Wall clock time and date at job start Tue Mar 31 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47139 * 2 1 4 4 C 1.35682 * 117.00066 * 180.02562 * 3 2 1 5 5 C 1.38917 * 119.68416 * 179.72516 * 4 3 2 6 6 C 1.38386 * 119.11174 * 179.75013 * 5 4 3 7 7 C 1.38826 * 118.47933 * 0.50812 * 6 5 4 8 8 C 1.38040 * 119.29516 * 359.73150 * 7 6 5 9 9 C 1.50698 * 119.58410 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.46833 * 95.02540 * 9 8 7 11 11 C 1.36934 * 119.99736 * 269.99635 * 10 9 8 12 12 H 1.08008 * 120.00279 * 16.21070 * 11 10 9 13 13 C 1.38811 * 120.00166 * 196.20320 * 11 10 9 14 14 N 1.31612 * 120.00105 * 22.14322 * 13 11 10 15 15 Si 1.86805 * 120.00254 * 202.14469 * 13 11 10 16 16 H 1.48500 * 109.46982 * 59.99887 * 15 13 11 17 17 H 1.48491 * 109.47116 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46893 * 300.00092 * 15 13 11 19 19 C 1.46500 * 120.00285 * 89.99968 * 10 9 8 20 20 C 1.50699 * 109.46911 * 84.00577 * 19 10 9 21 21 O 1.20822 * 120.00452 * 0.02562 * 20 19 10 22 22 O 1.34233 * 119.99761 * 179.97438 * 20 19 10 23 23 N 1.31968 * 120.83230 * 0.02562 * 8 7 6 24 24 H 1.09001 * 109.46804 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46751 * 299.99993 * 1 2 3 26 26 H 1.08996 * 109.46888 * 60.00451 * 1 2 3 27 27 H 1.08997 * 109.47279 * 239.99274 * 2 1 3 28 28 H 1.09007 * 109.47294 * 119.99818 * 2 1 3 29 29 H 1.08004 * 120.44882 * 0.02562 * 5 4 3 30 30 H 1.07997 * 120.75955 * 180.24371 * 6 5 4 31 31 H 1.08005 * 120.34774 * 179.75074 * 7 6 5 32 32 H 1.09004 * 109.47210 * 215.01876 * 9 8 7 33 33 H 1.08990 * 109.47285 * 335.02603 * 9 8 7 34 34 H 0.96998 * 120.00872 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.47079 * 204.01254 * 19 10 9 36 36 H 1.09000 * 109.47040 * 324.00889 * 19 10 9 37 37 H 0.96694 * 116.99596 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3515 1.5250 -0.0005 5 6 3.8753 2.8116 -0.0064 6 6 5.2490 2.9792 -0.0016 7 6 6.0539 1.8482 -0.0019 8 6 5.4647 0.5998 -0.0013 9 6 6.3323 -0.6324 -0.0023 10 7 6.5159 -1.1013 1.3735 11 6 7.5678 -0.6404 2.1193 12 1 8.1031 0.2448 1.8088 13 6 7.9461 -1.3107 3.2745 14 7 7.6245 -2.5767 3.4360 15 14 8.9116 -0.4160 4.5999 16 1 8.1182 0.7366 5.0974 17 1 9.1907 -1.3469 5.7226 18 1 10.1938 0.0736 4.0330 19 6 5.5742 -2.0634 1.9514 20 6 5.9750 -3.4602 1.5524 21 8 6.9477 -3.6344 0.8572 22 8 5.2520 -4.5111 1.9703 23 7 4.1512 0.4718 -0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2194 3.6696 -0.0100 30 1 5.6848 3.9674 -0.0020 31 1 7.1297 1.9440 -0.0023 32 1 5.8527 -1.4140 -0.5915 33 1 7.3026 -0.3932 -0.4371 34 1 7.8884 -3.0451 4.2433 35 1 5.5881 -1.9776 3.0379 36 1 4.5697 -1.8545 1.5833 37 1 5.5483 -5.3875 1.6890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605704232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:44 Heat of formation + Delta-G solvation = -68.356685 kcal Electronic energy + Delta-G solvation = -22278.980144 eV Core-core repulsion = 18829.827150 eV Total energy + Delta-G solvation = -3449.152994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24807 -38.69907 -37.84580 -35.70585 -34.39683 -32.48083 -31.92713 -31.24175 -29.79829 -27.46396 -26.08589 -23.76158 -22.82841 -22.14779 -21.24582 -19.99391 -17.92834 -17.00038 -16.65484 -16.08408 -16.03183 -15.61111 -15.20965 -15.08037 -14.14028 -13.93883 -13.91036 -13.74532 -13.32152 -13.24021 -12.79081 -12.47737 -12.05173 -11.85208 -11.65378 -11.42261 -11.31744 -10.99876 -10.88961 -10.61727 -10.52798 -10.24045 -10.05531 -9.97926 -9.49733 -9.31364 -9.11481 -8.59291 -8.05012 -7.12892 -5.96243 -3.30003 1.56096 1.69947 3.27195 3.34197 3.40708 3.41747 3.89943 4.09325 4.41296 4.52463 4.68584 5.08343 5.10072 5.17842 5.27887 5.38662 5.41883 5.44867 5.53273 5.62222 5.83728 5.89243 6.03032 6.07289 6.17578 6.44194 6.45998 6.56580 6.63035 6.84888 6.95165 7.02145 7.58506 7.64769 7.85562 8.12437 8.37033 8.96786 9.42664 9.65870 10.08214 11.14818 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.006354 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.755337 B = 4405.420031 C = 5503.256556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 O -0.314 6.314 4 C 0.316 3.684 5 C -0.209 4.209 6 C -0.046 4.046 7 C -0.195 4.195 8 C 0.173 3.827 9 C 0.190 3.810 10 N -0.555 5.555 11 C -0.260 4.260 12 H 0.081 0.919 13 C 0.004 3.996 14 N -0.902 5.902 15 Si 0.910 3.090 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.282 1.282 19 C 0.191 3.809 20 C 0.479 3.521 21 O -0.517 6.517 22 O -0.543 6.543 23 N -0.532 5.532 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.258 0.742 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 6.039 -6.072 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.223 6.223 4 C 0.137 3.863 5 C -0.230 4.230 6 C -0.072 4.072 7 C -0.215 4.215 8 C 0.034 3.966 9 C 0.062 3.938 10 N -0.274 5.274 11 C -0.389 4.389 12 H 0.099 0.901 13 C -0.194 4.194 14 N -0.546 5.546 15 Si 0.739 3.261 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.208 1.208 19 C 0.062 3.938 20 C 0.319 3.681 21 O -0.403 6.403 22 O -0.354 6.354 23 N -0.256 5.256 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.075 0.925 37 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -10.386 5.624 -5.990 13.243 hybrid contribution 1.294 0.312 0.720 1.513 sum -9.092 5.936 -5.270 12.069 Atomic orbital electron populations 1.21806 0.93501 1.02667 1.02870 1.22537 0.94193 0.81425 1.02760 1.86169 1.17447 1.30395 1.88244 1.19801 0.83782 0.90162 0.92598 1.20867 0.95739 0.95381 1.10965 1.21320 0.92365 0.99169 0.94304 1.21832 1.01407 0.92661 1.05642 1.22404 0.88578 0.97007 0.88649 1.19774 0.95792 0.90440 0.87785 1.43757 1.28800 1.45688 1.09111 1.19226 1.09270 1.06809 1.03566 0.90138 1.24835 0.99531 0.94900 1.00158 1.69868 1.50221 1.07210 1.27316 0.86242 0.79552 0.78889 0.81390 1.20956 1.21624 1.20812 1.20207 0.90699 0.81772 1.01102 1.25238 0.80148 0.87707 0.74963 1.90500 1.26393 1.85869 1.37527 1.84631 1.58497 1.18154 1.74089 1.67223 1.06505 1.32716 1.19159 0.90473 0.91853 0.92017 0.91802 0.91431 0.85105 0.84852 0.84794 0.92364 0.90786 0.93124 0.87118 0.92478 0.76398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.07 0.89 6.03 37.16 0.22 1.11 16 3 O -0.31 -4.89 10.12 -18.75 -0.19 -5.07 16 4 C 0.32 5.33 7.49 -17.12 -0.13 5.20 16 5 C -0.21 -3.07 10.04 -39.28 -0.39 -3.47 16 6 C -0.05 -0.65 10.17 -39.31 -0.40 -1.05 16 7 C -0.19 -3.19 9.71 -39.44 -0.38 -3.57 16 8 C 0.17 3.24 6.36 -82.61 -0.53 2.71 16 9 C 0.19 3.93 5.94 -5.19 -0.03 3.90 16 10 N -0.55 -13.43 2.01 -175.98 -0.35 -13.78 16 11 C -0.26 -6.80 9.66 -15.06 -0.15 -6.95 16 12 H 0.08 2.02 7.92 -52.48 -0.42 1.60 16 13 C 0.00 0.11 4.86 -17.43 -0.08 0.03 16 14 N -0.90 -25.40 9.31 55.49 0.52 -24.88 16 15 Si 0.91 21.30 29.61 -169.99 -5.03 16.27 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.19 4.56 5.49 -5.19 -0.03 4.53 16 20 C 0.48 11.65 6.55 36.01 0.24 11.88 16 21 O -0.52 -14.14 16.89 -18.75 -0.32 -14.46 16 22 O -0.54 -11.19 13.42 -39.27 -0.53 -11.72 16 23 N -0.53 -9.84 9.13 -9.55 -0.09 -9.92 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 28 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 29 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 32 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 33 H 0.07 1.47 7.94 -51.93 -0.41 1.06 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.11 2.86 6.35 -51.93 -0.33 2.53 16 36 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 37 H 0.38 6.21 9.10 45.56 0.41 6.63 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -32.20 325.02 -6.47 -38.67 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.10 Total: 6.78 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -1.28 Total: 13.21 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.07 Total: -48.59 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.03 Total: -31.25 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.20 -6.47 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605704232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.684 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds