Wall clock time and date at job start Tue Mar 31 2020 02:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 119.99612 * 2 1 4 4 H 1.48503 * 109.47164 * 239.72404 * 3 2 1 5 5 H 1.48503 * 109.47446 * 359.72586 * 3 2 1 6 6 H 1.48498 * 109.47137 * 119.72559 * 3 2 1 7 7 C 1.38811 * 119.99894 * 179.72590 * 2 1 3 8 8 H 1.08004 * 119.99269 * 196.40364 * 7 2 1 9 9 N 1.36938 * 120.00369 * 16.40694 * 7 2 1 10 10 C 1.47152 * 120.98223 * 26.74442 * 9 7 2 11 11 C 1.53291 * 108.38463 * 129.44250 * 10 9 7 12 12 O 1.42958 * 109.22268 * 52.30270 * 11 10 9 13 13 C 1.42965 * 114.16766 * 297.42018 * 12 11 10 14 14 H 1.08997 * 109.51063 * 302.65417 * 13 12 11 15 15 C 1.52994 * 109.51183 * 182.55476 * 13 12 11 16 16 N 1.46501 * 109.47195 * 65.00078 * 15 13 12 17 17 C 1.34783 * 119.99965 * 179.97438 * 16 15 13 18 18 O 1.21602 * 119.99712 * 0.02562 * 17 16 15 19 19 C 1.47401 * 119.99742 * 179.97438 * 17 16 15 20 20 N 1.31619 * 125.86916 * 0.03038 * 19 17 16 21 21 C 1.33098 * 109.10066 * 179.97438 * 20 19 17 22 22 C 1.35564 * 108.34784 * 359.97438 * 21 20 19 23 23 N 1.35408 * 107.16239 * 359.77529 * 22 21 20 24 24 H 0.96998 * 126.43974 * 180.22495 * 23 22 21 25 25 C 1.47146 * 120.98166 * 206.46273 * 9 7 2 26 26 H 0.97001 * 120.00132 * 0.27220 * 1 2 3 27 27 H 1.08995 * 109.68009 * 249.17277 * 10 9 7 28 28 H 1.08998 * 109.67837 * 9.67797 * 10 9 7 29 29 H 1.09002 * 109.50962 * 172.22809 * 11 10 9 30 30 H 1.08996 * 109.51452 * 292.32644 * 11 10 9 31 31 H 1.09002 * 109.47062 * 184.99823 * 15 13 12 32 32 H 1.08995 * 109.47304 * 304.99761 * 15 13 12 33 33 H 0.97002 * 120.00114 * 359.97438 * 16 15 13 34 34 H 1.08000 * 125.82697 * 179.97438 * 21 20 19 35 35 H 1.08002 * 126.42245 * 180.02562 * 22 21 20 36 36 H 1.09004 * 109.67983 * 350.28057 * 25 9 7 37 37 H 1.09002 * 109.68257 * 110.83074 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1089 1.6936 -1.2091 5 1 1.2851 2.7465 -0.0067 6 1 3.0988 1.6994 1.2158 7 6 2.0103 -1.2021 0.0058 8 1 3.0573 -1.2198 0.2700 9 7 1.3675 -2.3655 -0.3236 10 6 0.1949 -2.3576 -1.2127 11 6 0.4201 -3.3942 -2.3192 12 8 0.7584 -4.6501 -1.7259 13 6 1.9747 -4.6339 -0.9748 14 1 2.7944 -4.3101 -1.6162 15 6 2.2659 -6.0387 -0.4434 16 7 2.5173 -6.9437 -1.5676 17 6 2.7983 -8.2418 -1.3381 18 8 2.8427 -8.6617 -0.1977 19 6 3.0507 -9.1524 -2.4693 20 7 3.0320 -8.8231 -3.7435 21 6 3.3050 -9.9004 -4.4759 22 6 3.5039 -10.9470 -3.6376 23 7 3.3508 -10.4824 -2.3750 24 1 3.4357 -10.9973 -1.5573 25 6 1.8325 -3.6612 0.1961 26 1 -0.4850 0.8400 -0.0040 27 1 -0.6985 -2.6155 -0.6442 28 1 0.0759 -1.3682 -1.6544 29 1 -0.4913 -3.5030 -2.9071 30 1 1.2335 -3.0655 -2.9661 31 1 3.1439 -6.0083 0.2019 32 1 1.4085 -6.3966 0.1265 33 1 2.4816 -6.6087 -2.4773 34 1 3.3589 -9.9348 -5.5540 35 1 3.7438 -11.9606 -3.9231 36 1 2.7979 -3.5350 0.6863 37 1 1.1068 -4.0528 0.9089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035360545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:28 Heat of formation + Delta-G solvation = 5.333332 kcal Electronic energy + Delta-G solvation = -21527.182269 eV Core-core repulsion = 18113.517465 eV Total energy + Delta-G solvation = -3413.664804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.44031 -39.48063 -38.37641 -35.03642 -34.31668 -32.95194 -31.65221 -30.86714 -29.83392 -27.51468 -25.72370 -23.55199 -23.07965 -21.82410 -21.72948 -20.59733 -19.75480 -18.87950 -16.94813 -16.56498 -16.19034 -15.94562 -15.60928 -14.98428 -14.54578 -14.31551 -14.29864 -14.14341 -13.89264 -13.71640 -13.22118 -13.06035 -12.72593 -12.39312 -11.57606 -11.11491 -10.84720 -10.74267 -10.56675 -10.54837 -10.44638 -10.35763 -10.28371 -9.97590 -9.65886 -9.17574 -9.05501 -8.80160 -8.54494 -6.75534 -5.84431 -3.28706 1.15615 2.37983 2.40176 3.28332 3.35339 3.38725 3.41359 3.42603 4.13970 4.26784 4.43004 4.70616 4.95832 5.07797 5.11511 5.32983 5.47578 5.51054 5.64636 5.80141 5.82393 6.01204 6.16754 6.25798 6.28111 6.38140 6.43817 6.49226 6.74691 6.82474 7.10774 7.31675 7.52457 7.64484 7.70207 7.86756 8.06100 8.33369 9.11088 9.73666 10.30572 11.23750 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.038571 B = 0.003247 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.758866 B = 8620.065967 C = 8778.767619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.907 3.093 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.064 3.936 14 H 0.061 0.939 15 C 0.130 3.870 16 N -0.691 5.691 17 C 0.602 3.398 18 O -0.548 6.548 19 C 0.149 3.851 20 N -0.442 5.442 21 C -0.028 4.028 22 C -0.028 4.028 23 N -0.526 5.526 24 H 0.430 0.570 25 C 0.122 3.878 26 H 0.256 0.744 27 H 0.029 0.971 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.416 0.584 34 H 0.179 0.821 35 H 0.186 0.814 36 H 0.064 0.936 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -19.144 -7.635 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.308 6.308 13 C 0.004 3.996 14 H 0.079 0.921 15 C 0.007 3.993 16 N -0.341 5.341 17 C 0.386 3.614 18 O -0.425 6.425 19 C -0.112 4.112 20 N -0.164 5.164 21 C -0.181 4.181 22 C -0.167 4.167 23 N -0.128 5.128 24 H 0.269 0.731 25 C -0.005 4.005 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.252 0.748 34 H 0.196 0.804 35 H 0.203 0.797 36 H 0.083 0.917 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.531 -18.556 -7.066 20.612 hybrid contribution 0.701 0.123 0.132 0.724 sum 6.232 -18.433 -6.934 20.657 Atomic orbital electron populations 1.70024 1.05272 1.25800 1.53601 1.25055 0.95361 0.98471 1.00701 0.86310 0.78854 0.83056 0.78183 1.20942 1.21549 1.20804 1.19154 0.92459 0.84304 1.42671 0.91387 1.44035 1.33486 1.01127 1.53105 1.21448 0.89120 0.98147 0.89905 1.23330 0.99158 0.84968 0.96369 1.87800 1.41030 1.33126 1.68842 1.22726 0.87832 0.93548 0.95466 0.92140 1.21541 1.02002 0.87594 0.88154 1.45640 1.68744 1.07668 1.12053 1.16459 0.77578 0.81871 0.85528 1.90837 1.53523 1.76541 1.21646 1.22755 1.10703 0.84071 0.93687 1.70252 1.15985 1.30012 1.00169 1.22532 1.06998 0.88193 1.00388 1.22991 1.08569 1.01665 0.83524 1.42967 1.50547 1.09704 1.09564 0.73065 1.21351 0.99005 0.87209 0.92940 0.93430 0.95338 0.88790 0.89974 0.93993 0.89658 0.90182 0.74754 0.80409 0.79667 0.91715 0.95203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.93 11.15 55.49 0.62 -25.31 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.91 21.39 29.58 -169.99 -5.03 16.37 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.96 9.65 -15.06 -0.15 -7.10 16 8 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 9 N -0.59 -14.83 3.05 -172.09 -0.53 -15.36 16 10 C 0.14 3.32 5.44 -3.54 -0.02 3.30 16 11 C 0.04 0.77 6.98 37.31 0.26 1.03 16 12 O -0.39 -7.41 10.33 -35.23 -0.36 -7.77 16 13 C 0.06 1.13 2.80 -26.80 -0.07 1.05 16 14 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.13 1.97 5.35 -4.04 -0.02 1.95 16 16 N -0.69 -9.90 5.50 -61.39 -0.34 -10.24 16 17 C 0.60 8.76 7.81 -12.53 -0.10 8.66 16 18 O -0.55 -9.06 17.09 5.28 0.09 -8.97 16 19 C 0.15 1.88 7.95 -154.52 -1.23 0.65 16 20 N -0.44 -5.58 10.89 -11.26 -0.12 -5.70 16 21 C -0.03 -0.26 11.85 -17.96 -0.21 -0.47 16 22 C -0.03 -0.20 12.00 -16.93 -0.20 -0.40 16 23 N -0.53 -4.77 6.15 -10.78 -0.07 -4.84 16 24 H 0.43 2.98 8.96 -40.82 -0.37 2.61 16 25 C 0.12 2.53 6.00 -3.75 -0.02 2.51 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 2.45 6.16 -51.93 -0.32 2.13 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.42 5.81 8.15 -40.82 -0.33 5.48 16 34 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.19 0.52 8.06 -52.49 -0.42 0.09 16 36 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -32.99 316.39 -7.61 -40.59 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.79 Total: 5.28 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -1.85 Total: 11.18 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.43 Total: -61.45 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.27 Total: -16.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.99 -7.61 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035360545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.925 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds