Wall clock time and date at job start Tue Mar 31 2020 01:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38167 * 120.01113 * 2 1 4 4 C 1.38443 * 120.02763 * 179.97438 * 3 2 1 5 5 F 1.35102 * 119.96833 * 179.97438 * 4 3 2 6 6 C 1.38489 * 120.05819 * 359.70236 * 4 3 2 7 7 C 1.38113 * 120.03061 * 0.55097 * 6 4 3 8 8 C 1.38690 * 120.01619 * 179.97438 * 2 1 3 9 9 O 1.35960 * 120.03045 * 0.02562 * 8 2 1 10 10 C 1.34251 * 117.00132 * 273.99879 * 9 8 2 11 11 O 1.20828 * 119.99965 * 5.01083 * 10 9 8 12 12 C 1.50696 * 120.00055 * 185.00342 * 10 9 8 13 13 C 1.53001 * 109.47118 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47030 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47030 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46933 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00116 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99836 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99833 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46992 * 60.00339 * 20 18 16 22 22 H 1.48503 * 109.47195 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47426 * 300.00312 * 20 18 16 24 24 H 1.08995 * 109.47180 * 270.02460 * 1 2 3 25 25 H 1.09000 * 109.47378 * 30.02548 * 1 2 3 26 26 H 1.09004 * 109.46839 * 150.02571 * 1 2 3 27 27 H 1.07999 * 119.98054 * 359.97355 * 3 2 1 28 28 H 1.07999 * 119.98283 * 180.29451 * 6 4 3 29 29 H 1.08004 * 120.01500 * 179.75235 * 7 6 4 30 30 H 1.08997 * 109.47490 * 300.00938 * 12 10 9 31 31 H 1.08998 * 109.46944 * 60.00484 * 12 10 9 32 32 H 1.09000 * 109.47462 * 299.99973 * 13 12 10 33 33 H 1.08998 * 109.46931 * 60.00338 * 13 12 10 34 34 H 1.08996 * 109.47809 * 300.00314 * 14 13 12 35 35 H 1.09006 * 109.46923 * 60.00642 * 14 13 12 36 36 H 1.09000 * 109.47462 * 299.99914 * 15 14 13 37 37 H 1.08998 * 109.46931 * 60.00278 * 15 14 13 38 38 H 0.96998 * 119.99587 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1964 0.0000 4 6 3.5826 1.1968 0.0005 5 9 4.2571 2.3674 0.0000 6 6 4.2766 -0.0016 0.0073 7 6 3.5882 -1.1990 0.0020 8 6 2.2008 -1.2009 0.0005 9 8 1.5220 -2.3789 0.0005 10 6 1.1449 -2.8651 1.1938 11 8 1.3312 -2.2170 2.1964 12 6 0.4892 -4.2190 1.2827 13 6 0.1613 -4.5319 2.7440 14 6 -0.5039 -5.9067 2.8343 15 6 -0.8312 -6.2199 4.2957 16 6 -1.4858 -7.5744 4.3847 17 1 -1.6522 -8.1537 3.4886 18 6 -1.8734 -8.0736 5.6101 19 7 -1.6722 -7.3674 6.7013 20 14 -2.6854 -9.7522 5.7204 21 1 -1.7608 -10.7852 5.1884 22 1 -3.0030 -10.0562 7.1389 23 1 -3.9374 -9.7499 4.9218 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6580 2.1316 -0.0004 28 1 5.3565 0.0001 0.0125 29 1 4.1298 -2.1335 0.0033 30 1 -0.4299 -4.2168 0.6968 31 1 1.1674 -4.9775 0.8917 32 1 1.0802 -4.5341 3.3302 33 1 -0.5170 -3.7733 3.1345 34 1 -1.4227 -5.9051 2.2480 35 1 0.1749 -6.6651 2.4439 36 1 0.0879 -6.2218 4.8816 37 1 -1.5097 -5.4616 4.6865 38 1 -1.9445 -7.7188 7.5634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805903158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:19 Heat of formation + Delta-G solvation = -125.870992 kcal Electronic energy + Delta-G solvation = -20600.231844 eV Core-core repulsion = 17128.664880 eV Total energy + Delta-G solvation = -3471.566963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.24391 -41.54241 -39.01910 -36.93427 -35.05837 -33.19708 -32.73219 -30.62315 -29.73584 -27.51052 -26.01693 -23.81158 -22.80689 -21.96739 -20.70798 -20.09647 -18.29102 -17.57693 -17.52134 -16.98573 -16.20584 -15.92425 -15.90971 -14.91625 -14.59759 -14.49106 -14.21403 -13.93075 -13.73448 -13.59561 -13.09809 -12.74462 -12.55294 -12.27666 -12.06629 -11.89197 -11.78974 -11.71319 -11.03502 -10.96669 -10.69433 -10.63997 -10.54194 -10.50514 -9.69464 -9.37616 -9.33761 -9.07791 -8.83834 -8.33825 -5.98740 -4.01588 0.54646 0.77082 2.07911 2.51631 3.24455 3.33439 3.38074 3.40150 3.82549 4.27520 4.29362 4.46100 4.57684 4.67858 4.88314 5.07657 5.14092 5.17699 5.32136 5.32421 5.36750 5.42213 5.67201 5.68647 5.72065 5.78186 5.96470 5.98862 6.11349 6.20775 6.38789 6.55422 6.70574 6.88706 7.11566 7.68809 7.74127 7.83286 8.01579 8.43050 9.05754 9.62359 11.12553 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044519 B = 0.002479 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.793820 B =11293.795336 C =11339.748878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.054 4.054 3 C -0.144 4.144 4 C 0.104 3.896 5 F -0.137 7.137 6 C -0.147 4.147 7 C -0.087 4.087 8 C 0.075 3.925 9 O -0.296 6.296 10 C 0.456 3.544 11 O -0.484 6.484 12 C -0.109 4.109 13 C -0.109 4.109 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.978 15.903 -17.174 25.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.055 4.055 3 C -0.163 4.163 4 C 0.085 3.915 5 F -0.115 7.115 6 C -0.165 4.165 7 C -0.106 4.106 8 C 0.034 3.966 9 O -0.213 6.213 10 C 0.299 3.701 11 O -0.368 6.368 12 C -0.146 4.146 13 C -0.147 4.147 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.160 0.840 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.021 16.166 -16.647 24.897 hybrid contribution -0.192 -0.597 0.192 0.656 sum 8.829 15.569 -16.455 24.313 Atomic orbital electron populations 1.20841 0.89651 1.03770 1.03518 1.19942 0.97282 0.91268 0.97000 1.20905 0.92199 0.98908 1.04270 1.17693 0.90094 0.81387 1.02348 1.91514 1.80285 1.45934 1.93803 1.20978 1.01113 0.90462 1.03991 1.21095 0.92536 0.98854 0.98088 1.18358 0.90203 0.84179 1.03909 1.84668 1.66936 1.34908 1.34744 1.24755 0.75850 0.89095 0.80364 1.90710 1.50763 1.59139 1.36146 1.21663 1.01716 0.88971 1.02267 1.21609 1.02017 0.99738 0.91315 1.21651 0.98691 0.92911 1.01483 1.19091 0.96773 0.96384 0.89427 1.21230 1.39225 1.02788 0.92804 0.92726 1.25042 0.96062 0.97515 0.95919 1.69963 1.47646 1.37698 0.98160 0.86657 0.79911 0.84491 0.76922 1.20257 1.21314 1.20250 0.90076 0.90541 0.90525 0.83960 0.83889 0.84034 0.87548 0.87519 0.91453 0.91428 0.93119 0.93131 0.96548 0.96542 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.61 36.01 0.35 -0.76 16 2 C -0.05 -0.59 5.88 -104.48 -0.61 -1.20 16 3 C -0.14 -1.40 9.68 -39.53 -0.38 -1.78 16 4 C 0.10 1.04 7.30 -39.41 -0.29 0.76 16 5 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 6 C -0.15 -1.36 10.02 -39.53 -0.40 -1.76 16 7 C -0.09 -0.89 9.98 -39.44 -0.39 -1.28 16 8 C 0.08 0.88 4.90 -39.23 -0.19 0.69 16 9 O -0.30 -3.59 9.11 -23.69 -0.22 -3.81 16 10 C 0.46 6.16 7.69 36.00 0.28 6.44 16 11 O -0.48 -8.09 15.72 -18.75 -0.29 -8.38 16 12 C -0.11 -1.34 5.81 -27.88 -0.16 -1.50 16 13 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 14 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.08 0.69 7.53 -51.93 -0.39 0.30 16 27 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -32.22 335.35 -7.74 -39.96 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -5.42 Total: -3.91 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.61 Total: -17.72 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.51 Total: -12.19 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.22 -7.74 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805903158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.914 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds