Wall clock time and date at job start Tue Mar 31 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21276 * 120.00271 * 2 1 4 4 N 1.34777 * 119.99561 * 179.97438 * 2 1 3 5 5 C 1.48148 * 127.84210 * 359.97438 * 4 2 1 6 6 C 1.54386 * 104.61933 * 140.41413 * 5 4 2 7 7 H 1.09002 * 110.34435 * 264.99880 * 6 5 4 8 8 C 1.53006 * 110.43199 * 142.78259 * 6 5 4 9 9 F 1.39899 * 109.47233 * 302.94100 * 8 6 5 10 10 F 1.39904 * 109.46648 * 62.93886 * 8 6 5 11 11 F 1.39899 * 109.47210 * 182.93330 * 8 6 5 12 12 C 1.54281 * 104.96065 * 23.87099 * 6 5 4 13 13 H 1.08992 * 110.34788 * 118.86884 * 12 6 5 14 14 C 1.53004 * 110.34348 * 241.02308 * 12 6 5 15 15 N 1.46501 * 109.47480 * 184.99653 * 14 12 6 16 16 C 1.36938 * 120.00094 * 180.02562 * 15 14 12 17 17 H 1.07997 * 119.99740 * 359.97438 * 16 15 14 18 18 C 1.38810 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00405 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99693 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46999 * 90.00037 * 20 18 16 22 22 H 1.48496 * 109.47162 * 209.99518 * 20 18 16 23 23 H 1.48499 * 109.47277 * 329.99929 * 20 18 16 24 24 C 1.48151 * 127.83729 * 179.97438 * 4 2 1 25 25 H 1.08997 * 109.47348 * 270.00342 * 1 2 3 26 26 H 1.09002 * 109.46688 * 30.00323 * 1 2 3 27 27 H 1.09005 * 109.47205 * 149.99712 * 1 2 3 28 28 H 1.09004 * 110.40344 * 21.63277 * 5 4 2 29 29 H 1.08994 * 110.40868 * 259.20056 * 5 4 2 30 30 H 1.09001 * 109.46999 * 305.00274 * 14 12 6 31 31 H 1.09010 * 109.46964 * 64.99519 * 14 12 6 32 32 H 0.97006 * 119.99847 * 0.02562 * 15 14 12 33 33 H 0.97003 * 120.00225 * 179.97438 * 19 18 16 34 34 H 1.09005 * 110.40236 * 100.79931 * 24 4 2 35 35 H 1.08998 * 110.50513 * 338.42164 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.6220 -2.5393 0.0017 6 6 2.5408 -3.3351 -0.9501 7 1 2.1167 -3.3595 -1.9539 8 6 2.7484 -4.7577 -0.4266 9 9 3.2778 -4.7059 0.8673 10 9 1.5212 -5.4291 -0.4018 11 9 3.6357 -5.4390 -1.2667 12 6 3.8770 -2.5638 -0.9511 13 1 4.6808 -3.1977 -0.5769 14 6 4.2042 -2.0685 -2.3613 15 7 5.5296 -1.4443 -2.3644 16 6 6.0384 -0.9235 -3.5242 17 1 5.4628 -0.9733 -4.4366 18 6 7.2944 -0.3326 -3.5272 19 7 7.9961 -0.2723 -2.4153 20 14 7.9889 0.3772 -5.1095 21 1 7.5913 1.8030 -5.2288 22 1 9.4703 0.2766 -5.0888 23 1 7.4571 -0.3837 -6.2686 24 6 3.6485 -1.3694 0.0001 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 0.5989 -2.5332 -0.3746 29 1 1.6563 -2.9628 1.0054 30 1 4.1976 -2.9109 -3.0529 31 1 3.4576 -1.3375 -2.6720 32 1 6.0467 -1.3998 -1.5449 33 1 8.8740 0.1403 -2.4175 34 1 3.9992 -1.6102 1.0037 35 1 4.1561 -0.4812 -0.3762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700925592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:06 Heat of formation + Delta-G solvation = -198.482282 kcal Electronic energy + Delta-G solvation = -22991.825688 eV Core-core repulsion = 18995.173284 eV Total energy + Delta-G solvation = -3996.652404 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.09452 -48.57054 -48.55230 -41.17982 -39.05562 -36.47278 -34.10626 -32.77557 -31.30028 -29.92993 -27.05849 -26.67614 -25.14210 -23.14008 -21.54276 -20.59322 -19.56007 -19.22733 -19.09209 -18.61949 -17.94544 -16.77263 -16.61382 -16.42956 -15.73416 -15.57622 -15.47072 -15.26429 -15.16160 -14.97962 -14.77068 -14.68677 -14.48863 -14.15271 -13.83676 -13.53137 -13.21295 -13.10866 -13.00464 -12.90610 -12.80105 -12.47289 -12.29771 -12.10901 -11.90895 -11.70995 -11.03735 -10.96906 -9.89758 -9.04918 -7.98341 -5.27757 1.44652 1.47291 1.53913 1.55286 1.65863 1.98503 2.51822 2.74771 2.77400 2.96225 3.35160 3.43518 3.60500 3.78236 3.81849 3.94539 4.11279 4.24920 4.37935 4.39332 4.54950 4.63560 4.69223 4.75853 4.83568 4.91578 5.02871 5.09918 5.22291 5.45591 6.23434 6.50237 7.11040 7.30041 8.03556 8.26095 9.25242 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015220 B = 0.005839 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.267945 B = 4794.129427 C = 6099.324957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.519 3.481 3 O -0.604 6.604 4 N -0.619 5.619 5 C 0.112 3.888 6 C -0.141 4.141 7 H 0.147 0.853 8 C 0.468 3.532 9 F -0.183 7.183 10 F -0.174 7.174 11 F -0.188 7.188 12 C -0.092 4.092 13 H 0.092 0.908 14 C 0.166 3.834 15 N -0.744 5.744 16 C -0.248 4.248 17 H 0.076 0.924 18 C -0.074 4.074 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.266 1.266 24 C 0.109 3.891 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.139 0.861 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.017 0.983 32 H 0.374 0.626 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.780 -10.382 6.791 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.312 3.688 3 O -0.485 6.485 4 N -0.352 5.352 5 C -0.010 4.010 6 C -0.161 4.161 7 H 0.165 0.835 8 C 0.414 3.586 9 F -0.165 7.165 10 F -0.155 7.155 11 F -0.170 7.170 12 C -0.112 4.112 13 H 0.110 0.890 14 C 0.039 3.961 15 N -0.387 5.387 16 C -0.379 4.379 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.191 1.191 24 C -0.015 4.015 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.157 0.843 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.206 0.794 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.555 -9.727 6.620 22.822 hybrid contribution 1.427 0.354 -0.419 1.529 sum -18.127 -9.374 6.200 21.329 Atomic orbital electron populations 1.21941 0.86438 1.06508 1.06682 1.21596 0.92375 0.80853 0.74003 1.90755 1.72367 1.32732 1.52618 1.49087 1.07009 1.06389 1.72764 1.22617 0.98791 0.79576 1.00003 1.23475 0.98691 0.88983 1.04991 0.83498 1.20229 0.73861 0.89134 0.75400 1.93184 1.86833 1.96737 1.39727 1.93204 1.43253 1.82791 1.96290 1.93213 1.69747 1.82414 1.71608 1.22140 0.96239 0.96318 0.96458 0.89019 1.20769 0.86599 0.94916 0.93772 1.42506 1.16742 1.70150 1.09255 1.19601 0.99212 1.29492 0.89625 0.90629 1.25584 0.97967 1.02778 1.00348 1.69810 1.13142 1.51256 1.27690 0.85141 0.77065 0.78102 0.79462 1.21738 1.21934 1.19097 1.22273 0.82091 0.97777 0.99317 0.86394 0.88880 0.86799 0.84343 0.88030 0.94942 0.96533 0.79364 0.93942 0.89713 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.96 71.24 0.71 -1.46 16 2 C 0.52 14.32 8.02 87.66 0.70 15.03 16 3 O -0.60 -24.65 17.37 -3.02 -0.05 -24.70 16 4 N -0.62 -15.31 3.32 -807.94 -2.68 -17.99 16 5 C 0.11 1.64 6.22 86.53 0.54 2.18 16 6 C -0.14 -2.67 2.72 -9.89 -0.03 -2.70 16 7 H 0.15 2.34 7.71 -2.39 -0.02 2.32 16 8 C 0.47 9.11 2.52 71.98 0.18 9.29 16 9 F -0.18 -3.86 16.05 44.97 0.72 -3.14 16 10 F -0.17 -2.89 17.14 44.97 0.77 -2.12 16 11 F -0.19 -4.62 17.00 44.97 0.76 -3.86 16 12 C -0.09 -2.68 2.38 -9.89 -0.02 -2.71 16 13 H 0.09 2.82 7.40 -2.39 -0.02 2.80 16 14 C 0.17 6.41 5.37 86.38 0.46 6.87 16 15 N -0.74 -38.24 5.21 -343.43 -1.79 -40.03 16 16 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 17 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 18 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 19 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 20 Si 0.97 47.29 29.55 68.60 2.03 49.31 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.11 3.42 6.47 86.53 0.56 3.98 16 25 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.11 0.78 6.52 -2.38 -0.02 0.76 16 28 H 0.14 0.90 6.52 -2.38 -0.02 0.88 16 29 H 0.10 1.22 7.27 -2.39 -0.02 1.20 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.37 20.49 7.61 -92.70 -0.71 19.79 16 33 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.05 2.33 7.32 -2.39 -0.02 2.31 16 Total: -1.00 -77.43 306.37 4.88 -72.54 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.42 Total: 17.16 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 4.41 Total: 13.26 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -4.19 Total: -118.47 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 9 Polarization: -11.37 SS G_CDS: 2.26 Total: -9.11 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -77.43 4.88 -72.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700925592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.938 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds