Wall clock time and date at job start Tue Mar 31 2020 02:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47570 * 2 1 4 4 C 1.50704 * 109.47094 * 239.99656 * 2 1 3 5 5 O 1.21274 * 120.00548 * 240.00182 * 4 2 1 6 6 N 1.34782 * 119.99443 * 60.00044 * 4 2 1 7 7 C 1.46498 * 119.99565 * 179.97438 * 6 4 2 8 8 H 1.09003 * 110.77943 * 36.78544 * 7 6 4 9 9 C 1.55160 * 110.71855 * 160.02514 * 7 6 4 10 10 C 1.55124 * 101.48722 * 82.69952 * 9 7 6 11 11 N 1.47425 * 104.72444 * 37.29072 * 10 9 7 12 12 C 1.36936 * 125.64977 * 155.81615 * 11 10 9 13 13 H 1.08002 * 119.99440 * 5.51722 * 12 11 10 14 14 C 1.38806 * 120.00445 * 185.51373 * 12 11 10 15 15 N 1.31622 * 119.99778 * 7.32574 * 14 12 11 16 16 Si 1.86802 * 120.00449 * 187.32749 * 14 12 11 17 17 H 1.48498 * 109.46926 * 265.01265 * 16 14 12 18 18 H 1.48496 * 109.46768 * 25.01215 * 16 14 12 19 19 H 1.48496 * 109.47166 * 145.01278 * 16 14 12 20 20 C 1.47019 * 108.70418 * 335.56047 * 11 10 9 21 21 C 1.53002 * 109.47506 * 119.99862 * 2 1 3 22 22 F 1.39896 * 109.47387 * 179.97438 * 21 2 1 23 23 F 1.39902 * 109.46891 * 300.00400 * 21 2 1 24 24 F 1.39903 * 109.46988 * 59.99586 * 21 2 1 25 25 H 1.09005 * 109.47581 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46954 * 300.00231 * 1 2 3 27 27 H 1.08996 * 109.47510 * 59.99783 * 1 2 3 28 28 H 0.96999 * 120.00221 * 0.02562 * 6 4 2 29 29 H 1.09004 * 111.00376 * 200.93734 * 9 7 6 30 30 H 1.09001 * 111.00439 * 324.74563 * 9 7 6 31 31 H 1.09007 * 110.49094 * 278.45471 * 10 9 7 32 32 H 1.08993 * 110.34397 * 156.05723 * 10 9 7 33 33 H 0.97000 * 119.99978 * 180.02562 * 15 14 12 34 34 H 1.08997 * 109.88756 * 120.70173 * 20 11 10 35 35 H 1.09004 * 109.88245 * 241.86548 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6965 -1.1192 6 7 1.7066 -0.2500 -2.4546 7 6 2.1954 -0.9403 -3.6507 8 1 2.2112 -2.0191 -3.4953 9 6 1.3306 -0.5763 -4.8865 10 6 1.9627 0.7726 -5.3193 11 7 3.4072 0.6042 -5.0777 12 6 4.4076 1.2958 -5.7070 13 1 4.1639 2.0998 -6.3857 14 6 5.7348 0.9638 -5.4725 15 7 6.0303 -0.1038 -4.7615 16 14 7.1015 2.0318 -6.1660 17 1 7.5591 1.4703 -7.4623 18 1 6.5935 3.4113 -6.3758 19 1 8.2383 2.0628 -5.2111 20 6 3.5956 -0.4249 -4.0448 21 6 2.0401 -0.7212 1.2492 22 9 3.4390 -0.7217 1.2489 23 9 1.5737 -0.0617 2.3915 24 9 1.5737 -2.0402 1.2493 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.1493 0.5389 -2.5436 29 1 1.4319 -1.3280 -5.6693 30 1 0.2853 -0.4448 -4.6068 31 1 1.5696 1.5898 -4.7142 32 1 1.7739 0.9576 -6.3767 33 1 6.9578 -0.3356 -4.5973 34 1 4.1939 -1.2445 -4.4428 35 1 4.0893 0.0087 -3.1751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713085306.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:32 Heat of formation + Delta-G solvation = -191.205744 kcal Electronic energy + Delta-G solvation = -23029.792249 eV Core-core repulsion = 19033.455380 eV Total energy + Delta-G solvation = -3996.336869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.12617 -48.62867 -48.57829 -41.15477 -38.95200 -35.60426 -35.02469 -33.57007 -30.66875 -29.12629 -27.39370 -26.53879 -24.69852 -22.12727 -21.85024 -21.36861 -19.82052 -19.47815 -18.86210 -18.62833 -17.76297 -17.17957 -16.77277 -16.14442 -15.70445 -15.59471 -15.36963 -15.23221 -14.99299 -14.87255 -14.75095 -14.69356 -14.30760 -14.04566 -13.83251 -13.41411 -13.32251 -13.01595 -12.90608 -12.73778 -12.40943 -12.20150 -12.14535 -11.91763 -11.89192 -11.72089 -11.01379 -10.75235 -10.10022 -8.88806 -7.82549 -5.22058 1.44317 1.45677 1.46368 1.53516 1.55686 2.04882 2.49552 2.65347 3.01110 3.12681 3.33987 3.61241 3.73775 3.81746 3.85402 4.01442 4.11108 4.32598 4.67292 4.68534 4.71455 4.78129 4.99742 5.07242 5.11733 5.15227 5.41313 5.49893 5.67246 5.74114 6.20074 6.44918 7.07212 7.15958 7.78859 8.41885 9.24429 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.004913 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.167074 B = 5698.182499 C = 6350.985836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.152 4.152 3 H 0.164 0.836 4 C 0.514 3.486 5 O -0.572 6.572 6 N -0.688 5.688 7 C 0.129 3.871 8 H 0.082 0.918 9 C -0.117 4.117 10 C 0.123 3.877 11 N -0.625 5.625 12 C -0.237 4.237 13 H 0.088 0.912 14 C -0.072 4.072 15 N -0.953 5.953 16 Si 0.976 3.024 17 H -0.286 1.286 18 H -0.263 1.263 19 H -0.301 1.301 20 C 0.180 3.820 21 C 0.466 3.534 22 F -0.194 7.194 23 F -0.173 7.173 24 F -0.184 7.184 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.417 0.583 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.243 0.757 34 H 0.021 0.979 35 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.225 2.670 9.070 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 H 0.181 0.819 4 C 0.299 3.701 5 O -0.451 6.451 6 N -0.340 5.340 7 C 0.023 3.977 8 H 0.100 0.900 9 C -0.155 4.155 10 C -0.001 4.001 11 N -0.352 5.352 12 C -0.366 4.366 13 H 0.106 0.894 14 C -0.265 4.265 15 N -0.602 5.602 16 Si 0.804 3.196 17 H -0.213 1.213 18 H -0.188 1.188 19 H -0.228 1.228 20 C 0.054 3.946 21 C 0.411 3.589 22 F -0.175 7.175 23 F -0.154 7.154 24 F -0.165 7.165 25 H 0.088 0.912 26 H 0.120 0.880 27 H 0.130 0.870 28 H 0.255 0.745 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -16.534 1.971 9.133 18.992 hybrid contribution 1.570 0.386 -0.034 1.617 sum -14.964 2.357 9.099 17.671 Atomic orbital electron populations 1.21939 0.86110 1.04966 1.07076 1.22707 1.03615 1.03117 0.88007 0.81874 1.20353 0.79896 0.84349 0.85501 1.90807 1.38869 1.28349 1.87095 1.45605 1.52480 1.31860 1.04006 1.22050 0.94334 0.96378 0.84959 0.90009 1.23031 0.99537 0.97699 0.95259 1.21941 0.83053 0.96019 0.99135 1.44793 1.01851 1.44455 1.44088 1.19490 0.85971 1.10734 1.20452 0.89386 1.25703 0.99846 0.99271 1.01652 1.70216 1.16854 1.27437 1.45698 0.85097 0.78691 0.78841 0.76953 1.21340 1.18766 1.22777 1.21242 0.92495 0.91181 0.89727 1.20167 0.75181 0.77753 0.85763 1.93199 1.31133 1.96404 1.96795 1.93184 1.88292 1.80507 1.53452 1.93169 1.88269 1.38274 1.96786 0.91249 0.87983 0.87041 0.74519 0.89956 0.86327 0.94054 0.93277 0.94776 0.96100 0.99398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.85 71.98 0.64 -1.07 16 2 C -0.15 -3.18 2.71 -11.54 -0.03 -3.21 16 3 H 0.16 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.51 15.87 6.92 87.66 0.61 16.47 16 5 O -0.57 -24.08 14.56 -3.01 -0.04 -24.12 16 6 N -0.69 -19.09 5.00 -436.90 -2.19 -21.27 16 7 C 0.13 4.53 3.24 46.18 0.15 4.68 16 8 H 0.08 3.07 7.70 -2.39 -0.02 3.05 16 9 C -0.12 -3.21 6.65 32.06 0.21 -3.00 16 10 C 0.12 4.26 7.22 86.93 0.63 4.88 16 11 N -0.63 -30.75 3.39 -691.56 -2.35 -33.10 16 12 C -0.24 -13.06 10.26 84.03 0.86 -12.20 16 13 H 0.09 4.54 7.84 -2.91 -0.02 4.52 16 14 C -0.07 -4.16 5.45 84.86 0.46 -3.70 16 15 N -0.95 -59.79 10.46 21.65 0.23 -59.56 16 16 Si 0.98 46.34 29.56 68.60 2.03 48.37 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 20 C 0.18 9.01 5.18 86.73 0.45 9.46 16 21 C 0.47 12.31 2.42 71.98 0.17 12.48 16 22 F -0.19 -6.56 16.40 44.97 0.74 -5.82 16 23 F -0.17 -3.81 16.80 44.97 0.76 -3.06 16 24 F -0.18 -5.43 15.88 44.97 0.71 -4.71 16 25 H 0.07 0.96 7.80 -2.38 -0.02 0.94 16 26 H 0.10 0.84 7.80 -2.38 -0.02 0.82 16 27 H 0.11 0.75 7.56 -2.39 -0.02 0.73 16 28 H 0.42 8.11 8.04 -92.71 -0.75 7.37 16 29 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 34 H 0.02 1.24 6.88 -2.39 -0.02 1.23 16 35 H -0.01 -0.71 7.88 -2.39 -0.02 -0.73 16 Total: -1.00 -78.35 302.81 4.41 -73.94 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 0.38 Total: 4.54 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 4.15 Total: 24.80 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -4.31 Total: -113.93 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.04 Total: -24.12 kcal Atomic # 9 Polarization: -15.80 SS G_CDS: 2.21 Total: -13.60 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -78.35 4.41 -73.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713085306.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.264 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds