Wall clock time and date at job start Tue Mar 31 2020 02:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36337 * 126.20141 * 2 1 4 4 C 1.36253 * 106.89074 * 180.23664 * 3 2 1 5 5 C 1.47241 * 126.16784 * 179.70172 * 4 3 2 6 6 O 1.21639 * 120.00250 * 7.24409 * 5 4 3 7 7 N 1.34774 * 120.00223 * 187.24312 * 5 4 3 8 8 C 1.46962 * 120.59505 * 7.01749 * 7 5 4 9 9 C 1.53809 * 108.40258 * 124.75972 * 8 7 5 10 10 N 1.46961 * 108.57975 * 49.63332 * 9 8 7 11 11 C 1.36941 * 120.59217 * 124.67039 * 10 9 8 12 12 H 1.07996 * 120.00273 * 221.57198 * 11 10 9 13 13 C 1.38816 * 119.99610 * 41.57218 * 11 10 9 14 14 N 1.31613 * 120.00291 * 6.99394 * 13 11 10 15 15 Si 1.86804 * 119.99654 * 186.98823 * 13 11 10 16 16 H 1.48504 * 109.46868 * 90.00490 * 15 13 11 17 17 H 1.48501 * 109.47064 * 209.99997 * 15 13 11 18 18 H 1.48502 * 109.47251 * 330.00226 * 15 13 11 19 19 C 1.46963 * 118.81667 * 304.65200 * 10 9 8 20 20 C 1.46970 * 120.59386 * 187.29451 * 7 5 4 21 21 N 1.36030 * 107.66698 * 359.58288 * 4 3 2 22 22 C 1.30706 * 108.94576 * 0.42843 * 21 4 3 23 23 O 1.35460 * 125.55449 * 179.75972 * 22 21 4 24 24 H 1.09007 * 109.46801 * 90.00079 * 1 2 3 25 25 H 1.08997 * 109.46945 * 210.00003 * 1 2 3 26 26 H 1.09000 * 109.46731 * 330.00226 * 1 2 3 27 27 H 1.07997 * 126.55769 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.60870 * 244.54269 * 8 7 5 29 29 H 1.09005 * 109.60592 * 5.05015 * 8 7 5 30 30 H 1.09006 * 109.73660 * 289.84627 * 9 8 7 31 31 H 1.09002 * 109.53510 * 169.30721 * 9 8 7 32 32 H 0.97000 * 120.00441 * 179.97438 * 14 13 11 33 33 H 1.09005 * 109.60894 * 295.47892 * 19 10 9 34 34 H 1.09000 * 109.61209 * 174.97201 * 19 10 9 35 35 H 1.08992 * 109.61346 * 354.94880 * 20 7 5 36 36 H 1.09000 * 109.60793 * 115.45860 * 20 7 5 37 37 H 0.96695 * 113.99681 * 269.97384 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2703 1.1002 0.0000 4 6 3.5561 0.6496 -0.0054 5 6 4.7692 1.4840 -0.0136 6 8 4.6788 2.6900 0.1167 7 7 5.9799 0.9116 -0.1654 8 6 6.0967 -0.5199 -0.4766 9 6 6.9369 -0.6717 -1.7560 10 7 8.1640 0.1232 -1.6074 11 6 9.3941 -0.4584 -1.7616 12 1 10.1993 -0.2057 -1.0877 13 6 9.6061 -1.3728 -2.7843 14 7 8.6712 -1.5784 -3.6875 15 14 11.2185 -2.3114 -2.8785 16 1 11.1010 -3.5757 -2.1084 17 1 11.5277 -2.6229 -4.2972 18 1 12.3085 -1.4818 -2.3049 19 6 8.0474 1.5536 -1.2907 20 6 7.2071 1.7066 -0.0168 21 7 3.5171 -0.7101 0.0009 22 6 2.2692 -1.0989 0.0005 23 8 1.8450 -2.3854 0.0011 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9502 2.1316 -0.0004 28 1 6.5870 -1.0350 0.3494 29 1 5.1043 -0.9416 -0.6366 30 1 6.3693 -0.3115 -2.6141 31 1 7.1957 -1.7208 -1.8998 32 1 8.8195 -2.2171 -4.4024 33 1 7.5589 2.0723 -2.1157 34 1 9.0396 1.9742 -1.1272 35 1 6.9483 2.7555 0.1269 36 1 7.7746 1.3463 0.8412 37 1 1.7219 -2.7593 -0.8821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708408721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:00 Heat of formation + Delta-G solvation = 37.937797 kcal Electronic energy + Delta-G solvation = -22286.914814 eV Core-core repulsion = 18874.663846 eV Total energy + Delta-G solvation = -3412.250968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.26880 -39.15232 -37.42559 -36.51057 -34.46587 -33.54732 -31.18587 -30.04651 -29.17885 -27.62664 -26.58244 -23.97507 -22.82638 -22.29175 -21.48599 -20.27827 -19.06814 -18.18738 -17.28515 -16.64149 -15.99877 -15.60039 -15.36756 -14.67587 -14.65842 -14.49843 -14.29042 -13.51101 -13.30714 -13.27538 -13.18059 -12.94308 -12.83173 -12.12767 -12.07152 -11.52768 -11.28558 -10.81353 -10.61376 -10.39326 -10.30685 -10.10764 -9.96361 -9.76155 -9.72563 -9.02248 -8.60135 -8.44058 -8.00247 -6.38692 -5.75459 -3.35709 1.51841 2.06522 2.31400 3.38660 3.41993 3.45337 3.47231 3.79382 3.83265 4.38904 4.50255 4.56445 4.73114 5.01387 5.06144 5.36225 5.43009 5.56604 5.74172 5.99086 6.05141 6.16326 6.27220 6.34944 6.38940 6.55153 6.67125 6.83223 6.96553 7.15321 7.38983 7.48132 7.58123 7.65469 7.84202 8.13147 8.57065 8.70262 9.26034 9.82955 10.49775 11.30447 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024358 B = 0.004699 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.226891 B = 5957.338622 C = 6835.203300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.466 5.466 3 C 0.035 3.965 4 C -0.030 4.030 5 C 0.593 3.407 6 O -0.564 6.564 7 N -0.577 5.577 8 C 0.056 3.944 9 C 0.166 3.834 10 N -0.591 5.591 11 C -0.262 4.262 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.899 5.899 15 Si 0.903 3.097 16 H -0.286 1.286 17 H -0.290 1.290 18 H -0.277 1.277 19 C 0.133 3.867 20 C 0.094 3.906 21 N -0.442 5.442 22 C 0.373 3.627 23 O -0.441 6.441 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.194 0.806 28 H 0.055 0.945 29 H 0.127 0.873 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.255 0.745 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.971 1.312 6.047 19.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.162 5.162 3 C -0.101 4.101 4 C -0.159 4.159 5 C 0.380 3.620 6 O -0.444 6.444 7 N -0.307 5.307 8 C -0.068 4.068 9 C 0.039 3.961 10 N -0.314 5.314 11 C -0.392 4.392 12 H 0.078 0.922 13 C -0.184 4.184 14 N -0.541 5.541 15 Si 0.732 3.268 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.202 1.202 19 C 0.006 3.994 20 C -0.030 4.030 21 N -0.172 5.172 22 C 0.073 3.927 23 O -0.241 6.241 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.211 0.789 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -17.435 1.213 6.558 18.667 hybrid contribution 0.003 -0.411 -0.715 0.824 sum -17.431 0.801 5.844 18.402 Atomic orbital electron populations 1.22110 0.76103 1.05207 1.03897 1.45843 1.08163 1.06623 1.55525 1.22573 0.89666 0.92298 1.05582 1.20542 0.93672 0.89301 1.12387 1.16902 0.81968 0.85976 0.77150 1.90733 1.86411 1.13614 1.53665 1.47861 1.04683 1.11652 1.66484 1.23581 1.04616 0.78746 0.99848 1.21152 0.86051 0.97677 0.91177 1.43875 1.02461 1.02279 1.82800 1.19092 0.89096 1.22356 1.08705 0.92221 1.25447 0.97279 1.00875 0.94826 1.69968 1.33508 1.36198 1.14410 0.86304 0.83662 0.79976 0.76832 1.21247 1.21649 1.20248 1.21309 0.97274 0.87767 0.93012 1.22267 0.85022 0.95600 1.00125 1.70911 1.15289 1.11109 1.19911 1.20667 0.84350 0.81409 1.06249 1.84875 1.86766 1.18217 1.34292 0.90194 0.89040 0.89149 0.78893 0.92685 0.85581 0.96125 0.89944 0.93551 0.95958 0.91625 0.90073 0.91969 0.74042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 11.11 59.85 0.66 1.01 16 2 N -0.47 -4.80 3.16 -125.77 -0.40 -5.20 16 3 C 0.04 0.44 11.30 -16.26 -0.18 0.26 16 4 C -0.03 -0.51 6.66 -83.06 -0.55 -1.06 16 5 C 0.59 11.70 7.67 -12.60 -0.10 11.60 16 6 O -0.56 -11.86 16.31 5.24 0.09 -11.78 16 7 N -0.58 -11.94 2.94 -173.55 -0.51 -12.45 16 8 C 0.06 1.18 6.32 -3.37 -0.02 1.16 16 9 C 0.17 4.11 5.43 -3.37 -0.02 4.10 16 10 N -0.59 -15.43 2.90 -171.77 -0.50 -15.93 16 11 C -0.26 -7.33 9.45 -15.06 -0.14 -7.47 16 12 H 0.06 1.64 7.84 -52.49 -0.41 1.23 16 13 C 0.02 0.45 5.09 -17.43 -0.09 0.36 16 14 N -0.90 -26.35 11.62 55.49 0.64 -25.70 16 15 Si 0.90 21.73 29.56 -169.99 -5.02 16.71 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.13 3.02 6.67 -3.60 -0.02 3.00 16 20 C 0.09 1.89 6.60 -3.59 -0.02 1.87 16 21 N -0.44 -7.23 7.78 -11.22 -0.09 -7.32 16 22 C 0.37 4.76 9.03 -89.16 -0.81 3.95 16 23 O -0.44 -4.36 13.55 -18.07 -0.24 -4.61 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.19 1.93 8.06 -52.49 -0.42 1.50 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.13 2.52 4.03 -64.10 -0.26 2.27 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 2.22 6.72 -51.93 -0.35 1.87 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 35 H 0.08 1.56 6.99 -51.93 -0.36 1.20 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.40 2.00 9.06 45.56 0.41 2.42 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -35.67 310.38 -6.54 -42.21 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -3.90 Total: 0.61 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: -1.29 Total: 18.77 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -0.85 Total: -66.60 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.16 Total: -16.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.67 -6.54 -42.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708408721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.152 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds