Wall clock time and date at job start Tue Mar 31 2020 01:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41601 * 114.00114 * 2 1 4 4 C 1.46499 * 120.00302 * 270.00209 * 3 2 1 5 5 C 1.34782 * 119.99292 * 90.00154 * 3 2 1 6 6 O 1.21591 * 119.99323 * 179.97438 * 5 3 2 7 7 N 1.34774 * 120.00403 * 0.02562 * 5 3 2 8 8 C 1.46498 * 119.99933 * 180.02562 * 7 5 3 9 9 C 1.50699 * 109.47005 * 179.97438 * 8 7 5 10 10 C 1.38328 * 119.96230 * 269.97666 * 9 8 7 11 11 C 1.38280 * 120.13484 * 180.02562 * 10 9 8 12 12 C 1.38120 * 120.07150 * 359.67534 * 11 10 9 13 13 C 1.38861 * 119.92830 * 0.59673 * 12 11 10 14 14 O 1.35751 * 120.06597 * 179.69892 * 13 12 11 15 15 C 1.34829 * 117.00376 * 354.17384 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38657 * 120.00083 * 185.03464 * 15 14 13 18 18 N 1.31555 * 119.99797 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99748 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47410 * 90.00109 * 19 17 15 21 21 H 1.48504 * 109.46801 * 209.99865 * 19 17 15 22 22 H 1.48497 * 109.47495 * 329.99577 * 19 17 15 23 23 C 1.38073 * 119.96947 * 89.99513 * 9 8 7 24 24 H 1.08996 * 109.47418 * 299.99866 * 1 2 3 25 25 H 1.09002 * 109.47350 * 59.99627 * 1 2 3 26 26 H 1.09003 * 109.47387 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46992 * 270.00108 * 4 3 2 28 28 H 1.08996 * 109.46699 * 29.99853 * 4 3 2 29 29 H 1.09002 * 109.46907 * 150.00146 * 4 3 2 30 30 H 0.97001 * 119.99467 * 359.97438 * 7 5 3 31 31 H 1.08993 * 109.47130 * 59.99768 * 8 7 5 32 32 H 1.09003 * 109.47080 * 299.99631 * 8 7 5 33 33 H 1.08001 * 119.93314 * 0.02562 * 10 9 8 34 34 H 1.08007 * 119.96121 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.03709 * 180.32387 * 12 11 10 36 36 H 0.96998 * 119.99749 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.03594 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3029 1.9628 -1.2687 5 6 2.2790 1.9091 1.1673 6 8 2.7740 3.0197 1.1673 7 7 2.0054 1.2932 2.3345 8 6 2.3028 1.9625 3.6032 9 6 1.9046 1.0678 4.7486 10 6 0.6272 1.1450 5.2737 11 6 0.2582 0.3260 6.3251 12 6 1.1625 -0.5766 6.8497 13 6 2.4473 -0.6525 6.3284 14 8 3.3402 -1.5344 6.8459 15 6 2.9576 -2.2215 7.9411 16 1 1.9511 -2.1186 8.3188 17 6 3.8563 -3.0603 8.5824 18 7 3.4831 -3.7303 9.6512 19 14 5.5975 -3.2378 7.9294 20 1 6.4718 -2.2217 8.5684 21 1 6.1074 -4.5969 8.2426 22 1 5.5974 -3.0361 6.4582 23 6 2.8152 0.1721 5.2730 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.3156 1.7108 -1.5834 28 1 1.5939 1.6337 -2.0283 29 1 2.2209 3.0419 -1.1382 30 1 1.6109 0.4071 2.3343 31 1 1.7441 2.8965 3.6610 32 1 3.3706 2.1738 3.6610 33 1 -0.0833 1.8463 4.8618 34 1 -0.7398 0.3889 6.7332 35 1 0.8720 -1.2196 7.6674 36 1 4.1117 -4.3174 10.0996 37 1 3.8126 0.1128 4.8630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320856499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:05 Heat of formation + Delta-G solvation = -37.480501 kcal Electronic energy + Delta-G solvation = -21283.629810 eV Core-core repulsion = 17835.815708 eV Total energy + Delta-G solvation = -3447.814102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.33779 -40.82511 -38.75083 -38.33789 -35.91032 -34.45978 -34.01464 -32.28504 -31.00999 -28.50986 -27.68909 -27.19141 -25.81443 -23.33616 -22.32111 -21.81572 -20.16334 -19.63017 -18.91798 -17.94652 -17.37425 -16.87886 -16.66820 -16.41450 -15.97637 -15.74682 -15.62247 -15.55928 -15.18284 -14.87501 -14.53178 -14.24934 -14.04980 -13.87233 -13.54527 -13.38244 -13.10834 -12.79199 -12.59695 -12.47883 -12.38333 -11.95325 -11.90203 -11.33692 -11.24466 -10.92279 -10.45891 -9.83297 -9.80385 -9.13534 -8.50964 -6.23594 0.29763 0.63649 0.84917 1.31270 1.34596 1.51087 1.87250 2.27044 2.28637 2.78862 2.98007 3.14939 3.71950 3.84767 4.05579 4.26436 4.35840 4.36334 4.40711 4.44212 4.48634 4.57691 4.63580 4.69475 4.75044 4.85384 4.92107 5.17557 5.29013 5.35951 5.39725 5.62020 5.67499 5.73513 5.84342 5.88544 6.18509 6.83086 6.83774 7.30860 7.57817 8.60505 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021891 B = 0.003754 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.760364 B = 7456.156686 C = 7850.542401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 O -0.158 6.158 3 N -0.502 5.502 4 C 0.102 3.898 5 C 0.709 3.291 6 O -0.610 6.610 7 N -0.726 5.726 8 C 0.190 3.810 9 C -0.062 4.062 10 C -0.157 4.157 11 C -0.073 4.073 12 C -0.226 4.226 13 C 0.119 3.881 14 O -0.246 6.246 15 C -0.399 4.399 16 H 0.085 0.915 17 C 0.012 3.988 18 N -0.922 5.922 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.267 1.267 22 H -0.265 1.265 23 C -0.170 4.170 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.128 0.872 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.408 0.592 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.285 0.715 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 9.749 -20.027 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 O -0.162 6.162 3 N -0.285 5.285 4 C -0.038 4.038 5 C 0.411 3.589 6 O -0.491 6.491 7 N -0.381 5.381 8 C 0.067 3.933 9 C -0.063 4.063 10 C -0.176 4.176 11 C -0.091 4.091 12 C -0.246 4.246 13 C 0.070 3.930 14 O -0.153 6.153 15 C -0.475 4.475 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.192 1.192 22 H -0.189 1.189 23 C -0.190 4.190 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.146 0.854 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.244 0.756 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.094 0.906 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.828 10.181 -19.948 23.414 hybrid contribution 0.083 -1.045 0.543 1.181 sum -6.745 9.136 -19.405 22.484 Atomic orbital electron populations 1.23633 0.79883 1.05549 1.02060 1.90654 1.22060 1.06620 1.96836 1.49225 1.62303 1.11023 1.05935 1.21941 1.02410 0.97392 0.82027 1.15941 0.79164 0.83246 0.80508 1.90943 1.52508 1.19898 1.85704 1.45157 1.67267 1.21823 1.03836 1.19985 1.01220 0.93794 0.78331 1.19458 0.93886 0.96143 0.96809 1.21038 0.95871 1.02142 0.98506 1.21151 0.99144 0.93457 0.95341 1.21410 0.94362 1.04313 1.04505 1.19562 0.89591 0.89828 0.93978 1.83523 1.40774 1.49046 1.42000 1.20718 1.00104 1.23528 1.03156 0.89795 1.25229 1.03424 0.94936 0.95049 1.69719 1.38289 1.28725 1.19523 0.85268 0.78132 0.78185 0.79459 1.19174 1.19172 1.18898 1.20286 1.01175 0.98840 0.98666 0.93038 0.91315 0.85396 0.91599 0.87977 0.89819 0.75610 0.89196 0.91300 0.83172 0.83626 0.87102 0.90560 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.17 11.39 113.37 1.29 1.13 16 2 O -0.16 -3.02 10.55 -38.79 -0.41 -3.43 16 3 N -0.50 -10.71 3.36 -500.18 -1.68 -12.39 16 4 C 0.10 1.55 10.82 127.77 1.38 2.93 16 5 C 0.71 18.89 8.41 179.05 1.51 20.39 16 6 O -0.61 -19.76 15.92 -4.00 -0.06 -19.82 16 7 N -0.73 -17.91 5.52 -482.30 -2.66 -20.57 16 8 C 0.19 4.84 5.80 85.63 0.50 5.33 16 9 C -0.06 -1.82 5.25 -19.88 -0.10 -1.93 16 10 C -0.16 -4.18 9.70 22.30 0.22 -3.96 16 11 C -0.07 -2.26 10.04 22.25 0.22 -2.04 16 12 C -0.23 -9.36 9.17 22.39 0.21 -9.16 16 13 C 0.12 5.39 6.65 22.58 0.15 5.54 16 14 O -0.25 -13.16 8.59 -22.74 -0.20 -13.35 16 15 C -0.40 -23.14 9.95 67.92 0.68 -22.47 16 16 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 17 C 0.01 0.70 5.49 84.83 0.47 1.17 16 18 N -0.92 -54.59 13.96 21.61 0.30 -54.29 16 19 Si 0.97 45.39 28.62 68.60 1.96 47.35 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 23 C -0.17 -6.32 9.65 22.39 0.22 -6.11 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.35 7.42 -2.39 -0.02 1.33 16 30 H 0.41 9.49 7.53 -92.71 -0.70 8.80 16 31 H 0.09 2.06 8.08 -2.39 -0.02 2.04 16 32 H 0.07 1.87 8.09 -2.39 -0.02 1.86 16 33 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.11 5.07 5.64 -2.91 -0.02 5.05 16 36 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -70.45 325.53 4.37 -66.07 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.40 Total: 19.61 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 6.72 Total: -9.18 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -4.04 Total: -87.25 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.67 Total: -36.60 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.96 Total: 47.35 kcal Total: -70.45 4.37 -66.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320856499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.590 kcal (2) G-P(sol) polarization free energy of solvation -70.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds