Wall clock time and date at job start Tue Mar 31 2020 01:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46926 * 240.00286 * 2 1 3 5 5 H 1.07995 * 119.99846 * 239.99678 * 4 2 1 6 6 C 1.37881 * 119.99851 * 59.99587 * 4 2 1 7 7 N 1.31506 * 120.00087 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99580 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47237 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46917 * 119.99984 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00176 * 8 6 4 12 12 C 1.52995 * 109.47165 * 119.99971 * 2 1 3 13 13 N 1.46497 * 109.47514 * 300.00045 * 12 2 1 14 14 C 1.34770 * 120.00223 * 179.97438 * 13 12 2 15 15 O 1.21607 * 120.00149 * 0.02562 * 14 13 12 16 16 C 1.47331 * 119.99999 * 180.02562 * 14 13 12 17 17 C 1.37948 * 125.88983 * 180.02562 * 16 14 13 18 18 C 1.39424 * 107.47430 * 179.74088 * 17 16 14 19 19 C 1.38001 * 107.44572 * 0.41330 * 18 17 16 20 20 C 1.47143 * 125.90869 * 179.84000 * 19 18 17 21 21 O 1.21535 * 120.00002 * 359.69713 * 20 19 18 22 22 O 1.34814 * 120.00450 * 179.69577 * 20 19 18 23 23 N 1.36705 * 125.89164 * 359.97438 * 16 14 13 24 24 H 0.97010 * 125.66162 * 359.97076 * 23 16 14 25 25 H 1.09003 * 109.47345 * 299.99422 * 1 2 3 26 26 H 1.08999 * 109.47465 * 60.00024 * 1 2 3 27 27 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46677 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47180 * 300.00150 * 3 2 1 30 30 H 1.09003 * 109.47244 * 60.00513 * 3 2 1 31 31 H 0.97005 * 120.00106 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47062 * 180.02562 * 12 2 1 33 33 H 1.09003 * 109.47367 * 60.00650 * 12 2 1 34 34 H 0.97009 * 119.99599 * 0.02562 * 13 12 2 35 35 H 1.08003 * 126.26048 * 359.96414 * 17 16 14 36 36 H 1.07998 * 126.27566 * 180.26211 * 18 17 16 37 37 H 0.96700 * 117.00422 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8296 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1483 -2.2855 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1856 -4.8162 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6694 15 8 2.5761 -1.4802 3.7810 16 6 1.3854 0.2027 4.8724 17 6 1.6426 -0.1612 6.1779 18 6 0.9985 0.7591 7.0038 19 6 0.3507 1.6644 6.1881 20 6 -0.4585 2.8075 6.6394 21 8 -0.6063 3.0160 7.8276 22 8 -1.0358 3.6237 5.7349 23 7 0.5965 1.3191 4.8874 24 1 0.2659 1.7885 4.1055 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.7085 1.1613 -3.4844 32 1 3.1300 -0.7208 1.2494 33 1 1.6768 -1.7489 1.2492 34 1 0.9937 0.7578 2.3564 35 1 2.2375 -1.0027 6.5011 36 1 1.0034 0.7615 8.0837 37 1 -1.5576 4.3614 6.0793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609672783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:14 Heat of formation + Delta-G solvation = -92.902394 kcal Electronic energy + Delta-G solvation = -21516.112542 eV Core-core repulsion = 18065.895167 eV Total energy + Delta-G solvation = -3450.217376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72382 -40.02606 -38.90214 -36.48683 -36.43244 -33.55401 -31.53169 -30.99580 -29.96325 -26.09296 -25.85149 -25.33267 -24.24292 -22.03292 -20.70468 -20.07103 -19.33936 -18.82395 -18.12612 -17.01240 -16.13934 -15.92189 -15.23303 -15.16642 -14.83461 -14.31759 -14.06452 -13.96918 -13.59259 -13.02335 -12.95714 -12.85705 -12.82343 -12.31725 -11.93789 -11.51482 -11.31377 -11.17750 -10.96409 -10.73595 -10.51074 -10.29991 -9.97455 -9.76269 -9.43255 -9.36752 -8.89364 -8.80111 -8.52561 -8.42018 -6.10484 -4.20738 0.68684 1.91841 2.44354 2.82097 2.84190 3.22503 3.31340 3.34349 3.42061 3.42949 4.33730 4.73286 4.86203 4.98746 5.15896 5.16878 5.61831 5.87844 6.04009 6.07899 6.18951 6.27657 6.36854 6.52408 6.59586 6.67255 6.77237 6.80807 6.89381 6.92991 7.22875 7.43733 7.51891 7.60398 7.78007 7.89691 8.02989 8.26510 8.38308 8.79998 9.45801 10.91098 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.003706 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.853818 B = 7554.003676 C = 8344.797012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.712 5.712 14 C 0.572 3.428 15 O -0.527 6.527 16 C 0.016 3.984 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.020 4.020 20 C 0.555 3.445 21 O -0.504 6.504 22 O -0.517 6.517 23 N -0.509 5.509 24 H 0.426 0.574 25 H 0.003 0.997 26 H 0.087 0.913 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.003 0.997 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.393 0.607 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 4.893 14.040 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.362 5.362 14 C 0.357 3.643 15 O -0.404 6.404 16 C -0.104 4.104 17 C -0.159 4.159 18 C -0.133 4.133 19 C -0.134 4.134 20 C 0.399 3.601 21 O -0.392 6.392 22 O -0.330 6.330 23 N -0.106 5.106 24 H 0.266 0.734 25 H 0.022 0.978 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.106 0.894 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -2.898 4.111 13.957 14.836 hybrid contribution -0.543 0.768 -1.081 1.433 sum -3.441 4.879 12.876 14.193 Atomic orbital electron populations 1.21847 0.97715 0.99328 0.99997 1.18388 0.92825 0.92795 0.90581 1.21845 0.98770 0.98279 0.99996 1.20998 1.31593 1.12201 0.89736 0.92231 1.24880 0.94772 0.94899 0.98930 1.69799 1.36603 1.22763 1.23250 0.86496 0.78669 0.79763 0.82862 1.19694 1.21024 1.21030 1.21846 0.98518 0.95964 0.82791 1.46290 1.52226 1.31531 1.06127 1.17214 0.81063 0.84126 0.81909 1.90821 1.38016 1.25468 1.86053 1.21117 1.01164 0.91377 0.96749 1.21296 1.03514 1.01588 0.89550 1.21304 0.98326 0.93869 0.99760 1.19328 1.09539 1.00177 0.84375 1.19618 0.76474 0.80418 0.83564 1.90944 1.59207 1.71642 1.17401 1.84574 1.63973 1.41956 1.42528 1.42045 1.38317 1.22514 1.07741 0.73431 0.97833 0.89426 0.95241 0.95236 0.89437 0.97823 0.92986 0.92121 0.92118 0.77231 0.82169 0.82378 0.72096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 2 C 0.05 1.20 0.50 -155.66 -0.08 1.13 16 3 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 4 C -0.51 -12.76 8.01 -34.44 -0.28 -13.04 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.81 9.35 55.43 0.52 -22.29 16 8 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.13 2.60 4.50 -4.05 -0.02 2.59 16 13 N -0.71 -11.74 4.95 -61.42 -0.30 -12.04 16 14 C 0.57 9.46 7.81 -12.56 -0.10 9.36 16 15 O -0.53 -10.43 16.87 5.27 0.09 -10.34 16 16 C 0.02 0.21 7.04 -82.10 -0.58 -0.37 16 17 C -0.13 -1.63 10.60 -39.25 -0.42 -2.05 16 18 C -0.11 -1.17 10.61 -39.23 -0.42 -1.59 16 19 C -0.02 -0.22 7.07 -82.12 -0.58 -0.80 16 20 C 0.56 5.87 8.33 34.34 0.29 6.16 16 21 O -0.50 -6.47 17.66 -19.29 -0.34 -6.81 16 22 O -0.52 -3.97 13.44 -40.80 -0.55 -4.52 16 23 N -0.51 -5.67 6.01 -5.90 -0.04 -5.70 16 24 H 0.43 4.02 8.15 -40.82 -0.33 3.69 16 25 H 0.00 0.05 6.86 -51.93 -0.36 -0.31 16 26 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 30 H 0.00 0.05 6.86 -51.93 -0.36 -0.30 16 31 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.39 5.71 5.26 -40.82 -0.21 5.49 16 35 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.42 1.29 9.11 45.56 0.42 1.71 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -29.94 318.04 -6.07 -36.01 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -3.55 Total: 7.78 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.67 Total: -2.01 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.18 Total: -40.04 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.80 Total: -21.67 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.94 -6.07 -36.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.889 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds