65 13.96 21.45 0.30 -55.35 16 18 Si 0.93 41.87 24.74 68.60 1.70 43.56 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.23 -9.34 5.98 99.48 0.60 -8.74 16 22 C -0.16 -5.83 9.96 30.62 0.30 -5.52 16 23 C -0.19 -6.93 7.22 30.62 0.22 -6.70 16 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 1.62 7.88 -2.39 -0.02 1.60 16 26 H 0.10 2.15 5.44 -2.39 -0.01 2.14 16 27 H 0.16 2.01 8.04 -2.39 -0.02 1.99 16 28 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.43 1.40 9.10 -74.06 -0.67 0.73 16 30 H 0.41 13.61 7.85 -92.71 -0.73 12.89 16 31 H 0.05 2.11 7.51 -2.38 -0.02 2.09 16 32 H 0.07 2.26 8.09 -2.39 -0.02 2.24 16 33 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 35 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 3.10 6.71 -2.39 -0.02 3.09 16 37 H 0.10 3.29 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -68.96 319.75 3.56 -65.40 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.39 Total: 22.97 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 4.47 Total: -0.81 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -1.77 Total: -94.88 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.45 Total: -36.24 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.70 Total: 43.56 kcal Total: -68.96 3.56 -65.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602780104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.988 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds