Wall clock time and date at job start Tue Mar 31 2020 01:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 H 1.09003 * 109.47139 * 54.99603 * 3 2 1 5 5 C 1.50699 * 109.47219 * 174.99669 * 3 2 1 6 6 H 1.07999 * 119.99866 * 120.00460 * 5 3 2 7 7 C 1.37873 * 120.00164 * 300.00321 * 5 3 2 8 8 N 1.31514 * 119.99989 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00156 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47431 * 89.99605 * 9 7 5 11 11 H 1.48498 * 109.47174 * 209.99926 * 9 7 5 12 12 H 1.48498 * 109.46937 * 329.99588 * 9 7 5 13 13 N 1.46497 * 109.47133 * 295.00056 * 3 2 1 14 14 C 1.34781 * 120.00372 * 84.99867 * 13 3 2 15 15 O 1.21610 * 119.99547 * 5.26891 * 14 13 3 16 16 C 1.47324 * 120.00230 * 185.27309 * 14 13 3 17 17 C 1.37945 * 125.88892 * 354.91093 * 16 14 13 18 18 C 1.39422 * 107.47362 * 180.02562 * 17 16 14 19 19 C 1.38004 * 107.44992 * 0.02562 * 18 17 16 20 20 C 1.47137 * 125.90741 * 179.97438 * 19 18 17 21 21 O 1.21534 * 120.00565 * 0.02562 * 20 19 18 22 22 O 1.34822 * 119.99667 * 180.02562 * 20 19 18 23 23 N 1.36708 * 125.89103 * 174.91561 * 16 14 13 24 24 C 1.46499 * 125.66253 * 0.03559 * 23 16 14 25 25 H 1.09000 * 109.47025 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47181 * 300.00139 * 1 2 3 27 27 H 1.09003 * 109.46976 * 60.00071 * 1 2 3 28 28 H 1.08995 * 109.47181 * 239.99860 * 2 1 3 29 29 H 1.09003 * 109.46976 * 119.99929 * 2 1 3 30 30 H 0.96996 * 120.00344 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99752 * 264.99597 * 13 3 2 32 32 H 1.07998 * 126.26331 * 359.74371 * 17 16 14 33 33 H 1.08007 * 126.27041 * 179.97438 * 18 17 16 34 34 H 0.96700 * 116.99838 * 180.02562 * 22 20 19 35 35 H 1.09000 * 109.47097 * 94.97615 * 24 23 16 36 36 H 1.08993 * 109.47402 * 214.98074 * 24 23 16 37 37 H 1.09007 * 109.46836 * 334.98146 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8813 1.3820 10 1 6.4416 2.1142 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8417 0.0280 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3047 2.7171 -0.4033 16 6 0.0008 3.2202 -2.6604 17 6 0.7724 3.3149 -3.7999 18 6 -0.0155 3.8973 -4.7918 19 6 -1.2555 4.1491 -4.2407 20 6 -2.4000 4.7606 -4.9343 21 8 -2.2982 5.0923 -6.0991 22 8 -3.5617 4.9528 -4.2777 23 7 -1.2365 3.7310 -2.9383 24 6 -2.3555 3.8185 -1.9969 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8291 -0.0604 2.9503 31 1 2.2720 2.1232 -1.9978 32 1 1.8003 3.0001 -3.9034 33 1 0.2891 4.1128 -5.8054 34 1 -4.2854 5.3576 -4.7752 35 1 -2.3656 4.8058 -1.5352 36 1 -3.2923 3.6571 -2.5300 37 1 -2.2411 3.0575 -1.2248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609912971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:02 Heat of formation + Delta-G solvation = -86.418874 kcal Electronic energy + Delta-G solvation = -21946.373812 eV Core-core repulsion = 18496.437583 eV Total energy + Delta-G solvation = -3449.936229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61295 -39.88589 -38.58780 -36.35971 -35.20341 -33.15235 -32.27220 -31.16708 -29.70886 -27.11000 -26.58703 -24.59955 -23.02752 -21.98170 -20.38648 -19.69026 -19.38622 -18.26512 -17.89584 -16.90398 -16.21794 -15.73563 -15.51572 -15.16395 -14.68293 -14.24809 -13.99726 -13.75827 -13.44667 -12.97302 -12.88295 -12.74863 -12.44876 -12.17029 -11.93122 -11.75175 -11.56816 -11.32478 -11.02671 -11.00819 -10.89331 -10.37513 -10.26670 -9.73077 -9.31406 -9.12100 -8.86949 -8.56608 -8.43507 -7.92985 -6.17539 -4.27083 0.92063 2.12984 2.48092 2.86574 2.98966 3.22757 3.29902 3.31519 3.77394 3.95807 4.32988 4.76112 4.90923 5.14057 5.18107 5.28299 5.32923 5.47217 5.73735 5.93624 6.03091 6.18128 6.29646 6.34446 6.51529 6.55236 6.82676 6.91801 6.96266 7.09377 7.24420 7.30190 7.54147 7.64316 7.66508 7.81891 8.09840 8.51582 8.68484 8.94517 9.40062 10.87916 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.003991 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.268124 B = 7013.544677 C = 7546.107224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.687 5.687 14 C 0.569 3.431 15 O -0.549 6.549 16 C 0.021 3.979 17 C -0.169 4.169 18 C -0.105 4.105 19 C -0.039 4.039 20 C 0.558 3.442 21 O -0.509 6.509 22 O -0.516 6.516 23 N -0.380 5.380 24 C 0.060 3.940 25 H 0.026 0.974 26 H 0.050 0.950 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.265 0.735 31 H 0.393 0.607 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.413 0.587 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 5.554 -10.727 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.335 5.335 14 C 0.353 3.647 15 O -0.429 6.429 16 C -0.100 4.100 17 C -0.194 4.194 18 C -0.131 4.131 19 C -0.152 4.152 20 C 0.403 3.597 21 O -0.397 6.397 22 O -0.329 6.329 23 N -0.053 5.053 24 C -0.080 4.080 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.226 0.774 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.273 0.727 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.104 5.402 -9.675 14.996 hybrid contribution 0.737 0.296 -0.607 0.999 sum -9.368 5.699 -10.282 15.032 Atomic orbital electron populations 1.21827 0.98562 0.98379 1.00824 1.21955 0.92461 0.99675 1.02635 1.18894 0.94536 0.89105 0.80493 0.92869 1.21205 0.90464 1.39240 1.06482 0.91881 1.24870 0.98711 0.94674 0.95313 1.69882 1.35230 1.37521 1.09306 0.86433 0.84676 0.77660 0.78272 1.20550 1.21076 1.19758 1.46287 1.13480 1.54621 1.19064 1.17074 0.83454 0.78938 0.85188 1.90735 1.54016 1.59379 1.38795 1.20966 0.85965 1.05730 0.97361 1.21364 1.00485 1.06105 0.91476 1.21190 0.90516 1.01334 1.00094 1.19352 0.95549 1.14548 0.85751 1.19608 0.81070 0.74999 0.84001 1.90924 1.83136 1.48914 1.16746 1.84653 1.23454 1.76472 1.48322 1.43894 1.10776 1.41655 1.08979 1.22540 0.86860 1.05349 0.93250 0.95503 0.93077 0.94740 0.94730 0.87991 0.92492 0.77364 0.82573 0.82741 0.72743 0.90224 0.89030 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.58 37.16 0.32 -2.60 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.47 2.25 -69.08 -0.16 6.32 16 4 H 0.05 1.47 7.51 -51.93 -0.39 1.08 16 5 C -0.54 -13.55 8.73 -34.44 -0.30 -13.85 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.87 11.29 55.43 0.63 -23.24 16 9 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 N -0.69 -13.56 5.01 -56.04 -0.28 -13.84 16 14 C 0.57 10.88 6.16 -12.56 -0.08 10.80 16 15 O -0.55 -11.79 12.12 5.27 0.06 -11.73 16 16 C 0.02 0.34 6.87 -82.11 -0.56 -0.23 16 17 C -0.17 -2.31 10.32 -39.25 -0.40 -2.72 16 18 C -0.11 -1.37 10.60 -39.23 -0.42 -1.79 16 19 C -0.04 -0.53 6.87 -82.12 -0.56 -1.10 16 20 C 0.56 6.85 8.31 34.34 0.29 7.13 16 21 O -0.51 -7.27 17.66 -19.29 -0.34 -7.61 16 22 O -0.52 -4.49 10.91 -40.83 -0.45 -4.93 16 23 N -0.38 -5.54 3.17 -115.89 -0.37 -5.91 16 24 C 0.06 0.76 9.92 59.85 0.59 1.35 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.14 7.92 -51.93 -0.41 0.72 16 27 H 0.03 0.70 5.76 -51.93 -0.30 0.40 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.39 6.74 7.42 -40.82 -0.30 6.44 16 32 H 0.16 1.77 7.42 -52.49 -0.39 1.38 16 33 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.41 1.57 9.11 45.56 0.42 1.98 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.95 6.42 -51.93 -0.33 0.62 16 37 H 0.11 1.62 6.10 -51.93 -0.32 1.30 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -30.71 312.49 -6.15 -36.86 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -3.57 Total: 8.82 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.52 Total: 1.87 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.02 Total: -42.99 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.72 Total: -24.27 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.71 -6.15 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.559 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds