Wall clock time and date at job start Tue Mar 31 2020 01:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46956 * 2 1 4 4 C 1.50696 * 109.47129 * 119.99934 * 2 1 3 5 5 C 1.38237 * 119.99957 * 120.00584 * 4 2 1 6 6 C 1.38233 * 120.00398 * 180.02562 * 5 4 2 7 7 C 1.38240 * 119.99723 * 359.97438 * 6 5 4 8 8 S 1.76192 * 120.00060 * 179.97438 * 7 6 5 9 9 O 1.42102 * 103.00376 * 203.85753 * 8 7 6 10 10 C 1.81399 * 103.00037 * 90.00256 * 8 7 6 11 11 C 1.53006 * 109.47004 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46626 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.46957 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00340 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47118 * 89.99310 * 17 15 13 19 19 H 1.48494 * 109.47201 * 209.99478 * 17 15 13 20 20 H 1.48498 * 109.47011 * 329.99452 * 17 15 13 21 21 C 1.38236 * 119.99602 * 0.25652 * 7 6 5 22 22 C 1.38230 * 120.00310 * 359.49234 * 21 7 6 23 23 H 1.08998 * 109.47087 * 299.99692 * 1 2 3 24 24 H 1.09004 * 109.47416 * 60.00166 * 1 2 3 25 25 H 1.08999 * 109.46837 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47087 * 240.00308 * 2 1 3 27 27 H 1.08998 * 109.46971 * 60.00237 * 3 2 1 28 28 H 1.09005 * 109.47023 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46922 * 300.00136 * 3 2 1 30 30 H 1.08009 * 119.99839 * 359.97438 * 5 4 2 31 31 H 1.07991 * 120.00282 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47234 * 60.00072 * 10 8 7 33 33 H 1.09001 * 109.47232 * 299.99583 * 10 8 7 34 34 H 1.08993 * 109.46955 * 300.00150 * 11 10 8 35 35 H 1.09000 * 109.47050 * 59.99979 * 11 10 8 36 36 H 1.08993 * 109.47839 * 299.99931 * 12 11 10 37 37 H 1.09000 * 109.47160 * 60.00369 * 12 11 10 38 38 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 39 39 H 1.08006 * 119.99447 * 179.72457 * 21 7 6 40 40 H 1.08005 * 120.00284 * 180.23050 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8272 -1.8342 1.1036 6 6 3.2875 -2.4862 2.2322 7 6 2.9535 -2.0140 3.4878 8 16 3.5397 -2.8454 4.9264 9 8 2.5921 -2.4748 5.9183 10 6 5.1193 -2.0185 5.2604 11 6 5.7657 -2.6360 6.5021 12 6 7.0983 -1.9389 6.7834 13 6 7.7353 -2.5475 8.0061 14 1 7.2394 -3.3513 8.5299 15 6 8.9511 -2.0781 8.4561 16 7 9.5552 -1.0996 7.8180 17 14 9.7410 -2.8329 9.9713 18 1 10.6098 -3.9663 9.5640 19 1 10.5591 -1.8069 10.6662 20 1 8.6819 -3.3258 10.8881 21 6 2.1547 -0.8930 3.6145 22 6 1.6987 -0.2380 2.4859 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 3.0878 -2.2034 0.1226 31 1 3.9081 -3.3645 2.1331 32 1 4.9443 -0.9565 5.4324 33 1 5.7830 -2.1435 4.4047 34 1 5.1020 -2.5107 7.3575 35 1 5.9407 -3.6981 6.3306 36 1 7.7619 -2.0646 5.9279 37 1 6.9237 -0.8767 6.9548 38 1 10.4107 -0.7695 8.1343 39 1 1.8901 -0.5267 4.5955 40 1 1.0776 0.6401 2.5850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108065621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:08 Heat of formation + Delta-G solvation = -46.763035 kcal Electronic energy + Delta-G solvation = -18694.661148 eV Core-core repulsion = 15792.737739 eV Total energy + Delta-G solvation = -2901.923409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.124 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63300 -35.67499 -35.39829 -34.39760 -31.99532 -31.07143 -30.00681 -27.46817 -27.45665 -23.90608 -23.30387 -22.76039 -20.47657 -20.15628 -18.00156 -16.67228 -16.23637 -15.89342 -15.29875 -14.64532 -14.61820 -14.41969 -14.28536 -14.10300 -13.82344 -13.52621 -12.92374 -12.72418 -12.47371 -12.35824 -12.25903 -11.92286 -11.59118 -11.47957 -11.34673 -11.13194 -10.91330 -10.84910 -10.74669 -10.64053 -10.11206 -9.77081 -9.31813 -9.11722 -9.03382 -8.99803 -8.34648 -8.02119 -5.99431 -4.02155 0.87382 1.30171 2.06009 2.94884 3.32799 3.38988 3.43098 3.58851 4.13308 4.35623 4.46932 4.48817 4.86061 4.87629 4.88971 5.10761 5.27691 5.29642 5.34753 5.36270 5.50016 5.53478 5.58989 5.64444 5.67636 5.74722 5.87383 5.90836 5.94063 6.19391 6.24107 6.26576 6.43229 6.54317 6.73764 6.85128 7.06621 7.67586 7.80484 8.00250 8.41774 9.05002 9.61998 11.11844 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.002978 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.451552 B = 9399.610699 C = 9834.142646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.049 4.049 5 C -0.138 4.138 6 C -0.043 4.043 7 C -0.457 4.457 8 S 1.309 4.691 9 O -0.859 6.859 10 C -0.437 4.437 11 C -0.093 4.093 12 C 0.027 3.973 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.052 4.052 22 C -0.132 4.132 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.126 0.874 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.553 -1.759 -18.976 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C -0.203 4.203 4 C -0.050 4.050 5 C -0.157 4.157 6 C -0.062 4.062 7 C -0.553 4.553 8 S 1.508 4.492 9 O -0.855 6.855 10 C -0.574 4.574 11 C -0.132 4.132 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.071 4.071 22 C -0.151 4.151 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.143 0.857 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.882 -2.368 -18.476 24.478 hybrid contribution 0.340 2.129 1.006 2.379 sum -15.542 -0.239 -17.470 23.384 Atomic orbital electron populations 1.21860 0.94187 1.02110 1.02012 1.20201 0.96086 0.96241 0.95355 1.21868 1.01473 0.94926 1.02009 1.20023 0.95588 0.94789 0.94557 1.21154 0.99421 0.96259 0.98842 1.20863 0.96291 0.98279 0.90737 1.27946 1.08157 1.06471 1.12706 1.69328 0.85895 1.10715 0.83215 1.93072 1.55365 1.81670 1.55368 1.27766 1.14143 1.09253 1.06288 1.21317 0.99589 0.99536 0.92782 1.19089 0.89802 0.95585 0.96673 1.21284 1.04426 1.18706 1.11619 0.92515 1.25035 0.97264 0.95064 0.97148 1.69967 1.16484 1.26902 1.40231 0.86581 0.79360 0.78898 0.83114 1.20568 1.21267 1.19833 1.21141 0.93803 0.93121 0.99000 1.21032 1.01486 1.00512 0.92095 0.92410 0.92278 0.92449 0.90248 0.92395 0.92328 0.92270 0.85695 0.84566 0.90051 0.87112 0.92925 0.92059 0.96272 0.96766 0.93004 0.85655 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.01 37.16 0.33 -0.70 16 2 C -0.06 -0.48 3.09 -91.77 -0.28 -0.76 16 3 C -0.15 -1.11 9.01 37.16 0.33 -0.78 16 4 C -0.05 -0.51 4.78 -104.63 -0.50 -1.01 16 5 C -0.14 -1.35 9.67 -39.58 -0.38 -1.73 16 6 C -0.04 -0.44 9.75 -39.58 -0.39 -0.82 16 7 C -0.46 -5.93 5.61 -39.58 -0.22 -6.15 16 8 S 1.31 17.80 13.55 -107.50 -1.46 16.35 16 9 O -0.86 -16.83 16.89 -35.23 -0.60 -17.42 16 10 C -0.44 -7.26 5.88 37.16 0.22 -7.04 16 11 C -0.09 -1.91 5.16 -26.73 -0.14 -2.05 16 12 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 13 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.05 -0.73 9.44 -39.59 -0.37 -1.11 16 22 C -0.13 -1.58 8.71 -39.59 -0.34 -1.92 16 23 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.55 7.88 -51.93 -0.41 0.14 16 27 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.13 0.90 7.95 -52.48 -0.42 0.49 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 33 H 0.11 1.60 8.14 -51.92 -0.42 1.18 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.13 1.96 7.45 -52.48 -0.39 1.57 16 40 H 0.12 1.24 7.10 -52.48 -0.37 0.87 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -36.29 344.93 -9.98 -46.27 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -6.55 Total: -3.43 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: -2.29 Total: -37.26 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.60 Total: -17.42 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 17.80 SS G_CDS: -1.46 Total: 16.35 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.29 -9.98 -46.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108065621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.492 kcal (2) G-P(sol) polarization free energy of solvation -36.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds