Wall clock time and date at job start Tue Mar 31 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21284 * 119.99971 * 2 1 4 4 N 1.34777 * 119.99888 * 180.02562 * 2 1 3 5 5 C 1.48149 * 127.83427 * 180.02562 * 4 2 1 6 6 C 1.54393 * 104.71668 * 219.63889 * 5 4 2 7 7 H 1.09002 * 110.34176 * 94.94916 * 6 5 4 8 8 C 1.53004 * 110.34063 * 217.09829 * 6 5 4 9 9 N 1.46501 * 109.46979 * 295.51811 * 8 6 5 10 10 C 1.36940 * 119.99660 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99940 * 0.02562 * 10 9 8 12 12 C 1.38811 * 119.99548 * 180.02562 * 10 9 8 13 13 N 1.31613 * 120.00251 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99579 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47251 * 90.00199 * 14 12 10 16 16 H 1.48501 * 109.47356 * 210.00069 * 14 12 10 17 17 H 1.48503 * 109.47406 * 329.99897 * 14 12 10 18 18 C 1.54281 * 104.96175 * 336.07388 * 6 5 4 19 19 H 1.09002 * 110.34481 * 118.97399 * 18 6 5 20 20 C 1.52996 * 110.34443 * 241.13167 * 18 6 5 21 21 F 1.39900 * 109.47285 * 59.58650 * 20 18 6 22 22 F 1.39900 * 109.47433 * 179.59002 * 20 18 6 23 23 F 1.39905 * 109.47127 * 299.58606 * 20 18 6 24 24 C 1.48430 * 127.98504 * 0.08200 * 4 2 1 25 25 H 1.09004 * 109.47479 * 239.99686 * 1 2 3 26 26 H 1.09001 * 109.47201 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47359 * 119.99433 * 1 2 3 28 28 H 1.08997 * 110.40928 * 100.79739 * 5 4 2 29 29 H 1.08995 * 110.40822 * 338.48163 * 5 4 2 30 30 H 1.09002 * 109.47156 * 55.52305 * 8 6 5 31 31 H 1.08998 * 109.46631 * 175.52068 * 8 6 5 32 32 H 0.96997 * 119.99845 * 0.02562 * 9 8 6 33 33 H 0.96999 * 119.99982 * 180.02562 * 13 12 10 34 34 H 1.09000 * 110.39044 * 21.57722 * 24 4 2 35 35 H 1.09005 * 110.49440 * 259.22060 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6485 -1.3692 -0.0001 6 6 3.8806 -2.5612 -0.9534 7 1 4.1133 -2.2043 -1.9567 8 6 5.0119 -3.4484 -0.4299 9 7 6.2678 -2.6942 -0.4385 10 6 7.4255 -3.2871 -0.0102 11 1 7.4127 -4.3109 0.3336 12 6 8.6154 -2.5723 -0.0178 13 7 8.6308 -1.3245 -0.4362 14 14 10.1946 -3.3813 0.5658 15 1 10.8694 -4.0362 -0.5835 16 1 11.0934 -2.3514 1.1462 17 1 9.8768 -4.3996 1.5990 18 6 2.5461 -3.3353 -0.9555 19 1 2.1240 -3.3603 -1.9602 20 6 2.7554 -4.7577 -0.4321 21 9 3.2593 -4.7053 0.8719 22 9 1.5338 -5.4395 -0.4330 23 9 3.6646 -5.4290 -1.2568 24 6 1.6244 -2.5433 -0.0028 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8901 28 1 3.9985 -1.6113 1.0033 29 1 4.1547 -0.4793 -0.3740 30 1 4.7846 -3.7641 0.5883 31 1 5.1107 -4.3259 -1.0689 32 1 6.2793 -1.7748 -0.7476 33 1 9.4623 -0.8252 -0.4419 34 1 0.6017 -2.5388 -0.3798 35 1 1.6571 -2.9698 0.9998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700925590.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:03 Heat of formation + Delta-G solvation = -183.040166 kcal Electronic energy + Delta-G solvation = -23253.292677 eV Core-core repulsion = 19257.309894 eV Total energy + Delta-G solvation = -3995.982783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.23608 -48.62622 -48.62219 -41.12224 -39.04765 -36.45596 -34.15134 -32.69788 -31.28394 -29.93649 -26.86952 -26.72640 -25.05144 -23.50234 -21.49883 -20.62871 -19.55872 -19.25717 -19.15713 -18.10534 -18.02650 -16.71956 -16.67531 -16.55916 -16.35738 -15.49681 -15.42229 -15.32062 -15.16234 -15.07235 -14.72166 -14.60944 -14.38566 -14.14326 -13.50375 -13.41080 -13.19581 -13.10185 -12.97058 -12.91686 -12.78115 -12.47252 -12.21953 -12.08958 -11.73688 -11.63012 -11.05023 -10.88615 -9.94757 -8.97010 -7.95612 -5.24243 1.46539 1.48361 1.54054 1.56865 1.63345 1.96934 2.53861 2.74850 2.81167 3.00424 3.36906 3.44242 3.58904 3.72740 3.80020 4.06726 4.13601 4.29531 4.33700 4.44440 4.51570 4.66469 4.69447 4.74552 4.82141 4.99246 5.06873 5.15298 5.20759 5.48695 6.26101 6.48356 7.07196 7.32590 8.07153 8.29986 9.27991 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.006018 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.736515 B = 4651.792151 C = 6058.854918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.521 3.479 3 O -0.603 6.603 4 N -0.621 5.621 5 C 0.117 3.883 6 C -0.092 4.092 7 H 0.094 0.906 8 C 0.110 3.890 9 N -0.742 5.742 10 C -0.242 4.242 11 H 0.075 0.925 12 C -0.075 4.075 13 N -0.971 5.971 14 Si 0.973 3.027 15 H -0.286 1.286 16 H -0.296 1.296 17 H -0.269 1.269 18 C -0.135 4.135 19 H 0.161 0.839 20 C 0.463 3.537 21 F -0.183 7.183 22 F -0.174 7.174 23 F -0.183 7.183 24 C 0.111 3.889 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.372 0.628 33 H 0.251 0.749 34 H 0.145 0.855 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.661 -6.347 -0.804 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.314 3.686 3 O -0.485 6.485 4 N -0.355 5.355 5 C -0.007 4.007 6 C -0.112 4.112 7 H 0.112 0.888 8 C -0.016 4.016 9 N -0.385 5.385 10 C -0.374 4.374 11 H 0.093 0.907 12 C -0.267 4.267 13 N -0.622 5.622 14 Si 0.802 3.198 15 H -0.213 1.213 16 H -0.223 1.223 17 H -0.194 1.194 18 C -0.155 4.155 19 H 0.179 0.821 20 C 0.408 3.592 21 F -0.164 7.164 22 F -0.155 7.155 23 F -0.164 7.164 24 C -0.011 4.011 25 H 0.134 0.866 26 H 0.110 0.890 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.204 0.796 33 H 0.060 0.940 34 H 0.163 0.837 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.342 -5.870 -0.700 23.111 hybrid contribution 1.742 -0.022 0.249 1.759 sum -20.601 -5.892 -0.451 21.432 Atomic orbital electron populations 1.21956 0.86236 1.06495 1.06928 1.21621 0.92424 0.80665 0.73907 1.90743 1.72457 1.32573 1.52684 1.49186 1.06910 1.06482 1.72900 1.22132 0.81661 0.97509 0.99358 1.22138 0.93210 0.95043 1.00799 0.88770 1.22092 0.84942 0.94574 0.99948 1.42477 1.03949 1.13684 1.78405 1.19594 0.87203 0.96612 1.33964 0.90705 1.25554 1.01130 0.96802 1.03249 1.69820 1.26775 1.10427 1.55129 0.85150 0.79566 0.77151 0.77974 1.21274 1.22304 1.19385 1.23512 0.98388 0.88422 1.05201 0.82120 1.20405 0.73698 0.89574 0.75474 1.93112 1.87098 1.96609 1.39583 1.93198 1.43558 1.82455 1.96294 1.93127 1.67708 1.83062 1.72538 1.22646 0.99016 0.79575 0.99882 0.86648 0.88967 0.86134 0.91754 0.92507 0.93370 0.93275 0.79610 0.94046 0.83737 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.31 71.23 0.66 -1.18 16 2 C 0.52 13.24 8.03 87.66 0.70 13.95 16 3 O -0.60 -22.80 17.35 -3.04 -0.05 -22.85 16 4 N -0.62 -14.86 3.33 -807.14 -2.69 -17.55 16 5 C 0.12 3.80 6.15 86.54 0.53 4.33 16 6 C -0.09 -2.70 3.10 -9.89 -0.03 -2.73 16 7 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 8 C 0.11 4.27 4.23 86.38 0.37 4.63 16 9 N -0.74 -37.98 5.42 -343.44 -1.86 -39.84 16 10 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 11 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 12 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 13 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 14 Si 0.97 47.06 29.55 68.60 2.03 49.08 16 15 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 16 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 C -0.13 -2.50 3.08 -9.88 -0.03 -2.53 16 19 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 20 C 0.46 10.06 2.34 71.98 0.17 10.22 16 21 F -0.18 -4.80 13.38 44.97 0.60 -4.20 16 22 F -0.17 -3.09 17.16 44.97 0.77 -2.32 16 23 F -0.18 -4.89 14.31 44.97 0.64 -4.25 16 24 C 0.11 1.64 6.26 86.49 0.54 2.18 16 25 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.09 1.16 8.12 -2.39 -0.02 1.14 16 27 H 0.12 0.67 7.96 -2.38 -0.02 0.65 16 28 H 0.06 2.32 7.83 -2.39 -0.02 2.30 16 29 H 0.06 2.23 7.88 -2.39 -0.02 2.21 16 30 H 0.05 1.90 5.38 -2.39 -0.01 1.89 16 31 H 0.05 1.93 5.46 -2.39 -0.01 1.91 16 32 H 0.37 20.42 7.44 -92.71 -0.69 19.73 16 33 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 34 H 0.14 0.77 7.33 -2.39 -0.02 0.75 16 35 H 0.09 1.33 7.23 -2.38 -0.02 1.31 16 Total: -1.00 -77.08 298.06 4.39 -72.69 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.44 Total: 17.77 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 4.22 Total: 12.04 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -4.26 Total: -117.96 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 9 Polarization: -12.79 SS G_CDS: 2.02 Total: -10.77 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -77.08 4.39 -72.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700925590.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.349 kcal (2) G-P(sol) polarization free energy of solvation -77.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds