Wall clock time and date at job start Tue Mar 31 2020 01:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46926 * 240.00286 * 2 1 3 5 5 H 1.07995 * 119.99846 * 239.99678 * 4 2 1 6 6 C 1.37881 * 119.99851 * 59.99587 * 4 2 1 7 7 N 1.31506 * 120.00087 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99580 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47237 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46917 * 119.99984 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00176 * 8 6 4 12 12 C 1.52995 * 109.47165 * 119.99971 * 2 1 3 13 13 N 1.46497 * 109.47514 * 300.00045 * 12 2 1 14 14 C 1.34770 * 120.00223 * 179.97438 * 13 12 2 15 15 O 1.21607 * 120.00149 * 0.02562 * 14 13 12 16 16 C 1.47331 * 119.99999 * 180.02562 * 14 13 12 17 17 C 1.37948 * 125.88983 * 180.02562 * 16 14 13 18 18 C 1.39424 * 107.47430 * 179.74088 * 17 16 14 19 19 C 1.38001 * 107.44572 * 0.41330 * 18 17 16 20 20 C 1.47143 * 125.90869 * 179.84000 * 19 18 17 21 21 O 1.21535 * 120.00002 * 359.69713 * 20 19 18 22 22 O 1.34814 * 120.00450 * 179.69577 * 20 19 18 23 23 N 1.36705 * 125.89164 * 359.97438 * 16 14 13 24 24 H 0.97010 * 125.66162 * 359.97076 * 23 16 14 25 25 H 1.09003 * 109.47345 * 299.99422 * 1 2 3 26 26 H 1.08999 * 109.47465 * 60.00024 * 1 2 3 27 27 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46677 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47180 * 300.00150 * 3 2 1 30 30 H 1.09003 * 109.47244 * 60.00513 * 3 2 1 31 31 H 0.97005 * 120.00106 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47062 * 180.02562 * 12 2 1 33 33 H 1.09003 * 109.47367 * 60.00650 * 12 2 1 34 34 H 0.97009 * 119.99599 * 0.02562 * 13 12 2 35 35 H 1.08003 * 126.26048 * 359.96414 * 17 16 14 36 36 H 1.07998 * 126.27566 * 180.26211 * 18 17 16 37 37 H 0.96700 * 117.00422 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8296 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1483 -2.2855 -3.6039 10 1 1.1676 -1.5865 -4.8165 11 1 3.1471 -0.1856 -4.8162 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4915 3.6694 15 8 2.5761 -1.4802 3.7810 16 6 1.3854 0.2027 4.8724 17 6 1.6426 -0.1612 6.1779 18 6 0.9985 0.7591 7.0038 19 6 0.3507 1.6644 6.1881 20 6 -0.4585 2.8075 6.6394 21 8 -0.6063 3.0160 7.8276 22 8 -1.0358 3.6237 5.7349 23 7 0.5965 1.3191 4.8874 24 1 0.2659 1.7885 4.1055 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.7085 1.1613 -3.4844 32 1 3.1300 -0.7208 1.2494 33 1 1.6768 -1.7489 1.2492 34 1 0.9937 0.7578 2.3564 35 1 2.2375 -1.0027 6.5011 36 1 1.0034 0.7615 8.0837 37 1 -1.5576 4.3614 6.0793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609672783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:14 Heat of formation + Delta-G solvation = -113.633857 kcal Electronic energy + Delta-G solvation = -21517.011526 eV Core-core repulsion = 18065.895167 eV Total energy + Delta-G solvation = -3451.116359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.66776 -40.95156 -40.16302 -38.13972 -37.18219 -35.15511 -32.97618 -32.20975 -31.02863 -27.62136 -27.58760 -27.07525 -25.37955 -23.11306 -21.68225 -21.14867 -20.63013 -20.20196 -19.03107 -18.12312 -17.67444 -16.99239 -16.74379 -16.53551 -16.42415 -15.45208 -15.12740 -15.11699 -14.81077 -14.53359 -14.33181 -14.08400 -13.84540 -13.79508 -13.22614 -13.12857 -12.71858 -12.67758 -12.58213 -12.28013 -12.15200 -12.04624 -11.51319 -11.44569 -11.13170 -10.71629 -10.41832 -10.25033 -10.15260 -9.55037 -8.03431 -6.18640 -0.25773 0.93360 1.41632 1.46671 1.55151 1.58228 1.96902 2.03094 2.13952 2.21899 2.47373 3.21029 3.69325 3.93914 4.10630 4.31543 4.40626 4.49162 4.68049 4.71222 4.96136 5.01484 5.01584 5.07357 5.17081 5.24630 5.32848 5.48398 5.50674 5.62725 5.65115 5.67544 6.05132 6.13632 6.19040 6.41791 6.48902 6.85301 6.86536 7.06005 7.49460 8.95605 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.003706 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.853818 B = 7554.003676 C = 8344.797012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.146 3.854 13 N -0.705 5.705 14 C 0.577 3.423 15 O -0.565 6.565 16 C -0.005 4.005 17 C -0.129 4.129 18 C -0.108 4.108 19 C -0.014 4.014 20 C 0.564 3.436 21 O -0.528 6.528 22 O -0.509 6.509 23 N -0.498 5.498 24 H 0.434 0.566 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.404 0.596 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 5.928 15.213 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.023 3.977 13 N -0.356 5.356 14 C 0.364 3.636 15 O -0.444 6.444 16 C -0.124 4.124 17 C -0.155 4.155 18 C -0.134 4.134 19 C -0.130 4.130 20 C 0.409 3.591 21 O -0.417 6.417 22 O -0.324 6.324 23 N -0.096 5.096 24 H 0.275 0.725 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.241 0.759 35 H 0.184 0.816 36 H 0.194 0.806 37 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -3.662 5.193 15.114 16.396 hybrid contribution -0.360 0.509 -1.393 1.526 sum -4.022 5.702 13.722 15.394 Atomic orbital electron populations 1.21690 0.97055 0.98840 1.00392 1.18383 0.93299 0.93078 0.90310 1.21688 0.98113 0.97785 1.00391 1.21294 1.31664 1.12204 0.91435 0.93520 1.25422 0.95131 0.95569 1.00919 1.69899 1.36985 1.23290 1.23538 0.85728 0.78100 0.78766 0.80330 1.19945 1.20855 1.20864 1.21400 0.97559 0.95330 0.83417 1.46039 1.52449 1.31733 1.05343 1.17497 0.80113 0.83563 0.82388 1.90800 1.39730 1.27232 1.86636 1.20589 1.03389 0.92831 0.95615 1.21491 1.02993 1.01734 0.89264 1.21538 0.97871 0.93333 1.00661 1.19577 1.08897 1.00226 0.84268 1.19421 0.76093 0.80302 0.83291 1.90947 1.60101 1.72260 1.18435 1.84532 1.63757 1.42374 1.41736 1.41935 1.37687 1.21790 1.08190 0.72469 0.94521 0.91832 0.96127 0.96122 0.91844 0.94509 0.93060 0.93503 0.93502 0.75889 0.81622 0.80575 0.69588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 2 C 0.05 2.18 0.50 -52.93 -0.03 2.15 16 3 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 4 C -0.53 -26.83 8.01 25.60 0.21 -26.63 16 5 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 6 C 0.03 1.50 5.15 84.66 0.44 1.94 16 7 N -0.90 -46.33 9.35 21.45 0.20 -46.13 16 8 Si 0.94 41.52 29.54 68.60 2.03 43.54 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 12 C 0.15 5.82 4.50 86.38 0.39 6.20 16 13 N -0.70 -22.41 4.95 -466.49 -2.31 -24.72 16 14 C 0.58 18.58 7.81 86.64 0.68 19.25 16 15 O -0.56 -22.35 16.87 -4.05 -0.07 -22.42 16 16 C 0.00 -0.12 7.04 40.71 0.29 0.16 16 17 C -0.13 -2.91 10.60 22.49 0.24 -2.67 16 18 C -0.11 -2.12 10.61 22.50 0.24 -1.88 16 19 C -0.01 -0.28 7.07 40.65 0.29 0.01 16 20 C 0.56 10.31 8.33 70.16 0.58 10.89 16 21 O -0.53 -12.24 17.66 19.72 0.35 -11.89 16 22 O -0.51 -6.09 13.44 -57.26 -0.77 -6.86 16 23 N -0.50 -9.84 6.01 -172.60 -1.04 -10.88 16 24 H 0.43 6.91 8.15 -92.70 -0.76 6.16 16 25 H 0.04 1.24 6.86 -2.39 -0.02 1.23 16 26 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 27 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 2.99 6.07 -2.39 -0.01 2.97 16 30 H 0.04 1.25 6.86 -2.39 -0.02 1.23 16 31 H 0.26 12.93 8.31 -92.70 -0.77 12.16 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.40 10.82 5.26 -92.70 -0.49 10.33 16 35 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 37 H 0.44 1.19 9.11 -74.06 -0.67 0.51 16 Total: -1.00 -63.82 318.04 2.09 -61.73 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.78 Total: 17.23 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 4.48 Total: 0.40 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -3.15 Total: -81.72 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.49 Total: -41.17 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -63.82 2.09 -61.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.904 kcal (2) G-P(sol) polarization free energy of solvation -63.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds