Wall clock time and date at job start Tue Mar 31 2020 01:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47208 * 109.46756 * 2 1 4 4 N 2.60803 * 109.46815 * 359.97438 * 2 1 3 5 5 C 1.52998 * 109.47044 * 119.99582 * 2 1 3 6 6 C 1.50698 * 109.47345 * 300.00450 * 5 2 1 7 7 O 1.20825 * 119.99866 * 359.97438 * 6 5 2 8 8 O 1.34230 * 120.00134 * 180.02562 * 6 5 2 9 9 C 1.50698 * 109.47417 * 239.99988 * 2 1 3 10 10 O 1.21284 * 119.99792 * 244.36209 * 9 2 1 11 11 N 1.34778 * 119.99788 * 64.35790 * 9 2 1 12 12 C 1.46503 * 119.99393 * 185.22075 * 11 9 2 13 13 C 1.53004 * 109.46587 * 175.12453 * 12 11 9 14 14 C 1.50700 * 115.54821 * 306.87525 * 13 12 11 15 15 H 1.08001 * 119.99755 * 144.15308 * 14 13 12 16 16 C 1.37876 * 120.00013 * 324.15250 * 14 13 12 17 17 N 1.31511 * 120.00136 * 344.39969 * 16 14 13 18 18 Si 1.86803 * 119.99968 * 164.40240 * 16 14 13 19 19 H 1.48504 * 109.46907 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47399 * 119.99548 * 18 16 14 21 21 H 1.48497 * 109.47221 * 240.00344 * 18 16 14 22 22 C 1.53005 * 117.49457 * 161.21204 * 13 12 11 23 23 C 1.53003 * 117.50113 * 92.55046 * 13 12 11 24 24 H 1.09006 * 109.47090 * 65.91124 * 1 2 3 25 25 H 1.08996 * 109.47147 * 305.91069 * 1 2 3 26 26 H 1.09002 * 109.47034 * 185.90669 * 1 2 3 27 27 H 1.09000 * 109.47193 * 60.00208 * 5 2 1 28 28 H 1.09002 * 109.47369 * 180.02562 * 5 2 1 29 29 H 0.96709 * 116.99639 * 180.02562 * 8 6 5 30 30 H 0.96998 * 120.00273 * 5.22953 * 11 9 2 31 31 H 1.08998 * 109.47120 * 295.12208 * 12 11 9 32 32 H 1.08998 * 109.47588 * 55.12178 * 12 11 9 33 33 H 0.97000 * 119.99933 * 185.04570 * 17 16 14 34 34 H 1.08993 * 117.50397 * 359.97438 * 22 13 12 35 35 H 1.08996 * 117.49581 * 145.02159 * 22 13 12 36 36 H 1.08999 * 117.49850 * 214.97277 * 23 13 12 37 37 H 1.08999 * 117.49736 * 359.97149 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3992 2.4589 -0.0011 5 6 2.0400 -0.7212 1.2493 6 6 1.5376 -0.0108 2.4797 7 8 0.8433 0.9718 2.3688 8 8 1.8623 -0.4690 3.6989 9 6 2.0324 -0.7104 -1.2304 10 8 2.6631 -1.7406 -1.1208 11 7 1.7808 -0.2009 -2.4526 12 6 2.1686 -0.9482 -3.6516 13 6 1.6649 -0.2134 -4.8955 14 6 0.1952 0.1197 -4.9030 15 1 -0.1470 1.0429 -5.3469 16 6 -0.7126 -0.7542 -4.3433 17 7 -0.3578 -1.9935 -4.0830 18 14 -2.4465 -0.1778 -3.9548 19 1 -2.5920 1.2488 -4.3407 20 1 -3.4230 -0.9979 -4.7159 21 1 -2.7031 -0.3262 -2.4997 22 6 2.3170 -0.5627 -6.2348 23 6 2.6178 0.7798 -5.5636 24 1 -0.3633 0.4195 -0.9382 25 1 -0.3633 0.6027 0.8323 26 1 -0.3633 -1.0222 0.1058 27 1 1.6767 -1.7488 1.2493 28 1 3.1300 -0.7208 1.2496 29 1 1.5161 0.0198 4.4581 30 1 1.3432 0.6605 -2.5383 31 1 3.2546 -1.0305 -3.6930 32 1 1.7298 -1.9454 -3.6160 33 1 -1.0154 -2.6281 -3.7578 34 1 3.1051 -1.3157 -6.2297 35 1 1.6831 -0.5511 -7.1214 36 1 2.1817 1.6740 -6.0090 37 1 3.6034 0.9101 -5.1167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602780108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:10 Heat of formation + Delta-G solvation = -76.351253 kcal Electronic energy + Delta-G solvation = -22469.057658 eV Core-core repulsion = 19019.557994 eV Total energy + Delta-G solvation = -3449.499664 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89768 -39.46494 -37.14366 -36.60214 -36.06656 -34.02802 -33.33157 -32.25730 -28.76811 -26.45812 -25.54638 -24.38367 -21.65257 -21.30246 -20.62182 -19.41547 -18.40928 -18.07407 -16.58553 -16.35431 -15.89905 -15.43804 -15.30362 -14.87131 -14.44543 -13.98592 -13.80090 -13.54556 -13.17882 -12.98937 -12.85129 -12.51079 -12.34085 -12.17314 -11.79955 -11.74105 -11.59823 -11.49494 -11.33816 -11.04959 -10.84523 -10.56603 -10.54868 -10.33691 -9.76211 -9.32205 -9.22016 -8.86582 -8.37629 -8.04209 -6.18931 -4.22572 2.01389 2.62251 2.72345 2.81936 3.03259 3.14076 3.26144 3.30253 3.76637 3.99573 4.24193 4.35262 4.78386 4.83399 5.14481 5.21389 5.34111 5.43202 5.50167 5.76490 5.83992 5.93845 6.18039 6.22687 6.42861 6.44933 6.52794 6.62871 6.81660 6.97674 7.20102 7.31250 7.43391 7.57180 7.69337 7.80727 8.18707 8.25815 8.72366 8.75514 9.36862 10.81698 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018372 B = 0.006077 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.679914 B = 4606.485112 C = 5213.665195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.034 3.966 3 C 0.218 3.782 4 N -0.410 5.410 5 C -0.090 4.090 6 C 0.478 3.522 7 O -0.506 6.506 8 O -0.513 6.513 9 C 0.523 3.477 10 O -0.541 6.541 11 N -0.678 5.678 12 C 0.160 3.840 13 C 0.036 3.964 14 C -0.502 4.502 15 H 0.063 0.937 16 C 0.080 3.920 17 N -0.864 5.864 18 Si 0.879 3.121 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.277 1.277 22 C -0.191 4.191 23 C -0.213 4.213 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.411 0.589 30 H 0.401 0.599 31 H 0.031 0.969 32 H 0.112 0.888 33 H 0.264 0.736 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 0.168 11.146 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 C -0.101 4.101 4 N -0.085 5.085 5 C -0.129 4.129 6 C 0.321 3.679 7 O -0.394 6.394 8 O -0.325 6.325 9 C 0.304 3.696 10 O -0.420 6.420 11 N -0.324 5.324 12 C 0.038 3.962 13 C 0.035 3.965 14 C -0.539 4.539 15 H 0.081 0.919 16 C -0.125 4.125 17 N -0.499 5.499 18 Si 0.706 3.294 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.203 1.203 22 C -0.230 4.230 23 C -0.250 4.250 24 H 0.097 0.903 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.155 0.845 28 H 0.140 0.860 29 H 0.269 0.731 30 H 0.236 0.764 31 H 0.049 0.951 32 H 0.130 0.870 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.928 0.936 10.938 11.362 hybrid contribution -1.603 0.612 0.477 1.781 sum 1.325 1.548 11.415 11.596 Atomic orbital electron populations 1.22175 0.88634 1.04864 1.05590 1.18278 0.99346 0.84173 0.95528 1.28291 0.93717 0.94162 0.93964 1.81142 1.08536 1.11347 1.07470 1.21194 1.04611 1.01324 0.85762 1.23381 0.77116 0.82480 0.84933 1.90716 1.35668 1.26038 1.86946 1.84530 1.72241 1.59018 1.16717 1.19369 0.80911 0.85415 0.83863 1.90691 1.40702 1.24283 1.86315 1.45803 1.58367 1.23140 1.05079 1.21090 0.95279 0.98251 0.81621 1.19175 0.92948 0.95490 0.88882 1.20482 0.88818 1.05770 1.38839 0.91901 1.24919 0.98358 0.94562 0.94663 1.69887 1.34277 1.02478 1.43230 0.86735 0.84643 0.79390 0.78631 1.19561 1.20918 1.20281 1.22908 1.03360 0.96819 0.99924 1.22984 1.00177 0.93718 1.08111 0.90268 0.88769 0.90014 0.84495 0.86008 0.73070 0.76383 0.95068 0.86978 0.92555 0.91471 0.90112 0.90555 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.03 37.16 0.30 -1.91 16 2 C 0.03 0.50 0.59 -158.45 -0.09 0.41 16 3 C 0.22 3.56 11.58 -20.76 -0.24 3.32 16 4 N -0.41 -7.38 18.54 42.15 0.78 -6.60 16 5 C -0.09 -1.06 4.16 -27.88 -0.12 -1.18 16 6 C 0.48 5.42 7.77 36.00 0.28 5.70 16 7 O -0.51 -7.07 13.28 -18.75 -0.25 -7.32 16 8 O -0.51 -4.34 13.42 -39.26 -0.53 -4.87 16 9 C 0.52 9.45 6.45 -10.99 -0.07 9.38 16 10 O -0.54 -10.81 15.99 5.55 0.09 -10.72 16 11 N -0.68 -13.34 4.97 -60.29 -0.30 -13.64 16 12 C 0.16 3.50 4.83 -4.04 -0.02 3.48 16 13 C 0.04 0.81 1.93 -155.65 -0.30 0.51 16 14 C -0.50 -12.26 8.34 -34.44 -0.29 -12.55 16 15 H 0.06 1.57 7.86 -52.49 -0.41 1.16 16 16 C 0.08 1.95 5.06 -17.82 -0.09 1.86 16 17 N -0.86 -21.63 11.04 55.43 0.61 -21.02 16 18 Si 0.88 19.01 29.57 -169.99 -5.03 13.99 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.19 -4.07 9.96 -26.69 -0.27 -4.33 16 23 C -0.21 -4.32 9.92 -26.69 -0.26 -4.59 16 24 H 0.08 1.24 7.84 -51.93 -0.41 0.84 16 25 H 0.09 1.31 5.67 -51.93 -0.29 1.01 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.14 1.41 8.05 -51.93 -0.42 0.99 16 28 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.41 1.75 9.10 45.56 0.41 2.17 16 30 H 0.40 7.83 7.54 -40.82 -0.31 7.52 16 31 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 32 H 0.11 2.76 6.18 -51.93 -0.32 2.44 16 33 H 0.26 6.40 8.32 -40.82 -0.34 6.06 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 36 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -29.06 324.25 -4.74 -33.80 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -3.84 Total: 11.41 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.17 Total: 0.09 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 1.09 Total: -41.26 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.69 Total: -22.92 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.06 -4.74 -33.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602780108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.548 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds