Wall clock time and date at job start Tue Mar 31 2020 01:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46554 * 2 1 4 4 C 1.53003 * 109.47200 * 240.00454 * 2 1 3 5 5 C 1.50708 * 109.47186 * 64.99659 * 4 2 1 6 6 C 1.38214 * 120.00753 * 100.00133 * 5 4 2 7 7 C 1.38224 * 120.02197 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.05408 * 359.97438 * 7 6 5 9 9 C 1.38183 * 120.02323 * 359.97438 * 8 7 6 10 10 C 1.38437 * 120.01160 * 280.27658 * 5 4 2 11 11 F 1.35099 * 120.02745 * 0.02562 * 10 5 4 12 12 C 1.50698 * 109.47034 * 120.00238 * 2 1 3 13 13 O 1.20826 * 119.99926 * 120.00314 * 12 2 1 14 14 O 1.34221 * 119.99973 * 299.99756 * 12 2 1 15 15 C 1.45204 * 116.99940 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47427 * 180.02562 * 15 14 12 17 17 C 1.50694 * 109.47585 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00291 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99753 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99953 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46976 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47070 * 119.99444 * 21 19 17 24 24 H 1.48498 * 109.46560 * 239.99593 * 21 19 17 25 25 H 1.09002 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47141 * 299.99912 * 1 2 3 27 27 H 1.09001 * 109.47119 * 60.00108 * 1 2 3 28 28 H 1.09004 * 109.46927 * 305.00018 * 4 2 1 29 29 H 1.08998 * 109.47211 * 185.00139 * 4 2 1 30 30 H 1.08000 * 119.99561 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.97833 * 180.02562 * 7 6 5 32 32 H 1.07999 * 119.98941 * 180.02562 * 8 7 6 33 33 H 1.08002 * 120.01017 * 180.02562 * 9 8 7 34 34 H 1.08997 * 109.47592 * 300.00660 * 15 14 12 35 35 H 1.09002 * 109.46431 * 60.00745 * 15 14 12 36 36 H 1.09004 * 109.47533 * 300.00900 * 16 15 14 37 37 H 1.09003 * 109.47093 * 60.00099 * 16 15 14 38 38 H 0.97005 * 119.99829 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4767 6 6 2.5585 0.8818 -3.1004 7 6 2.1929 1.5963 -4.2258 8 6 0.9098 1.4866 -4.7292 9 6 -0.0085 0.6619 -4.1078 10 6 0.3546 -0.0491 -2.9763 11 9 -0.5444 -0.8502 -2.3638 12 6 2.0323 -0.7105 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9865 3.5896 16 6 1.7549 -0.3201 4.8834 17 6 2.2937 -1.0820 6.0665 18 1 2.9107 -1.9548 5.9112 19 6 1.9981 -0.6658 7.3473 20 7 1.2464 0.3966 7.5364 21 14 2.6667 -1.6100 8.8140 22 1 3.4791 -2.7572 8.3355 23 1 3.5152 -0.7109 9.6365 24 1 1.5365 -2.1128 9.6357 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7197 -1.2953 29 1 3.1264 -0.7994 -1.2057 30 1 3.5609 0.9687 -2.7080 31 1 2.9103 2.2401 -4.7130 32 1 0.6255 2.0450 -5.6088 33 1 -1.0105 0.5761 -4.5014 34 1 1.8627 -2.0133 3.5564 35 1 3.3163 -0.9861 3.5567 36 1 2.1186 0.7070 4.9168 37 1 0.6653 -0.3207 4.9159 38 1 1.0388 0.6897 8.4375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172425303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:27 Heat of formation + Delta-G solvation = -128.176973 kcal Electronic energy + Delta-G solvation = -21040.229230 eV Core-core repulsion = 17568.562272 eV Total energy + Delta-G solvation = -3471.666958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.18552 -40.21281 -39.29568 -36.38065 -35.09475 -33.33844 -31.49467 -30.71871 -30.12220 -26.91153 -25.42561 -24.00050 -22.96457 -21.80246 -20.84884 -19.76939 -17.92117 -17.35478 -16.67757 -16.55422 -16.17426 -15.88937 -15.82637 -15.56385 -14.54029 -14.43277 -14.30303 -13.58331 -13.45887 -13.18692 -12.90239 -12.79143 -12.50673 -12.35402 -11.95127 -11.89188 -11.32464 -11.23893 -11.17377 -11.10738 -10.98149 -10.75562 -10.65867 -10.10393 -9.63074 -9.60277 -9.29464 -9.24447 -8.91347 -8.44527 -6.10292 -4.14496 0.83837 0.89007 2.59067 3.10916 3.27642 3.32858 3.35795 3.41183 3.99516 4.36054 4.41833 4.46070 4.64464 4.71094 4.82452 4.95994 5.03502 5.09998 5.26375 5.39118 5.49606 5.54020 5.71294 5.76670 5.78984 5.86599 6.00530 6.05163 6.10292 6.11026 6.13063 6.24244 6.58883 6.65014 7.02204 7.56867 7.63073 7.87283 8.19979 8.28159 8.91352 9.49931 11.01305 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042951 B = 0.002807 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.744615 B = 9972.113295 C =10089.020292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.107 0.893 4 C -0.067 4.067 5 C -0.111 4.111 6 C -0.087 4.087 7 C -0.129 4.129 8 C -0.097 4.097 9 C -0.154 4.154 10 C 0.104 3.896 11 F -0.132 7.132 12 C 0.460 3.540 13 O -0.519 6.519 14 O -0.354 6.354 15 C 0.075 3.925 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 3.345 -25.331 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.125 0.875 4 C -0.104 4.104 5 C -0.112 4.112 6 C -0.105 4.105 7 C -0.147 4.147 8 C -0.115 4.115 9 C -0.173 4.173 10 C 0.084 3.916 11 F -0.111 7.111 12 C 0.303 3.697 13 O -0.409 6.409 14 O -0.270 6.270 15 C 0.002 3.998 16 C -0.013 4.013 17 C -0.564 4.564 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.963 3.121 -25.135 25.346 hybrid contribution 0.232 -0.672 1.005 1.231 sum -0.730 2.449 -24.130 24.265 Atomic orbital electron populations 1.22041 0.91862 1.03328 1.03430 1.20972 0.98610 1.00762 0.89447 0.87452 1.20442 1.02733 0.98423 0.88805 1.19936 0.92622 1.00124 0.98517 1.21040 0.99415 0.94921 0.95129 1.21222 0.96657 1.00111 0.96740 1.21018 0.93125 0.97667 0.99656 1.21172 1.01400 0.98941 0.95800 1.17554 0.87085 0.93422 0.93509 1.91521 1.66489 1.71236 1.81829 1.23447 0.77524 0.82885 0.85821 1.90619 1.36234 1.26240 1.87783 1.86521 1.69326 1.56164 1.15031 1.23639 0.98050 0.95277 0.82832 1.19169 0.97848 0.96807 0.87458 1.21023 1.32332 1.12688 0.90331 0.92224 1.24987 0.94994 0.95116 0.99094 1.69984 1.36959 1.24053 1.21860 0.86418 0.78799 0.79880 0.82244 1.19592 1.20820 1.20821 0.91712 0.90886 0.91197 0.89610 0.89285 0.84830 0.85306 0.85141 0.84762 0.92360 0.92363 0.95374 0.95351 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 7.62 37.16 0.28 -1.59 16 2 C -0.08 -1.03 2.82 -91.77 -0.26 -1.29 16 3 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.07 -0.78 4.06 -27.88 -0.11 -0.89 16 5 C -0.11 -1.11 4.99 -104.55 -0.52 -1.64 16 6 C -0.09 -0.72 9.67 -39.60 -0.38 -1.10 16 7 C -0.13 -0.89 10.04 -39.58 -0.40 -1.29 16 8 C -0.10 -0.65 10.04 -39.59 -0.40 -1.05 16 9 C -0.15 -1.25 10.03 -39.51 -0.40 -1.65 16 10 C 0.10 1.05 5.86 -39.42 -0.23 0.82 16 11 F -0.13 -1.51 13.68 2.25 0.03 -1.48 16 12 C 0.46 8.18 7.25 36.00 0.26 8.44 16 13 O -0.52 -10.36 15.67 -18.75 -0.29 -10.65 16 14 O -0.35 -7.24 10.12 -39.23 -0.40 -7.63 16 15 C 0.07 1.70 5.40 37.16 0.20 1.90 16 16 C 0.02 0.64 5.35 -27.89 -0.15 0.50 16 17 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 18 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.06 0.84 7.74 -51.93 -0.40 0.44 16 26 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 27 H 0.07 0.78 5.16 -51.93 -0.27 0.51 16 28 H 0.09 1.08 7.96 -51.93 -0.41 0.67 16 29 H 0.09 1.01 7.82 -51.93 -0.41 0.61 16 30 H 0.13 0.90 8.04 -52.49 -0.42 0.47 16 31 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -31.81 327.07 -7.78 -39.60 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -5.26 Total: -2.98 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.51 Total: -12.49 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.69 Total: -18.29 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.03 Total: -1.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.81 -7.78 -39.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172425303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.581 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds