Wall clock time and date at job start Tue Mar 31 2020 02:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28717 * 126.04000 * 2 1 4 4 N 1.28511 * 110.65228 * 179.75397 * 3 2 1 5 5 C 1.33302 * 109.46075 * 0.46150 * 4 3 2 6 6 C 1.37077 * 106.36324 * 359.56048 * 5 4 3 7 7 C 1.47081 * 127.19670 * 180.24707 * 6 5 4 8 8 O 1.21538 * 120.00533 * 0.02562 * 7 6 5 9 9 O 1.34810 * 119.99769 * 180.02562 * 7 6 5 10 10 C 1.45197 * 116.99974 * 179.97438 * 9 7 6 11 11 C 1.53039 * 109.46215 * 270.06622 * 10 9 7 12 12 C 1.53194 * 109.31330 * 178.61090 * 11 10 9 13 13 N 1.46930 * 108.77535 * 54.63707 * 12 11 10 14 14 C 1.36938 * 120.62975 * 126.40712 * 13 12 11 15 15 H 1.07994 * 120.00024 * 332.61515 * 14 13 12 16 16 C 1.38812 * 119.99353 * 152.61184 * 14 13 12 17 17 N 1.31625 * 119.99528 * 159.34992 * 16 14 13 18 18 Si 1.86796 * 120.00491 * 339.34406 * 16 14 13 19 19 H 1.48495 * 109.47061 * 92.94307 * 18 16 14 20 20 H 1.48501 * 109.47417 * 212.94625 * 18 16 14 21 21 H 1.48507 * 109.46977 * 332.94717 * 18 16 14 22 22 C 1.46928 * 118.73644 * 306.39463 * 13 12 11 23 23 C 1.53039 * 109.46090 * 149.99568 * 10 9 7 24 24 H 1.09000 * 109.47422 * 269.95559 * 1 2 3 25 25 H 1.09001 * 109.47059 * 29.95727 * 1 2 3 26 26 H 1.09003 * 109.47141 * 149.95184 * 1 2 3 27 27 H 1.07989 * 126.81703 * 179.81771 * 5 4 3 28 28 H 1.09006 * 109.45781 * 30.02622 * 10 9 7 29 29 H 1.08991 * 109.49701 * 298.56871 * 11 10 9 30 30 H 1.09002 * 109.49365 * 58.66669 * 11 10 9 31 31 H 1.08999 * 109.58877 * 294.84734 * 12 11 10 32 32 H 1.09000 * 109.70057 * 174.49389 * 12 11 10 33 33 H 0.97000 * 119.99498 * 179.97438 * 17 16 14 34 34 H 1.09000 * 109.58322 * 293.81634 * 22 13 12 35 35 H 1.08997 * 109.69956 * 173.46350 * 22 13 12 36 36 H 1.08998 * 109.50168 * 301.33985 * 23 10 9 37 37 H 1.09004 * 109.49921 * 61.43673 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4613 0.6998 0.0052 5 6 3.5561 -0.6298 -0.0013 6 6 2.2716 -1.1085 -0.0009 7 6 1.8475 -2.5168 -0.0016 8 8 2.6800 -3.4023 -0.0021 9 8 0.5352 -2.8256 -0.0016 10 6 0.1898 -4.2359 -0.0029 11 6 0.0699 -4.7301 -1.4463 12 6 -0.2604 -6.2261 -1.4438 13 7 -1.4640 -6.4432 -0.6296 14 6 -2.5418 -7.1142 -1.1428 15 1 -2.7266 -7.1055 -2.2068 16 6 -3.3966 -7.8056 -0.2954 17 7 -4.6176 -8.1000 -0.6893 18 14 -2.8144 -8.3182 1.4038 19 1 -3.1851 -7.2723 2.3906 20 1 -3.4560 -9.6035 1.7802 21 1 -1.3389 -8.4865 1.3916 22 6 -1.4891 -5.9271 0.7458 23 6 -1.1450 -4.4346 0.7188 24 1 -0.3634 -0.0008 1.0276 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3633 -0.8896 -0.5146 27 1 4.4644 -1.2139 -0.0020 28 1 0.9679 -4.8007 0.5107 29 1 -0.7247 -4.1829 -1.9533 30 1 1.0138 -4.5669 -1.9663 31 1 0.5740 -6.7838 -1.0185 32 1 -0.4434 -6.5636 -2.4639 33 1 -5.2148 -8.5834 -0.0972 34 1 -0.7550 -6.4604 1.3497 35 1 -2.4827 -6.0653 1.1721 36 1 -1.0659 -4.0609 1.7396 37 1 -1.9283 -3.8901 0.1913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798841821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:44 Heat of formation + Delta-G solvation = 42.813326 kcal Electronic energy + Delta-G solvation = -22150.929287 eV Core-core repulsion = 18738.889737 eV Total energy + Delta-G solvation = -3412.039549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.64035 -40.54889 -37.92538 -36.33333 -35.04074 -32.86687 -31.83659 -30.75272 -30.50251 -28.42253 -25.90718 -24.41736 -23.09977 -22.75597 -22.05317 -20.98766 -19.79876 -18.46751 -17.37320 -17.23309 -17.01685 -16.43326 -15.83242 -15.29882 -14.68431 -14.33654 -14.13842 -13.99058 -13.69740 -13.37425 -13.27162 -13.09105 -12.63969 -12.38648 -12.17797 -12.00247 -11.57892 -11.53747 -11.01378 -11.00297 -10.87639 -10.61202 -10.55692 -10.26409 -10.04219 -9.92073 -9.85987 -9.54103 -8.76339 -7.14972 -6.05689 -3.43271 0.46018 1.77030 1.92383 2.31899 2.55937 3.21762 3.41088 3.42602 3.84300 4.27620 4.41937 4.50020 4.64653 4.71788 4.77355 4.92525 5.00351 5.09990 5.20558 5.25205 5.36040 5.59601 5.62935 5.78242 5.82378 5.96508 6.00339 6.07447 6.15347 6.35199 6.42183 6.45123 6.50008 6.75227 7.42181 7.82351 7.96143 8.21534 8.80365 9.59343 9.94646 11.09949 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.037054 B = 0.003972 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.465500 B = 7047.334190 C = 7197.714680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.258 5.258 3 N -0.051 5.051 4 N -0.277 5.277 5 C 0.037 3.963 6 C -0.058 4.058 7 C 0.543 3.457 8 O -0.483 6.483 9 O -0.355 6.355 10 C 0.100 3.900 11 C -0.149 4.149 12 C 0.152 3.848 13 N -0.605 5.605 14 C -0.265 4.265 15 H 0.088 0.912 16 C 0.026 3.974 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.287 1.287 20 H -0.301 1.301 21 H -0.270 1.270 22 C 0.128 3.872 23 C -0.129 4.129 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.206 0.794 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.264 0.736 34 H 0.030 0.970 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.335 14.198 2.370 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.058 5.058 3 N -0.033 5.033 4 N -0.139 5.139 5 C -0.123 4.123 6 C -0.189 4.189 7 C 0.383 3.617 8 O -0.368 6.368 9 O -0.272 6.272 10 C 0.046 3.954 11 C -0.188 4.188 12 C 0.025 3.975 13 N -0.329 5.329 14 C -0.393 4.393 15 H 0.105 0.895 16 C -0.174 4.174 17 N -0.547 5.547 18 Si 0.710 3.290 19 H -0.215 1.215 20 H -0.229 1.229 21 H -0.195 1.195 22 C 0.002 3.998 23 C -0.169 4.169 24 H 0.119 0.881 25 H 0.125 0.875 26 H 0.136 0.864 27 H 0.223 0.777 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.377 15.282 2.381 18.625 hybrid contribution 0.052 -1.571 1.019 1.874 sum 10.429 13.711 3.400 17.559 Atomic orbital electron populations 1.22661 0.70906 1.07132 1.06146 1.47909 1.10154 1.03732 1.43964 1.78258 0.96796 1.11620 1.16597 1.75010 1.09059 1.12133 1.17715 1.23913 0.96585 0.91330 1.00473 1.21361 0.91973 0.87449 1.18151 1.19343 0.82254 0.86380 0.73679 1.90917 1.53251 1.47463 1.45190 1.86588 1.24427 1.32856 1.83309 1.23038 0.98215 0.75467 0.98665 1.22495 1.01634 1.00252 0.94464 1.20888 0.88976 0.90939 0.96658 1.44433 1.14109 1.63947 1.10368 1.18921 1.00486 1.25267 0.94599 0.89459 1.25287 0.95928 0.98215 0.97957 1.69833 1.04990 1.42459 1.37439 0.87001 0.79291 0.77539 0.85176 1.21507 1.22887 1.19454 1.21384 1.00741 0.89853 0.87776 1.22279 0.94687 1.00489 0.99404 0.88148 0.87474 0.86416 0.77739 0.89713 0.90757 0.91999 0.95406 0.90947 0.92612 0.95254 0.89909 0.91770 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 10.91 59.85 0.65 1.14 16 2 N -0.26 -2.71 3.80 -64.14 -0.24 -2.96 16 3 N -0.05 -0.62 13.14 60.35 0.79 0.18 16 4 N -0.28 -3.50 12.35 30.48 0.38 -3.13 16 5 C 0.04 0.42 11.87 -17.33 -0.21 0.21 16 6 C -0.06 -0.68 6.98 -82.35 -0.57 -1.25 16 7 C 0.54 7.10 7.92 34.32 0.27 7.38 16 8 O -0.48 -7.38 16.18 -19.29 -0.31 -7.70 16 9 O -0.36 -4.58 7.51 -40.79 -0.31 -4.89 16 10 C 0.10 1.49 2.42 -26.69 -0.06 1.43 16 11 C -0.15 -2.32 5.72 -26.61 -0.15 -2.48 16 12 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 13 N -0.61 -13.51 2.77 -172.32 -0.48 -13.99 16 14 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16 15 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 16 C 0.03 0.71 5.23 -17.43 -0.09 0.62 16 17 N -0.90 -26.75 13.97 55.49 0.78 -25.98 16 18 Si 0.88 21.32 24.35 -169.99 -4.14 17.18 16 19 H -0.29 -6.63 6.62 56.52 0.37 -6.25 16 20 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.27 -6.43 6.64 56.52 0.38 -6.06 16 22 C 0.13 2.59 4.20 -3.71 -0.02 2.57 16 23 C -0.13 -2.05 5.74 -26.61 -0.15 -2.20 16 24 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.12 0.84 6.30 -51.93 -0.33 0.52 16 27 H 0.21 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.08 1.34 7.16 -51.93 -0.37 0.97 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 35 H 0.08 1.82 4.50 -51.93 -0.23 1.59 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 306.34 15.07 4.62 4.62 Total: -1.00 -31.47 306.34 -4.13 -35.60 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -4.71 Total: -1.94 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.51 Total: 3.00 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 1.22 Total: -45.88 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.62 Total: -12.58 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.18 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.47 -4.13 -35.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798841821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.413 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds