Wall clock time and date at job start Tue Mar 31 2020 01:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47208 * 109.46756 * 2 1 4 4 N 2.60803 * 109.46815 * 359.97438 * 2 1 3 5 5 C 1.52998 * 109.47044 * 119.99582 * 2 1 3 6 6 C 1.50698 * 109.47345 * 300.00450 * 5 2 1 7 7 O 1.20825 * 119.99866 * 359.97438 * 6 5 2 8 8 O 1.34230 * 120.00134 * 180.02562 * 6 5 2 9 9 C 1.50698 * 109.47417 * 239.99988 * 2 1 3 10 10 O 1.21284 * 119.99792 * 244.36209 * 9 2 1 11 11 N 1.34778 * 119.99788 * 64.35790 * 9 2 1 12 12 C 1.46503 * 119.99393 * 185.22075 * 11 9 2 13 13 C 1.53004 * 109.46587 * 175.12453 * 12 11 9 14 14 C 1.50700 * 115.54821 * 306.87525 * 13 12 11 15 15 H 1.08001 * 119.99755 * 144.15308 * 14 13 12 16 16 C 1.37876 * 120.00013 * 324.15250 * 14 13 12 17 17 N 1.31511 * 120.00136 * 344.39969 * 16 14 13 18 18 Si 1.86803 * 119.99968 * 164.40240 * 16 14 13 19 19 H 1.48504 * 109.46907 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47399 * 119.99548 * 18 16 14 21 21 H 1.48497 * 109.47221 * 240.00344 * 18 16 14 22 22 C 1.53005 * 117.49457 * 161.21204 * 13 12 11 23 23 C 1.53003 * 117.50113 * 92.55046 * 13 12 11 24 24 H 1.09006 * 109.47090 * 65.91124 * 1 2 3 25 25 H 1.08996 * 109.47147 * 305.91069 * 1 2 3 26 26 H 1.09002 * 109.47034 * 185.90669 * 1 2 3 27 27 H 1.09000 * 109.47193 * 60.00208 * 5 2 1 28 28 H 1.09002 * 109.47369 * 180.02562 * 5 2 1 29 29 H 0.96709 * 116.99639 * 180.02562 * 8 6 5 30 30 H 0.96998 * 120.00273 * 5.22953 * 11 9 2 31 31 H 1.08998 * 109.47120 * 295.12208 * 12 11 9 32 32 H 1.08998 * 109.47588 * 55.12178 * 12 11 9 33 33 H 0.97000 * 119.99933 * 185.04570 * 17 16 14 34 34 H 1.08993 * 117.50397 * 359.97438 * 22 13 12 35 35 H 1.08996 * 117.49581 * 145.02159 * 22 13 12 36 36 H 1.08999 * 117.49850 * 214.97277 * 23 13 12 37 37 H 1.08999 * 117.49736 * 359.97149 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3992 2.4589 -0.0011 5 6 2.0400 -0.7212 1.2493 6 6 1.5376 -0.0108 2.4797 7 8 0.8433 0.9718 2.3688 8 8 1.8623 -0.4690 3.6989 9 6 2.0324 -0.7104 -1.2304 10 8 2.6631 -1.7406 -1.1208 11 7 1.7808 -0.2009 -2.4526 12 6 2.1686 -0.9482 -3.6516 13 6 1.6649 -0.2134 -4.8955 14 6 0.1952 0.1197 -4.9030 15 1 -0.1470 1.0429 -5.3469 16 6 -0.7126 -0.7542 -4.3433 17 7 -0.3578 -1.9935 -4.0830 18 14 -2.4465 -0.1778 -3.9548 19 1 -2.5920 1.2488 -4.3407 20 1 -3.4230 -0.9979 -4.7159 21 1 -2.7031 -0.3262 -2.4997 22 6 2.3170 -0.5627 -6.2348 23 6 2.6178 0.7798 -5.5636 24 1 -0.3633 0.4195 -0.9382 25 1 -0.3633 0.6027 0.8323 26 1 -0.3633 -1.0222 0.1058 27 1 1.6767 -1.7488 1.2493 28 1 3.1300 -0.7208 1.2496 29 1 1.5161 0.0198 4.4581 30 1 1.3432 0.6605 -2.5383 31 1 3.2546 -1.0305 -3.6930 32 1 1.7298 -1.9454 -3.6160 33 1 -1.0154 -2.6281 -3.7578 34 1 3.1051 -1.3157 -6.2297 35 1 1.6831 -0.5511 -7.1214 36 1 2.1817 1.6740 -6.0090 37 1 3.6034 0.9101 -5.1167 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602780108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:08 Heat of formation + Delta-G solvation = -95.363595 kcal Electronic energy + Delta-G solvation = -22469.882096 eV Core-core repulsion = 19019.557994 eV Total energy + Delta-G solvation = -3450.324101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96432 -40.71924 -38.65745 -37.97069 -37.04573 -35.27241 -34.88828 -34.11232 -29.82994 -28.05590 -27.31146 -25.68305 -22.98338 -22.54571 -22.05567 -21.14819 -19.71195 -19.04591 -18.22839 -17.33814 -16.88225 -16.81769 -16.77995 -16.59666 -15.93264 -15.53201 -15.13817 -14.89223 -14.55197 -14.42656 -14.01451 -13.82860 -13.65691 -13.50621 -13.37981 -13.19811 -12.86875 -12.81017 -12.65045 -12.43218 -12.38785 -12.26554 -12.04505 -11.54510 -11.41226 -11.10945 -10.80191 -10.59336 -10.10682 -9.72914 -8.04061 -6.12925 1.14991 1.33453 1.41549 1.46521 1.49892 1.54472 1.57097 1.91636 2.43382 2.45845 2.70584 3.04842 3.25007 3.63883 3.66237 3.80464 4.25239 4.34735 4.39549 4.53064 4.54268 4.69353 4.73527 4.74396 4.80962 4.97511 5.10666 5.12956 5.28749 5.53067 5.61584 5.64211 5.68191 5.93973 6.27150 6.41401 6.64369 6.87064 6.97487 7.22245 7.48387 8.95086 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018372 B = 0.006077 C = 0.005369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.679914 B = 4606.485112 C = 5213.665195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 C 0.231 3.769 4 N -0.439 5.439 5 C -0.092 4.092 6 C 0.489 3.511 7 O -0.536 6.536 8 O -0.503 6.503 9 C 0.525 3.475 10 O -0.559 6.559 11 N -0.682 5.682 12 C 0.172 3.828 13 C 0.012 3.988 14 C -0.515 4.515 15 H 0.051 0.949 16 C 0.053 3.947 17 N -0.882 5.882 18 Si 0.925 3.075 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.193 4.193 23 C -0.193 4.193 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.155 0.845 28 H 0.132 0.868 29 H 0.431 0.569 30 H 0.402 0.598 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.051 0.125 12.485 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.037 3.963 3 C -0.087 4.087 4 N -0.115 5.115 5 C -0.130 4.130 6 C 0.333 3.667 7 O -0.426 6.426 8 O -0.317 6.317 9 C 0.308 3.692 10 O -0.438 6.438 11 N -0.329 5.329 12 C 0.049 3.951 13 C 0.011 3.989 14 C -0.552 4.552 15 H 0.069 0.931 16 C -0.151 4.151 17 N -0.518 5.518 18 Si 0.751 3.249 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.231 4.231 23 C -0.230 4.230 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.173 0.827 28 H 0.150 0.850 29 H 0.293 0.707 30 H 0.236 0.764 31 H 0.052 0.948 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.973 0.896 12.312 12.698 hybrid contribution -1.582 0.597 0.063 1.692 sum 1.392 1.493 12.375 12.543 Atomic orbital electron populations 1.22183 0.88068 1.05755 1.04991 1.18249 0.99607 0.83181 0.95291 1.28523 0.92899 0.94269 0.93015 1.81148 1.09569 1.12270 1.08494 1.21241 1.05308 1.01788 0.84673 1.23113 0.76345 0.81694 0.85545 1.90717 1.37165 1.27310 1.87442 1.84475 1.71789 1.58912 1.16522 1.19788 0.80084 0.85168 0.84192 1.90679 1.41320 1.25145 1.86676 1.45771 1.58788 1.23077 1.05238 1.20763 0.95003 0.97018 0.82348 1.19252 0.92652 0.97283 0.89721 1.20586 0.90111 1.05331 1.39133 0.93104 1.25348 1.00766 0.94492 0.94484 1.69988 1.34990 1.03033 1.43803 0.86030 0.81420 0.78483 0.78950 1.19964 1.21482 1.18976 1.22910 1.03410 0.97874 0.98940 1.22965 1.00216 0.93184 1.06680 0.91910 0.87986 0.88690 0.82709 0.84969 0.70672 0.76363 0.94807 0.89763 0.92647 0.90313 0.90869 0.90378 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.03 71.98 0.58 -3.55 16 2 C 0.04 1.23 0.59 -54.73 -0.03 1.20 16 3 C 0.23 7.33 11.58 89.44 1.04 8.36 16 4 N -0.44 -15.48 18.54 20.01 0.37 -15.11 16 5 C -0.09 -1.94 4.16 29.85 0.12 -1.82 16 6 C 0.49 9.87 7.77 71.24 0.55 10.42 16 7 O -0.54 -13.94 13.28 21.97 0.29 -13.65 16 8 O -0.50 -6.97 13.42 -51.41 -0.69 -7.66 16 9 C 0.52 18.46 6.45 87.66 0.57 19.02 16 10 O -0.56 -21.73 15.99 -3.04 -0.05 -21.77 16 11 N -0.68 -26.58 4.97 -463.05 -2.30 -28.88 16 12 C 0.17 7.49 4.83 86.38 0.42 7.90 16 13 C 0.01 0.52 1.93 -52.92 -0.10 0.42 16 14 C -0.51 -25.12 8.34 25.60 0.21 -24.91 16 15 H 0.05 2.55 7.86 -2.91 -0.02 2.53 16 16 C 0.05 2.54 5.06 84.65 0.43 2.97 16 17 N -0.88 -44.19 11.04 21.45 0.24 -43.95 16 18 Si 0.93 38.67 29.57 68.60 2.03 40.70 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 C -0.19 -8.05 9.96 30.62 0.30 -7.75 16 23 C -0.19 -7.63 9.92 30.62 0.30 -7.32 16 24 H 0.06 1.91 7.84 -2.38 -0.02 1.89 16 25 H 0.10 2.66 5.67 -2.39 -0.01 2.65 16 26 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.16 2.76 8.05 -2.39 -0.02 2.74 16 28 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.43 2.32 9.10 -74.05 -0.67 1.65 16 30 H 0.40 15.57 7.54 -92.71 -0.70 14.87 16 31 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.08 4.18 6.18 -2.39 -0.01 4.16 16 33 H 0.26 12.74 8.32 -92.71 -0.77 11.97 16 34 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -60.70 324.25 4.03 -56.67 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.25 Total: 28.71 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 4.39 Total: 4.95 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -1.70 Total: -87.95 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.45 Total: -43.08 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -60.70 4.03 -56.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602780108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.694 kcal (2) G-P(sol) polarization free energy of solvation -60.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds