Wall clock time and date at job start Tue Mar 31 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47139 * 2 1 4 4 C 1.35682 * 117.00066 * 180.02562 * 3 2 1 5 5 C 1.38917 * 119.68416 * 179.72516 * 4 3 2 6 6 C 1.38386 * 119.11174 * 179.75013 * 5 4 3 7 7 C 1.38826 * 118.47933 * 0.50812 * 6 5 4 8 8 C 1.38040 * 119.29516 * 359.73150 * 7 6 5 9 9 C 1.50698 * 119.58410 * 179.97438 * 8 7 6 10 10 N 1.46507 * 109.46833 * 95.02540 * 9 8 7 11 11 C 1.36934 * 119.99736 * 269.99635 * 10 9 8 12 12 H 1.08008 * 120.00279 * 16.21070 * 11 10 9 13 13 C 1.38811 * 120.00166 * 196.20320 * 11 10 9 14 14 N 1.31612 * 120.00105 * 22.14322 * 13 11 10 15 15 Si 1.86805 * 120.00254 * 202.14469 * 13 11 10 16 16 H 1.48500 * 109.46982 * 59.99887 * 15 13 11 17 17 H 1.48491 * 109.47116 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46893 * 300.00092 * 15 13 11 19 19 C 1.46500 * 120.00285 * 89.99968 * 10 9 8 20 20 C 1.50699 * 109.46911 * 84.00577 * 19 10 9 21 21 O 1.20822 * 120.00452 * 0.02562 * 20 19 10 22 22 O 1.34233 * 119.99761 * 179.97438 * 20 19 10 23 23 N 1.31968 * 120.83230 * 0.02562 * 8 7 6 24 24 H 1.09001 * 109.46804 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46751 * 299.99993 * 1 2 3 26 26 H 1.08996 * 109.46888 * 60.00451 * 1 2 3 27 27 H 1.08997 * 109.47279 * 239.99274 * 2 1 3 28 28 H 1.09007 * 109.47294 * 119.99818 * 2 1 3 29 29 H 1.08004 * 120.44882 * 0.02562 * 5 4 3 30 30 H 1.07997 * 120.75955 * 180.24371 * 6 5 4 31 31 H 1.08005 * 120.34774 * 179.75074 * 7 6 5 32 32 H 1.09004 * 109.47210 * 215.01876 * 9 8 7 33 33 H 1.08990 * 109.47285 * 335.02603 * 9 8 7 34 34 H 0.96998 * 120.00872 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.47079 * 204.01254 * 19 10 9 36 36 H 1.09000 * 109.47040 * 324.00889 * 19 10 9 37 37 H 0.96694 * 116.99596 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3515 1.5250 -0.0005 5 6 3.8753 2.8116 -0.0064 6 6 5.2490 2.9792 -0.0016 7 6 6.0539 1.8482 -0.0019 8 6 5.4647 0.5998 -0.0013 9 6 6.3323 -0.6324 -0.0023 10 7 6.5159 -1.1013 1.3735 11 6 7.5678 -0.6404 2.1193 12 1 8.1031 0.2448 1.8088 13 6 7.9461 -1.3107 3.2745 14 7 7.6245 -2.5767 3.4360 15 14 8.9116 -0.4160 4.5999 16 1 8.1182 0.7366 5.0974 17 1 9.1907 -1.3469 5.7226 18 1 10.1938 0.0736 4.0330 19 6 5.5742 -2.0634 1.9514 20 6 5.9750 -3.4602 1.5524 21 8 6.9477 -3.6344 0.8572 22 8 5.2520 -4.5111 1.9703 23 7 4.1512 0.4718 -0.0010 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2194 3.6696 -0.0100 30 1 5.6848 3.9674 -0.0020 31 1 7.1297 1.9440 -0.0023 32 1 5.8527 -1.4140 -0.5915 33 1 7.3026 -0.3932 -0.4371 34 1 7.8884 -3.0451 4.2433 35 1 5.5881 -1.9776 3.0379 36 1 4.5697 -1.8545 1.5833 37 1 5.5483 -5.3875 1.6890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605704232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:43 Heat of formation + Delta-G solvation = -90.414232 kcal Electronic energy + Delta-G solvation = -22279.936631 eV Core-core repulsion = 18829.827150 eV Total energy + Delta-G solvation = -3450.109481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50423 -40.57896 -39.08879 -37.46153 -36.28613 -34.01077 -33.10537 -32.71650 -31.20729 -29.22374 -27.77970 -25.04564 -24.36469 -23.41350 -22.64646 -21.80250 -19.15262 -18.86589 -18.52434 -17.48238 -17.28338 -17.03443 -16.86210 -16.76987 -16.02369 -15.47870 -15.37128 -15.14263 -14.84533 -14.57499 -14.05782 -13.57433 -13.36163 -13.32786 -13.19048 -12.91069 -12.73544 -12.64337 -12.45385 -12.34288 -12.10485 -12.01809 -11.90385 -11.61257 -11.22130 -10.71486 -10.64921 -10.43058 -9.32975 -9.02648 -7.97035 -5.31596 0.28903 0.48880 1.48952 1.51789 1.58114 1.96880 2.15557 2.44797 2.71672 2.92107 3.21944 3.41023 3.65796 3.99818 4.11934 4.16628 4.25350 4.32218 4.46285 4.49934 4.60144 4.65886 4.82344 4.92744 4.93043 4.98713 5.06835 5.15671 5.19077 5.26386 5.39413 5.61963 5.65883 6.09577 6.17511 6.37202 6.97561 7.07578 7.55859 7.74841 8.13695 9.12596 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014829 B = 0.006354 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.755337 B = 4405.420031 C = 5503.256556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 O -0.317 6.317 4 C 0.295 3.705 5 C -0.201 4.201 6 C -0.035 4.035 7 C -0.200 4.200 8 C 0.149 3.851 9 C 0.195 3.805 10 N -0.568 5.568 11 C -0.261 4.261 12 H 0.088 0.912 13 C -0.049 4.049 14 N -0.931 5.931 15 Si 0.972 3.028 16 H -0.278 1.278 17 H -0.299 1.299 18 H -0.276 1.276 19 C 0.197 3.803 20 C 0.484 3.516 21 O -0.553 6.553 22 O -0.534 6.534 23 N -0.553 5.553 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.161 0.839 30 H 0.176 0.824 31 H 0.143 0.857 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.250 0.750 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 8.107 -6.253 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.013 4.013 3 O -0.226 6.226 4 C 0.116 3.884 5 C -0.221 4.221 6 C -0.060 4.060 7 C -0.221 4.221 8 C 0.011 3.989 9 C 0.068 3.932 10 N -0.287 5.287 11 C -0.390 4.390 12 H 0.106 0.894 13 C -0.244 4.244 14 N -0.577 5.577 15 Si 0.801 3.199 16 H -0.204 1.204 17 H -0.226 1.226 18 H -0.202 1.202 19 C 0.067 3.933 20 C 0.325 3.675 21 O -0.442 6.442 22 O -0.345 6.345 23 N -0.278 5.278 24 H 0.114 0.886 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.178 0.822 30 H 0.194 0.806 31 H 0.161 0.839 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -11.172 7.698 -6.195 14.915 hybrid contribution 1.434 -0.332 0.695 1.627 sum -9.739 7.366 -5.500 13.392 Atomic orbital electron populations 1.21800 0.90598 1.04100 1.03463 1.22681 0.96436 0.80572 1.01571 1.86181 1.16846 1.31342 1.88201 1.20191 0.84148 0.90788 0.93249 1.21308 0.96581 0.95361 1.08887 1.21763 0.91848 1.00206 0.92172 1.22005 1.02264 0.92555 1.05290 1.21952 0.88654 0.96862 0.91423 1.19739 0.96312 0.91177 0.85962 1.43907 1.28440 1.46057 1.10343 1.19575 1.09136 1.06627 1.03668 0.89414 1.25566 1.01268 0.95489 1.02069 1.70012 1.52055 1.08420 1.27255 0.85256 0.78495 0.77554 0.78628 1.20368 1.22565 1.20213 1.20088 0.91472 0.81912 0.99805 1.25274 0.79546 0.88554 0.74087 1.90476 1.27946 1.86545 1.39235 1.84551 1.57613 1.18949 1.73404 1.67061 1.06650 1.34150 1.19903 0.88639 0.91502 0.91098 0.92507 0.93157 0.82163 0.80635 0.83876 0.93404 0.90645 0.94044 0.89260 0.91023 0.73954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.06 1.65 6.03 71.98 0.43 2.09 16 3 O -0.32 -9.50 10.12 -90.00 -0.91 -10.41 16 4 C 0.30 9.60 7.49 84.79 0.63 10.24 16 5 C -0.20 -5.30 10.04 22.47 0.23 -5.08 16 6 C -0.03 -0.86 10.17 22.45 0.23 -0.63 16 7 C -0.20 -6.20 9.71 22.36 0.22 -5.98 16 8 C 0.15 5.53 6.36 42.49 0.27 5.80 16 9 C 0.19 8.18 5.94 85.63 0.51 8.69 16 10 N -0.57 -27.84 2.01 -710.68 -1.43 -29.27 16 11 C -0.26 -13.67 9.66 84.03 0.81 -12.86 16 12 H 0.09 4.35 7.92 -2.91 -0.02 4.33 16 13 C -0.05 -2.65 4.86 84.86 0.41 -2.23 16 14 N -0.93 -53.34 9.31 21.65 0.20 -53.14 16 15 Si 0.97 43.98 29.61 68.60 2.03 46.01 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 C 0.20 9.55 5.49 85.63 0.47 10.02 16 20 C 0.48 23.84 6.55 71.24 0.47 24.31 16 21 O -0.55 -30.79 16.89 21.98 0.37 -30.42 16 22 O -0.53 -21.85 13.42 -51.45 -0.69 -22.54 16 23 N -0.55 -20.34 9.13 -297.00 -2.71 -23.05 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 28 H 0.05 1.48 8.11 -2.38 -0.02 1.46 16 29 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 30 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 32 H 0.05 2.05 8.07 -2.38 -0.02 2.03 16 33 H 0.08 3.05 7.94 -2.39 -0.02 3.03 16 34 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.09 4.73 6.35 -2.39 -0.02 4.72 16 36 H 0.07 3.19 8.12 -2.39 -0.02 3.18 16 37 H 0.40 12.82 9.10 -74.06 -0.67 12.15 16 Total: -1.00 -69.47 325.02 2.69 -66.78 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.41 Total: 23.55 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 5.42 Total: 32.51 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.94 Total: -105.46 kcal Atomic # 8 Polarization: -62.15 SS G_CDS: -1.23 Total: -63.38 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.47 2.69 -66.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605704232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.637 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds