Wall clock time and date at job start Tue Mar 31 2020 01:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33321 * 126.10415 * 2 1 4 4 C 1.30858 * 109.68495 * 180.27714 * 3 2 1 5 5 N 1.34500 * 109.16207 * 359.76888 * 4 3 2 6 6 H 0.97000 * 126.47580 * 180.02562 * 5 4 3 7 7 C 1.36663 * 126.10878 * 179.89110 * 2 1 3 8 8 C 1.46760 * 126.84439 * 359.97438 * 7 2 1 9 9 O 1.21685 * 120.00317 * 359.71330 * 8 7 2 10 10 N 1.34781 * 120.00075 * 179.71506 * 8 7 2 11 11 C 1.46498 * 119.99794 * 180.02562 * 10 8 7 12 12 H 1.08998 * 110.64408 * 31.86073 * 11 10 8 13 13 C 1.54342 * 110.85087 * 268.68888 * 11 10 8 14 14 N 1.47021 * 107.26639 * 219.67623 * 13 11 10 15 15 C 1.36933 * 125.64731 * 178.85155 * 14 13 11 16 16 H 1.08003 * 120.00051 * 342.93892 * 15 14 13 17 17 C 1.38814 * 120.00025 * 162.94053 * 15 14 13 18 18 N 1.31614 * 119.99636 * 332.07453 * 17 15 14 19 19 Si 1.86795 * 119.99941 * 151.80164 * 17 15 14 20 20 H 1.48496 * 109.47350 * 270.27579 * 19 17 15 21 21 H 1.48504 * 109.47175 * 30.27385 * 19 17 15 22 22 H 1.48508 * 109.47168 * 150.27107 * 19 17 15 23 23 C 1.47426 * 108.70444 * 358.58894 * 14 13 11 24 24 C 1.54910 * 104.83045 * 24.35239 * 23 14 13 25 25 H 1.08998 * 111.00110 * 81.07015 * 24 23 14 26 26 O 1.42902 * 111.00403 * 204.87732 * 24 23 14 27 27 H 1.08994 * 109.47328 * 270.11181 * 1 2 3 28 28 H 1.08999 * 109.47472 * 30.11593 * 1 2 3 29 29 H 1.09005 * 109.46793 * 150.11385 * 1 2 3 30 30 H 1.07996 * 125.42022 * 179.78408 * 4 3 2 31 31 H 0.96996 * 119.99542 * 0.02562 * 10 8 7 32 32 H 1.08997 * 109.98438 * 100.20152 * 13 11 10 33 33 H 1.08997 * 109.77646 * 339.03396 * 13 11 10 34 34 H 0.97001 * 120.00327 * 353.69068 * 18 17 15 35 35 H 1.08994 * 110.37101 * 143.19220 * 23 14 13 36 36 H 1.08999 * 110.36398 * 265.40844 * 23 14 13 37 37 H 0.96703 * 114.00079 * 298.54963 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7073 -0.0060 5 7 3.6122 -0.6362 -0.0049 6 1 4.4189 -1.1748 -0.0081 7 6 2.3124 -1.1041 0.0021 8 6 1.8821 -2.5072 0.0053 9 8 0.6963 -2.7800 0.0116 10 7 2.8005 -3.4937 0.0013 11 6 2.3710 -4.8943 0.0039 12 1 1.4275 -5.0079 -0.5299 13 6 2.2484 -5.4286 1.4467 14 7 2.7640 -6.8054 1.4474 15 6 2.8505 -7.6246 2.5413 16 1 2.7917 -7.2063 3.5353 17 6 3.0137 -8.9928 2.3727 18 7 2.5559 -9.5813 1.2881 19 14 3.8898 -9.9971 3.6814 20 1 5.3449 -10.0324 3.3869 21 1 3.6692 -9.3762 5.0122 22 1 3.3519 -11.3814 3.6858 23 6 3.1666 -7.1603 0.0743 24 6 3.4646 -5.8050 -0.6142 25 1 4.4618 -5.4474 -0.3577 26 8 3.3082 -5.9050 -2.0311 27 1 -0.3634 0.0020 1.0276 28 1 -0.3634 0.8889 -0.5156 29 1 -0.3633 -0.8911 -0.5121 30 1 4.3969 1.3746 -0.0107 31 1 3.7458 -3.2762 -0.0033 32 1 1.2039 -5.4237 1.7582 33 1 2.8413 -4.8103 2.1206 34 1 2.0254 -9.0784 0.6505 35 1 4.0613 -7.7825 0.0901 36 1 2.3548 -7.6772 -0.4374 37 1 3.9073 -6.5385 -2.4493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078289064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:32 Heat of formation + Delta-G solvation = -1.268578 kcal Electronic energy + Delta-G solvation = -21927.877049 eV Core-core repulsion = 18513.925964 eV Total energy + Delta-G solvation = -3413.951084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40843 -39.63074 -38.00437 -35.39272 -34.55573 -33.32180 -31.95344 -31.17176 -28.55936 -27.74089 -26.83734 -24.42359 -23.16306 -21.61546 -20.89872 -20.26396 -19.85217 -18.93282 -17.67599 -17.16291 -16.27123 -15.94362 -15.77137 -14.88028 -14.50002 -14.44797 -14.05419 -13.93027 -13.63914 -13.29831 -13.06052 -12.84892 -12.68758 -12.30370 -12.19310 -11.76771 -11.62336 -10.82734 -10.64066 -10.60189 -10.24955 -10.22718 -10.11411 -10.08491 -9.82247 -9.55415 -9.09406 -8.64923 -8.50735 -7.09894 -6.20105 -3.27797 1.13947 2.64187 2.66173 3.05964 3.25448 3.45443 3.46644 3.64214 4.20702 4.23859 4.52508 4.62713 4.84837 4.97123 5.06031 5.19776 5.30180 5.43120 5.48206 5.49948 5.74482 5.80574 5.84313 5.86050 5.98630 6.22264 6.44275 6.49617 6.60582 6.70076 6.79399 6.94455 7.38488 7.64180 7.70934 7.80384 8.13123 8.36466 8.88484 9.68398 10.19277 11.11518 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028303 B = 0.003892 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.056921 B = 7192.552305 C = 7387.396438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.096 3.904 3 N -0.500 5.500 4 C 0.217 3.783 5 N -0.555 5.555 6 H 0.422 0.578 7 C -0.088 4.088 8 C 0.595 3.405 9 O -0.518 6.518 10 N -0.714 5.714 11 C 0.144 3.856 12 H 0.107 0.893 13 C 0.129 3.871 14 N -0.597 5.597 15 C -0.341 4.341 16 H 0.069 0.931 17 C -0.023 4.023 18 N -0.914 5.914 19 Si 1.069 2.931 20 H -0.293 1.293 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.119 3.881 24 C 0.077 3.923 25 H 0.065 0.935 26 O -0.562 6.562 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.215 0.785 31 H 0.391 0.609 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.269 0.731 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 16.630 -4.992 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.038 4.038 3 N -0.221 5.221 4 C -0.067 4.067 5 N -0.161 5.161 6 H 0.261 0.739 7 C -0.204 4.204 8 C 0.381 3.619 9 O -0.394 6.394 10 N -0.364 5.364 11 C 0.039 3.961 12 H 0.125 0.875 13 C 0.002 3.998 14 N -0.326 5.326 15 C -0.468 4.468 16 H 0.087 0.913 17 C -0.225 4.225 18 N -0.555 5.555 19 Si 0.899 3.101 20 H -0.220 1.220 21 H -0.218 1.218 22 H -0.215 1.215 23 C -0.007 4.007 24 C 0.017 3.983 25 H 0.083 0.917 26 O -0.367 6.367 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.224 0.776 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.680 16.085 -4.402 17.321 hybrid contribution 1.284 0.214 -0.374 1.354 sum 5.964 16.299 -4.777 18.001 Atomic orbital electron populations 1.20308 0.86425 1.03684 1.03175 1.21088 0.96976 0.86561 0.99210 1.70140 1.00468 1.30490 1.20976 1.25125 0.97441 0.82040 1.02097 1.43340 1.08049 1.08832 1.55852 0.73913 1.21010 0.84294 0.95172 1.19911 1.16808 0.86031 0.82460 0.76627 1.90838 1.15936 1.82712 1.49895 1.45821 1.08823 1.06373 1.75352 1.22036 0.98772 0.77870 0.97396 0.87483 1.21690 0.97949 0.87852 0.92307 1.44387 1.72646 1.10851 1.04731 1.19810 1.51784 0.89872 0.85342 0.91327 1.25818 1.00534 0.93593 1.02598 1.70761 1.33120 1.38048 1.13556 0.83451 0.76356 0.75818 0.74490 1.22043 1.21776 1.21494 1.22170 0.99285 0.92738 0.86524 1.23359 0.96826 0.97573 0.80588 0.91746 1.86461 1.64766 1.65807 1.19675 0.90653 0.91119 0.89154 0.76841 0.77560 0.94460 0.95043 0.91903 0.92382 0.94188 0.77365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.88 36.01 0.36 -0.62 16 2 C 0.10 1.29 7.15 -82.52 -0.59 0.70 16 3 N -0.50 -6.21 11.20 -10.64 -0.12 -6.32 16 4 C 0.22 1.85 13.01 -90.57 -1.18 0.67 16 5 N -0.56 -4.80 6.07 -10.79 -0.07 -4.86 16 6 H 0.42 2.21 8.32 -40.82 -0.34 1.87 16 7 C -0.09 -1.14 7.08 -82.14 -0.58 -1.72 16 8 C 0.59 9.18 7.79 -12.81 -0.10 9.08 16 9 O -0.52 -9.71 14.46 5.20 0.08 -9.63 16 10 N -0.71 -10.17 5.10 -53.30 -0.27 -10.44 16 11 C 0.14 2.57 3.05 -66.09 -0.20 2.37 16 12 H 0.11 2.15 7.55 -51.93 -0.39 1.76 16 13 C 0.13 2.73 7.01 -3.06 -0.02 2.71 16 14 N -0.60 -14.81 3.29 -170.07 -0.56 -15.37 16 15 C -0.34 -9.45 10.02 -15.06 -0.15 -9.61 16 16 H 0.07 1.91 7.97 -52.48 -0.42 1.49 16 17 C -0.02 -0.65 5.09 -17.43 -0.09 -0.74 16 18 N -0.91 -27.03 12.92 55.49 0.72 -26.32 16 19 Si 1.07 24.77 30.00 -169.99 -5.10 19.67 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 C 0.12 2.63 5.03 -2.53 -0.01 2.62 16 24 C 0.08 1.31 4.06 -24.58 -0.10 1.21 16 25 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 26 O -0.56 -8.74 13.47 -35.23 -0.47 -9.22 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.23 6.49 -51.93 -0.34 0.89 16 30 H 0.22 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.39 4.27 7.80 -40.82 -0.32 3.95 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 34 H 0.27 8.03 6.06 -40.82 -0.25 7.78 16 35 H 0.06 1.35 7.94 -51.93 -0.41 0.94 16 36 H 0.04 0.97 6.80 -51.93 -0.35 0.62 16 37 H 0.38 4.32 9.11 45.56 0.42 4.74 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -35.75 313.56 -7.46 -43.22 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.72 Total: 7.87 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -2.67 Total: 6.68 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.30 Total: -63.31 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.40 Total: -18.85 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.10 Total: 19.67 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.75 -7.46 -43.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078289064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.948 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds