Wall clock time and date at job start Tue Mar 31 2020 01:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 H 1.09003 * 109.47139 * 54.99603 * 3 2 1 5 5 C 1.50699 * 109.47219 * 174.99669 * 3 2 1 6 6 H 1.07999 * 119.99866 * 120.00460 * 5 3 2 7 7 C 1.37873 * 120.00164 * 300.00321 * 5 3 2 8 8 N 1.31514 * 119.99989 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00156 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47431 * 89.99605 * 9 7 5 11 11 H 1.48498 * 109.47174 * 209.99926 * 9 7 5 12 12 H 1.48498 * 109.46937 * 329.99588 * 9 7 5 13 13 N 1.46497 * 109.47133 * 295.00056 * 3 2 1 14 14 C 1.34781 * 120.00372 * 84.99867 * 13 3 2 15 15 O 1.21610 * 119.99547 * 5.26891 * 14 13 3 16 16 C 1.47324 * 120.00230 * 185.27309 * 14 13 3 17 17 C 1.37945 * 125.88892 * 354.91093 * 16 14 13 18 18 C 1.39422 * 107.47362 * 180.02562 * 17 16 14 19 19 C 1.38004 * 107.44992 * 0.02562 * 18 17 16 20 20 C 1.47137 * 125.90741 * 179.97438 * 19 18 17 21 21 O 1.21534 * 120.00565 * 0.02562 * 20 19 18 22 22 O 1.34822 * 119.99667 * 180.02562 * 20 19 18 23 23 N 1.36708 * 125.89103 * 174.91561 * 16 14 13 24 24 C 1.46499 * 125.66253 * 0.03559 * 23 16 14 25 25 H 1.09000 * 109.47025 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47181 * 300.00139 * 1 2 3 27 27 H 1.09003 * 109.46976 * 60.00071 * 1 2 3 28 28 H 1.08995 * 109.47181 * 239.99860 * 2 1 3 29 29 H 1.09003 * 109.46976 * 119.99929 * 2 1 3 30 30 H 0.96996 * 120.00344 * 180.02562 * 8 7 5 31 31 H 0.97005 * 119.99752 * 264.99597 * 13 3 2 32 32 H 1.07998 * 126.26331 * 359.74371 * 17 16 14 33 33 H 1.08007 * 126.27041 * 179.97438 * 18 17 16 34 34 H 0.96700 * 116.99838 * 180.02562 * 22 20 19 35 35 H 1.09000 * 109.47097 * 94.97615 * 24 23 16 36 36 H 1.08993 * 109.47402 * 214.98074 * 24 23 16 37 37 H 1.09007 * 109.46836 * 334.98146 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8813 1.3820 10 1 6.4416 2.1142 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8417 0.0280 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3047 2.7171 -0.4033 16 6 0.0008 3.2202 -2.6604 17 6 0.7724 3.3149 -3.7999 18 6 -0.0155 3.8973 -4.7918 19 6 -1.2555 4.1491 -4.2407 20 6 -2.4000 4.7606 -4.9343 21 8 -2.2982 5.0923 -6.0991 22 8 -3.5617 4.9528 -4.2777 23 7 -1.2365 3.7310 -2.9383 24 6 -2.3555 3.8185 -1.9969 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8291 -0.0604 2.9503 31 1 2.2720 2.1232 -1.9978 32 1 1.8003 3.0001 -3.9034 33 1 0.2891 4.1128 -5.8054 34 1 -4.2854 5.3576 -4.7752 35 1 -2.3656 4.8058 -1.5352 36 1 -3.2923 3.6571 -2.5300 37 1 -2.2411 3.0575 -1.2248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609912971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:01 Heat of formation + Delta-G solvation = -107.435972 kcal Electronic energy + Delta-G solvation = -21947.285182 eV Core-core repulsion = 18496.437583 eV Total energy + Delta-G solvation = -3450.847599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.70940 -40.91892 -40.04938 -37.23107 -36.95289 -34.58470 -33.77480 -32.85247 -30.95351 -28.90840 -27.62346 -25.92546 -24.70516 -23.22358 -21.85290 -21.02362 -20.79405 -19.26675 -19.14551 -18.24567 -17.32013 -17.26654 -17.16985 -16.40269 -16.32611 -15.64779 -15.25965 -14.92351 -14.62874 -14.54269 -14.18286 -13.98603 -13.83469 -13.50843 -13.29520 -13.16348 -12.97151 -12.85806 -12.67532 -12.63353 -12.14966 -12.06936 -11.98708 -11.58611 -11.05018 -10.86742 -10.51029 -9.91606 -9.79534 -9.42967 -8.14098 -6.30633 -0.17023 1.00579 1.40007 1.48115 1.49535 1.59148 1.98981 1.99517 2.36763 2.38952 2.62913 3.16340 3.75783 3.84541 3.90150 4.29293 4.35198 4.48307 4.50461 4.56074 4.72333 4.75908 4.91858 5.01732 5.07510 5.24749 5.36983 5.42407 5.53789 5.53966 5.62525 5.76188 5.80231 5.87479 5.93292 6.17646 6.75791 6.87629 6.90640 7.32150 7.47839 8.91262 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032502 B = 0.003991 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.268124 B = 7013.544677 C = 7546.107224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.260 1.260 13 N -0.686 5.686 14 C 0.570 3.430 15 O -0.580 6.580 16 C -0.013 4.013 17 C -0.152 4.152 18 C -0.109 4.109 19 C -0.038 4.038 20 C 0.568 3.432 21 O -0.529 6.529 22 O -0.506 6.506 23 N -0.384 5.384 24 C 0.061 3.939 25 H 0.047 0.953 26 H 0.029 0.971 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.437 0.563 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.539 6.099 -12.872 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.184 1.184 13 N -0.335 5.335 14 C 0.357 3.643 15 O -0.462 6.462 16 C -0.133 4.133 17 C -0.177 4.177 18 C -0.135 4.135 19 C -0.152 4.152 20 C 0.413 3.587 21 O -0.419 6.419 22 O -0.321 6.321 23 N -0.057 5.057 24 C -0.079 4.079 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.195 0.805 33 H 0.194 0.806 34 H 0.301 0.699 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.052 5.964 -11.847 16.642 hybrid contribution 0.576 0.202 0.024 0.611 sum -9.476 6.166 -11.822 16.358 Atomic orbital electron populations 1.21661 0.97080 0.99437 0.99992 1.21800 0.93703 0.98979 1.01608 1.18458 0.93850 0.89147 0.80821 0.97647 1.21566 0.91302 1.38940 1.06793 0.90843 1.25705 1.03073 0.94368 0.95042 1.70030 1.36993 1.38364 1.09819 0.85406 0.79391 0.77293 0.78628 1.20615 1.21119 1.18383 1.45975 1.14367 1.54950 1.18172 1.17414 0.82660 0.78100 0.86118 1.90720 1.54723 1.60428 1.40350 1.20526 0.87526 1.08728 0.96523 1.21672 1.01184 1.04414 0.90455 1.21498 0.90156 1.00964 1.00885 1.19762 0.96564 1.13593 0.85292 1.19340 0.81535 0.74407 0.83432 1.90927 1.83656 1.49805 1.17553 1.84588 1.23169 1.76118 1.48208 1.44010 1.10606 1.41523 1.09534 1.22574 0.87379 1.04969 0.92959 0.93369 0.95161 0.94251 0.93836 0.90704 0.92610 0.75768 0.80471 0.80616 0.69947 0.89531 0.86694 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.58 71.98 0.62 -4.69 16 2 C -0.12 -5.75 5.45 30.59 0.17 -5.58 16 3 C 0.28 13.74 2.25 44.25 0.10 13.84 16 4 H 0.01 0.33 7.51 -2.39 -0.02 0.31 16 5 C -0.55 -27.88 8.73 25.60 0.22 -27.66 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -50.70 11.29 21.45 0.24 -50.45 16 9 Si 0.97 40.94 29.54 68.60 2.03 42.97 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 N -0.69 -27.20 5.01 -449.47 -2.25 -29.45 16 14 C 0.57 22.01 6.16 86.63 0.53 22.54 16 15 O -0.58 -25.76 12.12 -4.06 -0.05 -25.81 16 16 C -0.01 -0.41 6.87 40.71 0.28 -0.13 16 17 C -0.15 -3.82 10.32 22.49 0.23 -3.59 16 18 C -0.11 -2.56 10.60 22.50 0.24 -2.32 16 19 C -0.04 -0.95 6.87 40.65 0.28 -0.67 16 20 C 0.57 12.38 8.31 70.16 0.58 12.96 16 21 O -0.53 -13.74 17.66 19.72 0.35 -13.39 16 22 O -0.51 -7.19 10.91 -57.34 -0.63 -7.82 16 23 N -0.38 -10.66 3.17 -520.55 -1.65 -12.31 16 24 C 0.06 1.48 9.92 127.77 1.27 2.75 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.03 1.38 7.92 -2.39 -0.02 1.36 16 27 H 0.04 1.61 5.76 -2.39 -0.01 1.60 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 3.97 5.95 -2.39 -0.01 3.95 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.41 13.61 7.42 -92.70 -0.69 12.92 16 32 H 0.18 3.54 7.42 -2.91 -0.02 3.52 16 33 H 0.18 3.32 8.06 -2.91 -0.02 3.29 16 34 H 0.44 1.78 9.11 -74.06 -0.67 1.11 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 2.17 6.42 -2.39 -0.02 2.15 16 37 H 0.09 2.64 6.10 -2.38 -0.01 2.62 16 Total: -1.00 -67.11 312.49 2.78 -64.33 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.23 Total: 23.07 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 4.97 Total: 8.86 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -3.66 Total: -92.21 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.33 Total: -47.02 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -67.11 2.78 -64.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609912971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.107 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds