Wall clock time and date at job start Tue Mar 31 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 119.99971 * 2 1 4 4 N 1.34777 * 119.99888 * 180.02562 * 2 1 3 5 5 C 1.48149 * 127.83427 * 180.02562 * 4 2 1 6 6 C 1.54393 * 104.71668 * 219.63889 * 5 4 2 7 7 H 1.09002 * 110.34176 * 94.94916 * 6 5 4 8 8 C 1.53004 * 110.34063 * 217.09829 * 6 5 4 9 9 N 1.46501 * 109.46979 * 295.51811 * 8 6 5 10 10 C 1.36940 * 119.99660 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99940 * 0.02562 * 10 9 8 12 12 C 1.38811 * 119.99548 * 180.02562 * 10 9 8 13 13 N 1.31613 * 120.00251 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99579 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47251 * 90.00199 * 14 12 10 16 16 H 1.48501 * 109.47356 * 210.00069 * 14 12 10 17 17 H 1.48503 * 109.47406 * 329.99897 * 14 12 10 18 18 C 1.54281 * 104.96175 * 336.07388 * 6 5 4 19 19 H 1.09002 * 110.34481 * 118.97399 * 18 6 5 20 20 C 1.52996 * 110.34443 * 241.13167 * 18 6 5 21 21 F 1.39900 * 109.47285 * 59.58650 * 20 18 6 22 22 F 1.39900 * 109.47433 * 179.59002 * 20 18 6 23 23 F 1.39905 * 109.47127 * 299.58606 * 20 18 6 24 24 C 1.48430 * 127.98504 * 0.08200 * 4 2 1 25 25 H 1.09004 * 109.47479 * 239.99686 * 1 2 3 26 26 H 1.09001 * 109.47201 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47359 * 119.99433 * 1 2 3 28 28 H 1.08997 * 110.40928 * 100.79739 * 5 4 2 29 29 H 1.08995 * 110.40822 * 338.48163 * 5 4 2 30 30 H 1.09002 * 109.47156 * 55.52305 * 8 6 5 31 31 H 1.08998 * 109.46631 * 175.52068 * 8 6 5 32 32 H 0.96997 * 119.99845 * 0.02562 * 9 8 6 33 33 H 0.96999 * 119.99982 * 180.02562 * 13 12 10 34 34 H 1.09000 * 110.39044 * 21.57722 * 24 4 2 35 35 H 1.09005 * 110.49440 * 259.22060 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6485 -1.3692 -0.0001 6 6 3.8806 -2.5612 -0.9534 7 1 4.1133 -2.2043 -1.9567 8 6 5.0119 -3.4484 -0.4299 9 7 6.2678 -2.6942 -0.4385 10 6 7.4255 -3.2871 -0.0102 11 1 7.4127 -4.3109 0.3336 12 6 8.6154 -2.5723 -0.0178 13 7 8.6308 -1.3245 -0.4362 14 14 10.1946 -3.3813 0.5658 15 1 10.8694 -4.0362 -0.5835 16 1 11.0934 -2.3514 1.1462 17 1 9.8768 -4.3996 1.5990 18 6 2.5461 -3.3353 -0.9555 19 1 2.1240 -3.3603 -1.9602 20 6 2.7554 -4.7577 -0.4321 21 9 3.2593 -4.7053 0.8719 22 9 1.5338 -5.4395 -0.4330 23 9 3.6646 -5.4290 -1.2568 24 6 1.6244 -2.5433 -0.0028 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8901 28 1 3.9985 -1.6113 1.0033 29 1 4.1547 -0.4793 -0.3740 30 1 4.7846 -3.7641 0.5883 31 1 5.1107 -4.3259 -1.0689 32 1 6.2793 -1.7748 -0.7476 33 1 9.4623 -0.8252 -0.4419 34 1 0.6017 -2.5388 -0.3798 35 1 1.6571 -2.9698 0.9998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700925590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:03 Heat of formation + Delta-G solvation = -159.066181 kcal Electronic energy + Delta-G solvation = -23252.253087 eV Core-core repulsion = 19257.309894 eV Total energy + Delta-G solvation = -3994.943193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.22619 -47.67739 -47.55654 -40.04456 -37.86659 -34.69475 -32.68508 -31.09843 -30.30689 -28.62630 -25.80255 -25.25656 -23.45118 -22.10778 -20.30864 -19.59611 -18.51187 -18.20392 -17.46971 -17.02020 -16.68948 -15.64952 -15.49759 -15.32577 -14.72672 -14.50719 -14.18502 -14.08046 -13.85794 -13.71529 -13.60737 -13.42540 -13.17857 -12.79270 -12.75194 -12.31334 -12.15115 -11.89539 -11.83194 -11.61790 -10.98518 -10.79885 -10.68659 -10.42522 -10.03223 -9.91294 -9.68448 -8.87809 -8.80289 -6.89904 -5.74935 -3.04038 2.53250 2.61985 2.95481 3.45605 3.50614 3.52497 3.72396 3.78075 3.95512 4.39454 4.53992 4.57932 4.71154 4.81668 4.99492 5.07331 5.16008 5.18794 5.33357 5.53840 5.56039 5.62203 5.70808 5.98318 6.06012 6.25324 6.28601 6.64557 6.71730 7.45958 7.72077 8.08778 8.42941 9.54478 10.09555 10.44585 11.47809 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.006018 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.736515 B = 4651.792151 C = 6058.854918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.530 3.470 3 O -0.540 6.540 4 N -0.625 5.625 5 C 0.114 3.886 6 C -0.100 4.100 7 H 0.097 0.903 8 C 0.111 3.889 9 N -0.729 5.729 10 C -0.239 4.239 11 H 0.071 0.929 12 C -0.013 4.013 13 N -0.933 5.933 14 Si 0.907 3.093 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.282 1.282 18 C -0.147 4.147 19 H 0.124 0.876 20 C 0.463 3.537 21 F -0.169 7.169 22 F -0.188 7.188 23 F -0.169 7.169 24 C 0.111 3.889 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.023 -4.653 -0.670 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.320 3.680 3 O -0.416 6.416 4 N -0.360 5.360 5 C -0.008 4.008 6 C -0.120 4.120 7 H 0.115 0.885 8 C -0.016 4.016 9 N -0.374 5.374 10 C -0.370 4.370 11 H 0.089 0.911 12 C -0.209 4.209 13 N -0.581 5.581 14 Si 0.738 3.262 15 H -0.217 1.217 16 H -0.218 1.218 17 H -0.207 1.207 18 C -0.168 4.168 19 H 0.143 0.857 20 C 0.408 3.592 21 F -0.151 7.151 22 F -0.170 7.170 23 F -0.150 7.150 24 C -0.013 4.013 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.217 0.783 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.644 -4.102 -0.573 20.076 hybrid contribution 0.988 -0.489 0.190 1.119 sum -18.656 -4.591 -0.383 19.216 Atomic orbital electron populations 1.21911 0.91466 1.05451 1.04099 1.20422 0.90167 0.81741 0.75657 1.90768 1.70778 1.30258 1.49807 1.49120 1.08518 1.04785 1.73533 1.22482 0.79151 0.98651 1.00530 1.22373 0.92264 0.95566 1.01777 0.88452 1.21945 0.85687 0.94293 0.99723 1.42254 1.02593 1.13787 1.78719 1.19192 0.86027 0.96474 1.35284 0.91142 1.24732 0.97829 0.96155 1.02148 1.69655 1.26387 1.08914 1.53161 0.86191 0.83655 0.78082 0.78271 1.21728 1.21788 1.20738 1.23464 1.00818 0.89868 1.02675 0.85747 1.20257 0.73649 0.89009 0.76251 1.93140 1.86806 1.96541 1.38570 1.93170 1.44708 1.82669 1.96414 1.93158 1.66976 1.82692 1.72189 1.22332 0.97161 0.82304 0.99539 0.89448 0.88890 0.89476 0.89727 0.88917 0.93420 0.93458 0.78307 0.93475 0.88882 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.31 36.00 0.34 -1.00 16 2 C 0.53 7.10 8.03 -10.99 -0.09 7.01 16 3 O -0.54 -9.91 17.35 5.55 0.10 -9.82 16 4 N -0.62 -7.96 3.33 -169.05 -0.56 -8.52 16 5 C 0.11 1.79 6.15 -2.40 -0.01 1.78 16 6 C -0.10 -1.49 3.10 -89.22 -0.28 -1.77 16 7 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 8 C 0.11 2.13 4.23 -4.04 -0.02 2.11 16 9 N -0.73 -18.14 5.42 -59.91 -0.32 -18.46 16 10 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 11 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 12 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 13 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 14 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C -0.15 -1.60 3.08 -89.21 -0.27 -1.87 16 19 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 20 C 0.46 5.64 2.34 37.16 0.09 5.73 16 21 F -0.17 -2.36 13.38 2.25 0.03 -2.33 16 22 F -0.19 -2.03 17.16 2.25 0.04 -1.99 16 23 F -0.17 -2.41 14.31 2.25 0.03 -2.38 16 24 C 0.11 1.04 6.26 -2.23 -0.01 1.02 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 27 H 0.09 0.50 7.96 -51.93 -0.41 0.08 16 28 H 0.08 1.45 7.83 -51.93 -0.41 1.04 16 29 H 0.09 1.68 7.88 -51.93 -0.41 1.27 16 30 H 0.05 0.94 5.38 -51.93 -0.28 0.66 16 31 H 0.05 0.94 5.46 -51.93 -0.28 0.66 16 32 H 0.38 10.04 7.44 -40.82 -0.30 9.74 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.09 0.56 7.33 -51.93 -0.38 0.18 16 35 H 0.09 0.79 7.23 -51.93 -0.38 0.41 16 LS Contribution 298.06 15.07 4.49 4.49 Total: -1.00 -33.57 298.06 -5.09 -38.67 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.09 Total: 4.71 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.51 Total: 5.73 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.16 Total: -54.65 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.10 Total: -9.82 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.10 Total: -6.71 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.57 -5.09 -38.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700925590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.399 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds