Wall clock time and date at job start Tue Mar 31 2020 01:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38167 * 120.01113 * 2 1 4 4 C 1.38443 * 120.02763 * 179.97438 * 3 2 1 5 5 F 1.35102 * 119.96833 * 179.97438 * 4 3 2 6 6 C 1.38489 * 120.05819 * 359.70236 * 4 3 2 7 7 C 1.38113 * 120.03061 * 0.55097 * 6 4 3 8 8 C 1.38690 * 120.01619 * 179.97438 * 2 1 3 9 9 O 1.35960 * 120.03045 * 0.02562 * 8 2 1 10 10 C 1.34251 * 117.00132 * 273.99879 * 9 8 2 11 11 O 1.20828 * 119.99965 * 5.01083 * 10 9 8 12 12 C 1.50696 * 120.00055 * 185.00342 * 10 9 8 13 13 C 1.53001 * 109.47118 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47030 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47030 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46933 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00116 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99836 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99833 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46992 * 60.00339 * 20 18 16 22 22 H 1.48503 * 109.47195 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47426 * 300.00312 * 20 18 16 24 24 H 1.08995 * 109.47180 * 270.02460 * 1 2 3 25 25 H 1.09000 * 109.47378 * 30.02548 * 1 2 3 26 26 H 1.09004 * 109.46839 * 150.02571 * 1 2 3 27 27 H 1.07999 * 119.98054 * 359.97355 * 3 2 1 28 28 H 1.07999 * 119.98283 * 180.29451 * 6 4 3 29 29 H 1.08004 * 120.01500 * 179.75235 * 7 6 4 30 30 H 1.08997 * 109.47490 * 300.00938 * 12 10 9 31 31 H 1.08998 * 109.46944 * 60.00484 * 12 10 9 32 32 H 1.09000 * 109.47462 * 299.99973 * 13 12 10 33 33 H 1.08998 * 109.46931 * 60.00338 * 13 12 10 34 34 H 1.08996 * 109.47809 * 300.00314 * 14 13 12 35 35 H 1.09006 * 109.46923 * 60.00642 * 14 13 12 36 36 H 1.09000 * 109.47462 * 299.99914 * 15 14 13 37 37 H 1.08998 * 109.46931 * 60.00278 * 15 14 13 38 38 H 0.96998 * 119.99587 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1964 0.0000 4 6 3.5826 1.1968 0.0005 5 9 4.2571 2.3674 0.0000 6 6 4.2766 -0.0016 0.0073 7 6 3.5882 -1.1990 0.0020 8 6 2.2008 -1.2009 0.0005 9 8 1.5220 -2.3789 0.0005 10 6 1.1449 -2.8651 1.1938 11 8 1.3312 -2.2170 2.1964 12 6 0.4892 -4.2190 1.2827 13 6 0.1613 -4.5319 2.7440 14 6 -0.5039 -5.9067 2.8343 15 6 -0.8312 -6.2199 4.2957 16 6 -1.4858 -7.5744 4.3847 17 1 -1.6522 -8.1537 3.4886 18 6 -1.8734 -8.0736 5.6101 19 7 -1.6722 -7.3674 6.7013 20 14 -2.6854 -9.7522 5.7204 21 1 -1.7608 -10.7852 5.1884 22 1 -3.0030 -10.0562 7.1389 23 1 -3.9374 -9.7499 4.9218 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6580 2.1316 -0.0004 28 1 5.3565 0.0001 0.0125 29 1 4.1298 -2.1335 0.0033 30 1 -0.4299 -4.2168 0.6968 31 1 1.1674 -4.9775 0.8917 32 1 1.0802 -4.5341 3.3302 33 1 -0.5170 -3.7733 3.1345 34 1 -1.4227 -5.9051 2.2480 35 1 0.1749 -6.6651 2.4439 36 1 0.0879 -6.2218 4.8816 37 1 -1.5097 -5.4616 4.6865 38 1 -1.9445 -7.7188 7.5634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805903158.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:19 Heat of formation + Delta-G solvation = -141.768456 kcal Electronic energy + Delta-G solvation = -20600.921209 eV Core-core repulsion = 17128.664880 eV Total energy + Delta-G solvation = -3472.256329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.02877 -42.49285 -39.91473 -37.93635 -36.65073 -34.66359 -33.92911 -31.91181 -30.92716 -28.38142 -27.59285 -25.14399 -23.82572 -23.06706 -21.94910 -21.50032 -19.26694 -18.43091 -18.38403 -18.31060 -18.00479 -16.95966 -16.71079 -16.50166 -15.86855 -15.70182 -15.12609 -14.81268 -14.61067 -14.49560 -14.38007 -13.97431 -13.88598 -13.58622 -13.39319 -13.04746 -12.85922 -12.79647 -12.73389 -12.39151 -12.20185 -12.18594 -11.79672 -11.75583 -11.37527 -11.30456 -11.08284 -10.52918 -10.11241 -9.66763 -8.17785 -6.29430 -0.27401 0.02759 1.04162 1.41827 1.45241 1.52985 1.60497 2.42239 2.44548 3.07037 3.15382 3.51502 3.55724 3.68756 3.92836 3.99761 4.08186 4.15419 4.39399 4.45970 4.60397 4.63068 4.64144 4.71684 4.77873 4.87149 4.93804 4.97128 5.07397 5.14670 5.20842 5.26027 5.33169 5.39111 5.57580 5.72353 5.79336 5.89770 6.26571 6.73477 6.89332 7.40247 8.94161 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044519 B = 0.002479 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.793820 B =11293.795336 C =11339.748878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.067 4.067 3 C -0.146 4.146 4 C 0.095 3.905 5 F -0.139 7.139 6 C -0.145 4.145 7 C -0.093 4.093 8 C 0.046 3.954 9 O -0.287 6.287 10 C 0.462 3.538 11 O -0.523 6.523 12 C -0.099 4.099 13 C -0.101 4.101 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.064 0.936 36 H -0.014 1.014 37 H -0.014 1.014 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.981 15.235 -19.203 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.067 4.067 3 C -0.165 4.165 4 C 0.076 3.924 5 F -0.117 7.117 6 C -0.164 4.164 7 C -0.111 4.111 8 C 0.004 3.996 9 O -0.203 6.203 10 C 0.308 3.692 11 O -0.410 6.410 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.133 4.133 15 C -0.019 4.019 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.189 1.189 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.180 0.820 28 H 0.184 0.816 29 H 0.175 0.825 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.029 15.498 -18.718 25.925 hybrid contribution -0.142 -0.304 0.823 0.888 sum 8.887 15.194 -17.896 25.102 Atomic orbital electron populations 1.20869 0.88817 1.04961 1.03033 1.20177 0.98138 0.91356 0.97039 1.21141 0.92330 0.99439 1.03572 1.17894 0.90433 0.81602 1.02469 1.91510 1.80325 1.46074 1.93833 1.21251 1.02354 0.89846 1.02911 1.21336 0.92161 0.99935 0.97685 1.18716 0.91054 0.84260 1.05548 1.84653 1.66743 1.35205 1.33658 1.24894 0.75031 0.89077 0.80226 1.90703 1.52493 1.60281 1.37516 1.21555 1.03658 0.89042 0.99356 1.21371 1.00543 0.97594 0.94353 1.21437 0.99959 0.94891 0.97055 1.19053 0.94495 0.95033 0.93286 1.21741 1.39055 1.03786 0.93382 0.91516 1.26065 0.96737 1.01986 0.95544 1.70119 1.48977 1.39922 0.98827 0.85469 0.79216 0.79160 0.77018 1.18957 1.21227 1.18927 0.91282 0.88204 0.90570 0.82029 0.81561 0.82495 0.84757 0.84739 0.93115 0.93008 0.91677 0.91731 0.99564 0.99518 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 9.61 71.24 0.68 -1.41 16 2 C -0.07 -1.37 5.88 -19.77 -0.12 -1.49 16 3 C -0.15 -2.66 9.68 22.30 0.22 -2.45 16 4 C 0.10 1.79 7.30 22.38 0.16 1.96 16 5 F -0.14 -2.67 17.27 44.97 0.78 -1.89 16 6 C -0.15 -2.47 10.02 22.30 0.22 -2.25 16 7 C -0.09 -1.78 9.98 22.36 0.22 -1.55 16 8 C 0.05 1.03 4.90 22.50 0.11 1.14 16 9 O -0.29 -6.57 9.11 4.27 0.04 -6.53 16 10 C 0.46 12.01 7.69 71.23 0.55 12.56 16 11 O -0.52 -17.60 15.72 21.96 0.35 -17.25 16 12 C -0.10 -2.22 5.81 29.85 0.17 -2.05 16 13 C -0.10 -3.28 4.50 30.59 0.14 -3.14 16 14 C -0.10 -3.65 5.15 30.59 0.16 -3.49 16 15 C 0.02 0.97 4.97 29.85 0.15 1.12 16 16 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 18 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 19 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 20 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.08 1.30 7.53 -2.39 -0.02 1.28 16 27 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 28 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 29 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -71.00 335.35 7.88 -63.12 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.05 Total: 5.64 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.37 Total: -31.32 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.86 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.38 Total: -23.79 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.00 7.88 -63.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805903158.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.649 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds