Wall clock time and date at job start Tue Mar 31 2020 02:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 120.00137 * 2 1 4 4 N 1.34782 * 120.00270 * 180.02562 * 2 1 3 5 5 C 1.47417 * 125.64990 * 180.02562 * 4 2 1 6 6 C 1.54913 * 104.83426 * 204.08106 * 5 4 2 7 7 H 1.08996 * 111.04148 * 204.90585 * 6 5 4 8 8 C 1.52999 * 111.00159 * 81.06171 * 6 5 4 9 9 N 1.46496 * 109.47119 * 72.81023 * 8 6 5 10 10 C 1.36935 * 120.00221 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00176 * 0.02562 * 10 9 8 12 12 C 1.38813 * 120.00382 * 179.97438 * 10 9 8 13 13 N 1.31618 * 120.00240 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99684 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46845 * 90.00337 * 14 12 10 16 16 H 1.48503 * 109.47399 * 209.99827 * 14 12 10 17 17 H 1.48498 * 109.47295 * 330.00433 * 14 12 10 18 18 C 1.55161 * 101.57984 * 322.99047 * 6 5 4 19 19 H 1.08997 * 110.71816 * 277.14095 * 18 6 5 20 20 C 1.52997 * 110.71951 * 153.86219 * 18 6 5 21 21 F 1.39904 * 109.47053 * 60.00278 * 20 18 6 22 22 F 1.39903 * 109.46793 * 179.97438 * 20 18 6 23 23 F 1.39903 * 109.47210 * 299.99980 * 20 18 6 24 24 C 1.47020 * 125.64555 * 359.97070 * 4 2 1 25 25 H 1.08998 * 109.46994 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46841 * 299.99312 * 1 2 3 27 27 H 1.08997 * 109.47462 * 59.99781 * 1 2 3 28 28 H 1.09000 * 110.37162 * 85.24067 * 5 4 2 29 29 H 1.09000 * 110.36836 * 322.91817 * 5 4 2 30 30 H 1.08998 * 109.47493 * 312.80794 * 8 6 5 31 31 H 1.09009 * 109.46622 * 192.80584 * 8 6 5 32 32 H 0.97000 * 120.00132 * 359.97438 * 9 8 6 33 33 H 0.97000 * 119.99717 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.88357 * 59.56828 * 24 4 2 35 35 H 1.08999 * 109.88417 * 298.40862 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6479 -1.3123 -0.0001 6 6 3.9083 -2.7114 -0.6119 7 1 4.8655 -3.1123 -0.2787 8 6 3.8391 -2.6634 -2.1396 9 7 5.0285 -1.9857 -2.6613 10 6 5.1874 -1.8239 -4.0117 11 1 4.4356 -2.1955 -4.6922 12 6 6.3141 -1.1813 -4.5060 13 7 6.4666 -1.0253 -5.8040 14 14 7.6135 -0.5367 -3.3289 15 1 8.6280 -1.5933 -3.0847 16 1 8.2723 0.6543 -3.9227 17 1 6.9732 -0.1589 -2.0434 18 6 2.7281 -3.5316 -0.0272 19 1 2.9603 -3.8771 0.9801 20 6 2.3837 -4.7104 -0.9397 21 9 3.4985 -5.5469 -1.0618 22 9 1.3187 -5.4311 -0.3885 23 9 2.0192 -4.2316 -2.2027 24 6 1.5747 -2.5066 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.0335 -1.2659 1.0184 29 1 4.1059 -0.5379 -0.6155 30 1 2.9465 -2.1179 -2.4459 31 1 3.7974 -3.6790 -2.5335 32 1 5.7036 -1.6516 -2.0501 33 1 7.2541 -0.5766 -6.1494 34 1 0.9485 -2.6301 -0.8841 35 1 0.9780 -2.6434 0.9013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700925591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:04 Heat of formation + Delta-G solvation = -187.460915 kcal Electronic energy + Delta-G solvation = -23447.752833 eV Core-core repulsion = 19451.578352 eV Total energy + Delta-G solvation = -3996.174481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.17596 -48.65213 -48.55203 -41.28350 -39.08858 -36.56741 -34.16743 -33.06785 -31.45107 -30.04621 -27.32884 -26.75595 -24.62494 -23.31281 -21.67304 -20.60987 -19.80713 -19.51288 -19.21622 -18.45217 -17.87316 -17.13289 -16.69850 -16.37695 -15.91626 -15.74794 -15.43842 -15.29826 -14.97106 -14.91233 -14.73578 -14.67787 -14.52208 -14.17622 -13.90851 -13.58508 -13.39918 -13.37410 -13.20148 -12.96664 -12.83015 -12.40528 -12.22087 -12.18688 -11.88552 -11.70438 -11.05888 -11.00174 -9.76906 -9.34601 -8.06711 -5.40924 1.33754 1.38745 1.45110 1.55912 1.61905 2.03682 2.44709 2.60827 2.77059 2.97045 3.24011 3.37076 3.52296 3.66221 3.81814 3.89621 4.02820 4.10207 4.39227 4.46882 4.49588 4.60563 4.70427 4.71229 4.77717 4.92123 5.00891 5.03725 5.21584 5.70480 6.16254 6.42093 7.03140 7.08378 7.77418 7.96917 9.14925 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.007255 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.053579 B = 3858.371537 C = 5110.286833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.516 3.484 3 O -0.601 6.601 4 N -0.615 5.615 5 C 0.110 3.890 6 C -0.103 4.103 7 H 0.125 0.875 8 C 0.153 3.847 9 N -0.755 5.755 10 C -0.236 4.236 11 H 0.052 0.948 12 C -0.063 4.063 13 N -0.983 5.983 14 Si 0.956 3.044 15 H -0.270 1.270 16 H -0.297 1.297 17 H -0.253 1.253 18 C -0.129 4.129 19 H 0.178 0.822 20 C 0.461 3.539 21 F -0.185 7.185 22 F -0.176 7.176 23 F -0.188 7.188 24 C 0.105 3.895 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.019 0.981 31 H 0.039 0.961 32 H 0.366 0.634 33 H 0.259 0.741 34 H 0.081 0.919 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.553 -7.964 20.144 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.308 3.692 3 O -0.483 6.483 4 N -0.349 5.349 5 C -0.013 4.013 6 C -0.122 4.122 7 H 0.143 0.857 8 C 0.027 3.973 9 N -0.401 5.401 10 C -0.367 4.367 11 H 0.070 0.930 12 C -0.255 4.255 13 N -0.634 5.634 14 Si 0.782 3.218 15 H -0.196 1.196 16 H -0.224 1.224 17 H -0.178 1.178 18 C -0.149 4.149 19 H 0.195 0.805 20 C 0.406 3.594 21 F -0.166 7.166 22 F -0.157 7.157 23 F -0.169 7.169 24 C -0.018 4.018 25 H 0.124 0.876 26 H 0.131 0.869 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.200 0.800 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.392 -7.404 19.906 25.108 hybrid contribution 1.086 0.390 -0.595 1.298 sum -12.306 -7.014 19.311 23.949 Atomic orbital electron populations 1.21922 0.87306 1.06540 1.06162 1.21437 0.92255 0.81222 0.74267 1.90725 1.72195 1.32589 1.52757 1.48562 1.07186 1.06263 1.72901 1.22285 0.81462 0.96033 1.01535 1.22658 0.99878 0.94972 0.94707 0.85739 1.21221 0.88632 0.95862 0.91592 1.42649 1.23543 1.70788 1.03110 1.18968 1.04010 1.30318 0.83416 0.93021 1.25537 1.00959 1.01614 0.97355 1.69890 1.30565 1.49803 1.13096 0.85403 0.79385 0.77836 0.79145 1.19564 1.22367 1.17800 1.23651 0.97386 0.91941 1.01909 0.80465 1.20434 0.74404 0.84555 0.79986 1.93202 1.53162 1.74115 1.96164 1.93203 1.57348 1.80123 1.85040 1.93197 1.91738 1.87839 1.44147 1.22232 0.94386 0.79433 1.05707 0.87566 0.86868 0.88608 0.88109 0.93047 0.96338 0.94373 0.80043 0.93266 0.90048 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.21 71.23 0.73 -1.71 16 2 C 0.52 13.85 7.96 87.65 0.70 14.55 16 3 O -0.60 -23.03 17.36 -3.05 -0.05 -23.09 16 4 N -0.62 -14.27 3.26 -811.80 -2.65 -16.92 16 5 C 0.11 2.86 6.33 86.86 0.55 3.41 16 6 C -0.10 -2.53 2.74 -9.40 -0.03 -2.56 16 7 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 8 C 0.15 5.70 4.12 86.38 0.36 6.06 16 9 N -0.75 -35.92 5.17 -343.45 -1.78 -37.69 16 10 C -0.24 -14.01 10.47 84.03 0.88 -13.13 16 11 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 12 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 13 N -0.98 -64.89 13.97 21.65 0.30 -64.59 16 14 Si 0.96 46.69 27.73 68.60 1.90 48.59 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 17 H -0.25 -11.26 6.52 99.48 0.65 -10.61 16 18 C -0.13 -2.02 2.90 -9.60 -0.03 -2.05 16 19 H 0.18 1.26 8.14 -2.39 -0.02 1.24 16 20 C 0.46 9.45 2.35 71.98 0.17 9.61 16 21 F -0.19 -4.47 16.54 44.97 0.74 -3.73 16 22 F -0.18 -3.05 17.22 44.97 0.77 -2.27 16 23 F -0.19 -5.14 12.66 44.97 0.57 -4.57 16 24 C 0.10 1.53 4.97 86.73 0.43 1.96 16 25 H 0.11 0.94 6.60 -2.39 -0.02 0.92 16 26 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 1.84 7.75 -2.39 -0.02 1.82 16 30 H 0.02 0.76 7.59 -2.39 -0.02 0.74 16 31 H 0.04 1.49 5.31 -2.38 -0.01 1.48 16 32 H 0.37 16.39 5.53 -92.71 -0.51 15.88 16 33 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 34 H 0.08 1.27 7.00 -2.39 -0.02 1.25 16 35 H 0.13 0.81 8.09 -2.39 -0.02 0.79 16 Total: -1.00 -82.20 297.17 4.60 -77.61 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.56 Total: 13.88 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 4.22 Total: 12.78 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -4.12 Total: -119.20 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 9 Polarization: -12.66 SS G_CDS: 2.09 Total: -10.57 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.90 Total: 48.59 kcal Total: -82.20 4.60 -77.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700925591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.854 kcal (2) G-P(sol) polarization free energy of solvation -82.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds