Wall clock time and date at job start Tue Mar 31 2020 01:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41601 * 114.00114 * 2 1 4 4 C 1.46499 * 120.00302 * 270.00209 * 3 2 1 5 5 C 1.34782 * 119.99292 * 90.00154 * 3 2 1 6 6 O 1.21591 * 119.99323 * 179.97438 * 5 3 2 7 7 N 1.34774 * 120.00403 * 0.02562 * 5 3 2 8 8 C 1.46498 * 119.99933 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.47005 * 179.97438 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.97666 * 9 8 7 11 11 C 1.38280 * 120.13484 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.07150 * 359.67534 * 11 10 9 13 13 C 1.38861 * 119.92830 * 0.59673 * 12 11 10 14 14 O 1.35751 * 120.06597 * 179.69892 * 13 12 11 15 15 C 1.34829 * 117.00376 * 354.17384 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38657 * 120.00083 * 185.03464 * 15 14 13 18 18 N 1.31555 * 119.99797 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99748 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47410 * 90.00109 * 19 17 15 21 21 H 1.48504 * 109.46801 * 209.99865 * 19 17 15 22 22 H 1.48497 * 109.47495 * 329.99577 * 19 17 15 23 23 C 1.38073 * 119.96947 * 89.99513 * 9 8 7 24 24 H 1.08996 * 109.47418 * 299.99866 * 1 2 3 25 25 H 1.09002 * 109.47350 * 59.99627 * 1 2 3 26 26 H 1.09003 * 109.47387 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46992 * 270.00108 * 4 3 2 28 28 H 1.08996 * 109.46699 * 29.99853 * 4 3 2 29 29 H 1.09002 * 109.46907 * 150.00146 * 4 3 2 30 30 H 0.97001 * 119.99467 * 359.97438 * 7 5 3 31 31 H 1.08993 * 109.47130 * 59.99768 * 8 7 5 32 32 H 1.09003 * 109.47080 * 299.99631 * 8 7 5 33 33 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 34 34 H 1.08007 * 119.96121 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.03709 * 180.32387 * 12 11 10 36 36 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.03594 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2790 1.9091 1.1673 6 8 2.7740 3.0197 1.1673 7 7 2.0054 1.2932 2.3345 8 6 2.3028 1.9625 3.6032 9 6 1.9046 1.0678 4.7486 10 6 0.6272 1.1450 5.2737 11 6 0.2582 0.3260 6.3251 12 6 1.1625 -0.5766 6.8497 13 6 2.4473 -0.6525 6.3284 14 8 3.3402 -1.5344 6.8459 15 6 2.9576 -2.2215 7.9411 16 1 1.9511 -2.1186 8.3188 17 6 3.8563 -3.0603 8.5824 18 7 3.4831 -3.7303 9.6512 19 14 5.5975 -3.2378 7.9294 20 1 6.4718 -2.2217 8.5684 21 1 6.1074 -4.5969 8.2426 22 1 5.5974 -3.0361 6.4582 23 6 2.8152 0.1721 5.2730 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.3156 1.7108 -1.5834 28 1 1.5939 1.6337 -2.0283 29 1 2.2209 3.0419 -1.1382 30 1 1.6109 0.4071 2.3343 31 1 1.7441 2.8965 3.6610 32 1 3.3706 2.1738 3.6610 33 1 -0.0833 1.8463 4.8618 34 1 -0.7398 0.3889 6.7332 35 1 0.8720 -1.2196 7.6674 36 1 4.1117 -4.3174 10.0996 37 1 3.8126 0.1128 4.8630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320856499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:09 Heat of formation + Delta-G solvation = -16.512397 kcal Electronic energy + Delta-G solvation = -21282.720565 eV Core-core repulsion = 17835.815708 eV Total energy + Delta-G solvation = -3446.904857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -40.22746 -39.26686 -37.62755 -36.98479 -34.68978 -33.14068 -32.44803 -30.93022 -29.44827 -27.67265 -26.75362 -25.40965 -24.63431 -21.85520 -20.85843 -20.71439 -19.08128 -17.80640 -17.43459 -16.81626 -16.47141 -15.40236 -15.35757 -15.11376 -14.80866 -14.59320 -14.34089 -14.06549 -13.85626 -13.48851 -13.36100 -12.97033 -12.69545 -12.57179 -12.21708 -12.13298 -12.02712 -11.47194 -11.03753 -10.95438 -10.88242 -10.76646 -10.27722 -10.19865 -9.47298 -9.40956 -8.93484 -8.85756 -8.35711 -7.49325 -6.46923 -4.14270 1.54753 1.88408 2.14198 2.94535 3.19113 3.23594 3.35225 3.38096 4.19833 4.37668 4.63524 4.65686 4.89870 4.93702 5.01806 5.03122 5.10957 5.22202 5.27977 5.41517 5.49066 5.63374 5.73214 5.80544 5.99991 6.13962 6.18488 6.40728 6.43269 6.66462 6.75844 6.98889 7.10206 7.19228 7.48454 7.72207 7.82745 7.96818 8.36538 8.88059 9.49095 10.60486 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.003754 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.760364 B = 7456.156686 C = 7850.542401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.145 6.145 3 N -0.502 5.502 4 C 0.107 3.893 5 C 0.713 3.287 6 O -0.578 6.578 7 N -0.729 5.729 8 C 0.184 3.816 9 C -0.076 4.076 10 C -0.186 4.186 11 C -0.078 4.078 12 C -0.212 4.212 13 C 0.156 3.844 14 O -0.215 6.215 15 C -0.391 4.391 16 H 0.107 0.893 17 C 0.065 3.935 18 N -0.878 5.878 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.169 4.169 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.404 0.596 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.280 0.720 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.514 8.212 -17.547 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.149 6.149 3 N -0.286 5.286 4 C -0.034 4.034 5 C 0.415 3.585 6 O -0.456 6.456 7 N -0.383 5.383 8 C 0.061 3.939 9 C -0.076 4.076 10 C -0.205 4.205 11 C -0.096 4.096 12 C -0.231 4.231 13 C 0.104 3.896 14 O -0.120 6.120 15 C -0.467 4.467 16 H 0.124 0.876 17 C -0.139 4.139 18 N -0.515 5.515 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.189 4.189 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.126 0.874 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.719 8.635 -17.419 20.266 hybrid contribution 0.011 -0.781 -0.011 0.781 sum -5.709 7.854 -17.430 19.952 Atomic orbital electron populations 1.23425 0.81780 1.04075 1.01472 1.90672 1.20073 1.07383 1.96745 1.49194 1.62708 1.10781 1.05914 1.21732 1.01287 0.97737 0.82629 1.15843 0.79285 0.83457 0.79881 1.90965 1.51125 1.18502 1.85032 1.45290 1.67214 1.21747 1.04095 1.20066 1.01162 0.93841 0.78865 1.19255 0.94195 0.97359 0.96823 1.20542 0.95848 1.03535 1.00617 1.20798 0.98440 0.94882 0.95498 1.21366 0.93943 1.03285 1.04518 1.19056 0.89079 0.88894 0.92549 1.83578 1.39516 1.47062 1.41863 1.20764 1.00732 1.22957 1.02236 0.87590 1.24467 0.99695 0.95027 0.94710 1.69642 1.36823 1.27119 1.17948 0.86185 0.82590 0.77542 0.80636 1.19796 1.20723 1.18325 1.20101 1.00264 0.98929 0.99562 0.92696 0.92860 0.87366 0.91908 0.90836 0.89437 0.76042 0.90866 0.90759 0.87331 0.86975 0.84822 0.90964 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 11.39 101.05 1.15 1.08 16 2 O -0.14 -1.57 10.55 -11.47 -0.12 -1.69 16 3 N -0.50 -5.94 3.36 -72.07 -0.24 -6.18 16 4 C 0.11 0.93 10.82 59.85 0.65 1.58 16 5 C 0.71 10.25 8.41 -86.92 -0.73 9.52 16 6 O -0.58 -9.85 15.92 5.29 0.08 -9.77 16 7 N -0.73 -9.95 5.52 -66.42 -0.37 -10.31 16 8 C 0.18 2.61 5.80 -5.20 -0.03 2.58 16 9 C -0.08 -1.21 5.25 -104.65 -0.55 -1.76 16 10 C -0.19 -2.88 9.70 -39.53 -0.38 -3.27 16 11 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 12 C -0.21 -4.34 9.17 -39.39 -0.36 -4.70 16 13 C 0.16 3.47 6.65 -39.11 -0.26 3.21 16 14 O -0.22 -5.55 8.59 0.05 0.00 -5.55 16 15 C -0.39 -10.80 9.95 30.89 0.31 -10.50 16 16 H 0.11 2.97 5.44 -52.49 -0.29 2.69 16 17 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 18 N -0.88 -24.99 13.96 55.48 0.77 -24.22 16 19 Si 0.91 21.45 28.62 -169.99 -4.86 16.58 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.17 -3.21 9.65 -39.40 -0.38 -3.59 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.78 7.42 -51.93 -0.39 0.40 16 30 H 0.40 5.25 7.53 -40.82 -0.31 4.95 16 31 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 33 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 36 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 325.53 15.07 4.91 4.91 Total: -1.00 -31.24 325.53 -5.54 -36.78 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.63 Total: 5.31 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.08 Total: -5.86 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 0.17 Total: -40.71 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.04 Total: -17.01 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.86 Total: 16.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.24 -5.54 -36.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320856499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.268 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds