Wall clock time and date at job start Tue Mar 31 2020 02:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21276 * 120.00271 * 2 1 4 4 N 1.34777 * 119.99561 * 179.97438 * 2 1 3 5 5 C 1.48148 * 127.84210 * 359.97438 * 4 2 1 6 6 C 1.54386 * 104.61933 * 140.41413 * 5 4 2 7 7 H 1.09002 * 110.34435 * 264.99880 * 6 5 4 8 8 C 1.53006 * 110.43199 * 142.78259 * 6 5 4 9 9 F 1.39899 * 109.47233 * 302.94100 * 8 6 5 10 10 F 1.39904 * 109.46648 * 62.93886 * 8 6 5 11 11 F 1.39899 * 109.47210 * 182.93330 * 8 6 5 12 12 C 1.54281 * 104.96065 * 23.87099 * 6 5 4 13 13 H 1.08992 * 110.34788 * 118.86884 * 12 6 5 14 14 C 1.53004 * 110.34348 * 241.02308 * 12 6 5 15 15 N 1.46501 * 109.47480 * 184.99653 * 14 12 6 16 16 C 1.36938 * 120.00094 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99740 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00405 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99693 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46999 * 90.00037 * 20 18 16 22 22 H 1.48496 * 109.47162 * 209.99518 * 20 18 16 23 23 H 1.48499 * 109.47277 * 329.99929 * 20 18 16 24 24 C 1.48151 * 127.83729 * 179.97438 * 4 2 1 25 25 H 1.08997 * 109.47348 * 270.00342 * 1 2 3 26 26 H 1.09002 * 109.46688 * 30.00323 * 1 2 3 27 27 H 1.09005 * 109.47205 * 149.99712 * 1 2 3 28 28 H 1.09004 * 110.40344 * 21.63277 * 5 4 2 29 29 H 1.08994 * 110.40868 * 259.20056 * 5 4 2 30 30 H 1.09001 * 109.46999 * 305.00274 * 14 12 6 31 31 H 1.09010 * 109.46964 * 64.99519 * 14 12 6 32 32 H 0.97006 * 119.99847 * 0.02562 * 15 14 12 33 33 H 0.97003 * 120.00225 * 179.97438 * 19 18 16 34 34 H 1.09005 * 110.40236 * 100.79931 * 24 4 2 35 35 H 1.08998 * 110.50513 * 338.42164 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.6220 -2.5393 0.0017 6 6 2.5408 -3.3351 -0.9501 7 1 2.1167 -3.3595 -1.9539 8 6 2.7484 -4.7577 -0.4266 9 9 3.2778 -4.7059 0.8673 10 9 1.5212 -5.4291 -0.4018 11 9 3.6357 -5.4390 -1.2667 12 6 3.8770 -2.5638 -0.9511 13 1 4.6808 -3.1977 -0.5769 14 6 4.2042 -2.0685 -2.3613 15 7 5.5296 -1.4443 -2.3644 16 6 6.0384 -0.9235 -3.5242 17 1 5.4628 -0.9733 -4.4366 18 6 7.2944 -0.3326 -3.5272 19 7 7.9961 -0.2723 -2.4153 20 14 7.9889 0.3772 -5.1095 21 1 7.5913 1.8030 -5.2288 22 1 9.4703 0.2766 -5.0888 23 1 7.4571 -0.3837 -6.2686 24 6 3.6485 -1.3694 0.0001 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 0.5989 -2.5332 -0.3746 29 1 1.6563 -2.9628 1.0054 30 1 4.1976 -2.9109 -3.0529 31 1 3.4576 -1.3375 -2.6720 32 1 6.0467 -1.3998 -1.5449 33 1 8.8740 0.1403 -2.4175 34 1 3.9992 -1.6102 1.0037 35 1 4.1561 -0.4812 -0.3762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700925592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:07 Heat of formation + Delta-G solvation = -174.637323 kcal Electronic energy + Delta-G solvation = -22990.791693 eV Core-core repulsion = 18995.173284 eV Total energy + Delta-G solvation = -3995.618409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.18798 -47.68776 -47.61605 -40.07040 -37.83230 -34.68662 -32.63956 -31.18202 -30.26288 -28.61848 -25.86851 -25.38482 -23.45245 -21.81021 -20.34697 -19.54716 -18.55013 -18.19769 -17.76472 -17.18632 -16.76929 -15.66786 -15.36895 -14.75765 -14.60553 -14.52670 -14.24611 -14.07379 -13.93075 -13.77616 -13.75551 -13.43803 -13.34144 -12.84888 -12.74795 -12.54801 -12.20167 -11.90352 -11.77395 -11.61331 -11.09135 -10.88855 -10.76847 -10.56804 -10.06528 -9.84114 -9.71912 -8.90924 -8.77090 -6.95957 -5.77124 -3.06882 2.52019 2.67948 2.96601 3.45088 3.49659 3.51380 3.67679 3.71862 3.87777 4.39129 4.49817 4.60178 4.71500 4.84932 5.01640 5.09047 5.15033 5.23136 5.27250 5.55673 5.60076 5.63207 5.72174 5.94970 6.04644 6.21218 6.29999 6.57106 6.68042 7.51946 7.69178 8.18040 8.40597 9.52320 10.06396 10.41071 11.45603 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.005839 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.267945 B = 4794.129427 C = 6099.324957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.531 3.469 3 O -0.534 6.534 4 N -0.620 5.620 5 C 0.111 3.889 6 C -0.150 4.150 7 H 0.129 0.871 8 C 0.461 3.539 9 F -0.180 7.180 10 F -0.186 7.186 11 F -0.175 7.175 12 C -0.101 4.101 13 H 0.098 0.902 14 C 0.165 3.835 15 N -0.730 5.730 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.108 3.892 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.073 0.927 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.114 -8.898 7.073 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.320 3.680 3 O -0.410 6.410 4 N -0.355 5.355 5 C -0.013 4.013 6 C -0.171 4.171 7 H 0.147 0.853 8 C 0.407 3.593 9 F -0.162 7.162 10 F -0.167 7.167 11 F -0.156 7.156 12 C -0.121 4.121 13 H 0.116 0.884 14 C 0.037 3.963 15 N -0.374 5.374 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.014 4.014 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.219 0.781 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.821 -8.176 6.914 19.940 hybrid contribution 0.652 -0.056 -0.533 0.843 sum -16.170 -8.232 6.381 19.234 Atomic orbital electron populations 1.21899 0.91519 1.04856 1.04582 1.20412 0.90108 0.81790 0.75676 1.90787 1.70591 1.30203 1.49386 1.48978 1.08126 1.04713 1.73700 1.22285 0.97410 0.82515 0.99130 1.23516 1.00984 0.89384 1.03211 0.85300 1.20339 0.73839 0.89334 0.75795 1.93182 1.86701 1.96738 1.39530 1.93177 1.44140 1.83042 1.96365 1.93233 1.69112 1.82102 1.71143 1.22399 0.93891 0.96242 0.99557 0.88391 1.20660 0.89496 0.95467 0.90685 1.42291 1.14795 1.69856 1.10476 1.19172 0.99148 1.30461 0.88526 0.91174 1.24739 0.97255 1.01539 0.97174 1.69651 1.12961 1.49762 1.25600 0.86178 0.78152 0.79059 0.82714 1.21652 1.21724 1.20751 1.22501 0.80202 0.99801 0.98880 0.88925 0.88771 0.90247 0.88747 0.89867 0.95731 0.95875 0.78148 0.93424 0.90909 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.96 36.01 0.36 -1.11 16 2 C 0.53 7.59 8.02 -10.98 -0.09 7.50 16 3 O -0.53 -10.51 17.37 5.56 0.10 -10.41 16 4 N -0.62 -8.16 3.32 -169.30 -0.56 -8.72 16 5 C 0.11 1.03 6.22 -2.41 -0.01 1.02 16 6 C -0.15 -1.65 2.72 -89.22 -0.24 -1.89 16 7 H 0.13 1.27 7.71 -51.93 -0.40 0.87 16 8 C 0.46 5.16 2.52 37.16 0.09 5.25 16 9 F -0.18 -2.12 16.05 2.25 0.04 -2.08 16 10 F -0.19 -1.90 17.14 2.25 0.04 -1.87 16 11 F -0.17 -2.31 17.00 2.25 0.04 -2.27 16 12 C -0.10 -1.51 2.38 -89.22 -0.21 -1.72 16 13 H 0.10 1.51 7.40 -51.93 -0.38 1.12 16 14 C 0.16 3.17 5.37 -4.04 -0.02 3.15 16 15 N -0.73 -18.24 5.21 -59.90 -0.31 -18.55 16 16 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 20 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 C 0.11 1.68 6.47 -2.41 -0.02 1.66 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.50 6.52 -51.93 -0.34 0.16 16 28 H 0.09 0.61 6.52 -51.93 -0.34 0.27 16 29 H 0.08 0.69 7.27 -51.93 -0.38 0.32 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.38 10.06 7.61 -40.82 -0.31 9.75 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.11 2.11 7.32 -51.93 -0.38 1.73 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -33.76 306.37 -4.92 -38.68 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.19 Total: 4.06 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.39 Total: 6.49 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.15 Total: -54.90 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.10 Total: -10.41 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.11 Total: -6.22 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.76 -4.92 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700925592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.953 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds