Wall clock time and date at job start Tue Mar 31 2020 02:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35777 * 116.99852 * 2 1 4 4 C 1.35593 * 126.08046 * 183.31367 * 3 2 1 5 5 C 1.41067 * 107.79279 * 179.84924 * 4 3 2 6 6 C 1.47723 * 125.97910 * 180.20142 * 5 4 3 7 7 O 1.21566 * 119.99983 * 0.28115 * 6 5 4 8 8 N 1.34774 * 119.99961 * 180.28660 * 6 5 4 9 9 C 1.46501 * 120.00213 * 180.02562 * 8 6 5 10 10 C 1.53939 * 113.74000 * 253.73984 * 9 8 6 11 11 N 1.47816 * 86.03442 * 222.08299 * 10 9 8 12 12 C 1.36939 * 134.45337 * 204.64447 * 11 10 9 13 13 H 1.08001 * 119.99378 * 179.86092 * 12 11 10 14 14 C 1.38811 * 120.00256 * 359.86902 * 12 11 10 15 15 N 1.31616 * 119.99837 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99922 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47060 * 59.99748 * 16 14 12 18 18 H 1.48497 * 109.46976 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47452 * 299.99828 * 16 14 12 20 20 C 1.47571 * 91.05182 * 24.54753 * 11 10 9 21 21 N 1.31860 * 108.03801 * 0.42179 * 5 4 3 22 22 N 1.35842 * 126.08631 * 3.62920 * 3 2 1 23 23 C 1.46501 * 125.94556 * 359.97438 * 22 3 2 24 24 H 1.08999 * 109.47001 * 306.96477 * 1 2 3 25 25 H 1.09006 * 109.47059 * 66.95998 * 1 2 3 26 26 H 1.08993 * 109.46752 * 186.96489 * 1 2 3 27 27 H 1.07995 * 126.10537 * 359.97438 * 4 3 2 28 28 H 0.97004 * 120.00039 * 359.97438 * 8 6 5 29 29 H 1.09001 * 112.93792 * 25.32717 * 9 8 6 30 30 H 1.09001 * 113.77137 * 336.34168 * 10 9 8 31 31 H 1.08994 * 113.77251 * 107.74522 * 10 9 8 32 32 H 0.96997 * 119.99806 * 180.02562 * 15 14 12 33 33 H 1.09001 * 113.77422 * 221.15563 * 20 11 10 34 34 H 1.09000 * 113.76885 * 89.75515 * 20 11 10 35 35 H 1.09001 * 109.47155 * 82.76137 * 23 22 3 36 36 H 1.08997 * 109.46862 * 202.76196 * 23 22 3 37 37 H 1.09005 * 109.47307 * 322.75849 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3827 1.4247 -0.0633 5 6 3.5968 2.8188 -0.0413 6 6 4.9083 3.4964 -0.0966 7 8 5.9287 2.8402 -0.1734 8 7 4.9735 4.8421 -0.0617 9 6 6.2741 5.5142 -0.1171 10 6 6.7216 6.1101 1.2299 11 7 7.1642 7.2832 0.4470 12 6 8.0962 8.2680 0.6388 13 1 8.2330 9.0350 -0.1092 14 6 8.8651 8.2804 1.7944 15 7 8.6981 7.3459 2.7060 16 14 10.1369 9.6234 2.0556 17 1 9.4651 10.9478 2.0574 18 1 10.8187 9.4130 3.3580 19 1 11.1376 9.5776 0.9595 20 6 6.2007 6.9656 -0.6247 21 7 2.4217 3.4111 0.0421 22 7 1.4324 2.4201 0.0695 23 6 -0.0120 2.6488 0.1572 24 1 -0.3633 0.6180 0.8211 25 1 -0.3633 0.4022 -0.9457 26 1 -0.3632 -1.0200 0.1246 27 1 4.1473 0.6643 -0.1224 28 1 4.1592 5.3658 -0.0007 29 1 7.0410 4.9155 -0.6086 30 1 5.8981 6.3224 1.9117 31 1 7.5371 5.5633 1.7031 32 1 9.2351 7.3548 3.5137 33 1 6.6010 7.1003 -1.6296 34 1 5.2238 7.4297 -0.4889 35 1 -0.3335 2.5481 1.1938 36 1 -0.2431 3.6526 -0.1991 37 1 -0.5339 1.9157 -0.4580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030652279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:54 Heat of formation + Delta-G solvation = 89.238630 kcal Electronic energy + Delta-G solvation = -21233.166269 eV Core-core repulsion = 17823.139872 eV Total energy + Delta-G solvation = -3410.026397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77390 -39.44136 -38.43784 -37.33262 -33.74573 -33.42333 -31.78827 -30.27051 -28.25600 -27.51336 -26.54064 -24.77516 -23.98752 -22.25778 -21.62911 -19.89505 -19.47311 -18.22664 -17.01167 -16.74762 -16.40429 -15.94131 -15.53197 -15.19934 -15.06401 -14.83005 -14.32394 -14.18523 -13.78458 -13.72601 -13.36128 -13.17381 -12.63344 -11.87690 -11.78045 -11.66946 -11.40340 -11.38307 -10.96119 -10.84336 -10.73608 -10.41528 -10.05630 -9.75945 -9.49007 -9.35281 -8.76623 -8.58425 -8.39457 -6.87882 -5.73025 -3.07068 1.30360 1.91429 2.11021 2.58496 3.42179 3.45525 3.48543 3.51519 3.60637 3.98730 4.33513 4.43142 4.50742 4.63115 4.71389 4.79620 5.02419 5.13127 5.16135 5.37460 5.52615 5.62301 5.72421 5.76615 6.05877 6.24905 6.29130 6.46402 6.60379 6.78454 7.03106 7.17472 7.28556 7.42492 7.60866 7.93353 8.00493 8.51800 9.06712 9.73077 10.59954 11.43667 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.046478 B = 0.003010 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.289480 B = 9299.448695 C = 9456.651701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.288 6.288 3 C 0.265 3.735 4 C -0.233 4.233 5 C 0.066 3.934 6 C 0.595 3.405 7 O -0.525 6.525 8 N -0.698 5.698 9 C 0.090 3.910 10 C 0.154 3.846 11 N -0.607 5.607 12 C -0.226 4.226 13 H 0.081 0.919 14 C -0.007 4.007 15 N -0.918 5.918 16 Si 0.915 3.085 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.113 3.887 21 N -0.250 5.250 22 N -0.396 5.396 23 C 0.078 3.922 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.166 0.834 28 H 0.403 0.597 29 H 0.114 0.886 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.255 0.745 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.440 -13.081 -5.991 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.099 3.901 4 C -0.263 4.263 5 C -0.102 4.102 6 C 0.377 3.623 7 O -0.399 6.399 8 N -0.348 5.348 9 C -0.014 4.014 10 C 0.028 3.972 11 N -0.334 5.334 12 C -0.353 4.353 13 H 0.099 0.901 14 C -0.203 4.203 15 N -0.565 5.565 16 Si 0.745 3.255 17 H -0.212 1.212 18 H -0.215 1.215 19 H -0.210 1.210 20 C -0.013 4.013 21 N -0.081 5.081 22 N -0.193 5.193 23 C -0.063 4.063 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.184 0.816 28 H 0.238 0.762 29 H 0.132 0.868 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.054 -12.570 -5.791 25.196 hybrid contribution 0.057 0.355 0.350 0.501 sum -20.997 -12.215 -5.442 24.894 Atomic orbital electron populations 1.23646 0.78147 1.05277 1.01451 1.86311 1.21484 1.21658 1.89979 1.19557 0.91104 0.78890 1.00587 1.20390 0.91958 0.95778 1.18177 1.22070 0.93010 0.93075 1.02064 1.16903 0.85583 0.82509 0.77272 1.90813 1.34137 1.65183 1.49782 1.46037 1.10906 1.05438 1.72458 1.24009 0.83665 0.92286 1.01461 1.22723 0.96868 0.86391 0.91204 1.45709 1.38683 1.30130 1.18862 1.18933 1.10110 1.03231 1.03033 0.90092 1.24822 1.00040 0.98905 0.96581 1.69820 1.42536 1.34333 1.09788 0.86166 0.81152 0.81040 0.77168 1.21193 1.21542 1.20984 1.22866 0.93617 0.90822 0.94036 1.77733 0.95206 1.10925 1.24249 1.49056 1.07008 1.03024 1.60221 1.22503 0.74859 1.05559 1.03357 0.91696 0.91953 0.87350 0.81626 0.76227 0.86834 0.95234 0.90338 0.93477 0.93101 0.94601 0.90368 0.88307 0.88757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.40 101.05 0.95 0.99 16 2 O -0.29 -2.75 10.57 -19.04 -0.20 -2.95 16 3 C 0.26 3.14 7.78 -16.72 -0.13 3.01 16 4 C -0.23 -3.31 10.59 -39.46 -0.42 -3.73 16 5 C 0.07 1.02 7.09 -82.91 -0.59 0.43 16 6 C 0.60 10.68 7.83 -12.39 -0.10 10.59 16 7 O -0.53 -11.06 16.52 5.31 0.09 -10.97 16 8 N -0.70 -12.05 5.37 -56.34 -0.30 -12.35 16 9 C 0.09 1.84 4.40 -70.16 -0.31 1.53 16 10 C 0.15 3.82 7.33 -2.84 -0.02 3.79 16 11 N -0.61 -15.95 3.70 -177.91 -0.66 -16.60 16 12 C -0.23 -6.44 10.70 -15.06 -0.16 -6.60 16 13 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 15 N -0.92 -27.92 11.39 55.49 0.63 -27.29 16 16 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.11 2.34 8.69 -2.97 -0.03 2.31 16 21 N -0.25 -3.49 12.26 33.34 0.41 -3.08 16 22 N -0.40 -4.33 4.03 -68.18 -0.28 -4.60 16 23 C 0.08 0.43 9.59 59.85 0.57 1.00 16 24 H 0.06 0.21 5.80 -51.93 -0.30 -0.09 16 25 H 0.06 0.19 6.62 -51.93 -0.34 -0.15 16 26 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 28 H 0.40 6.13 8.41 -40.82 -0.34 5.79 16 29 H 0.11 2.45 7.51 -51.93 -0.39 2.06 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 2.18 7.17 -51.93 -0.37 1.81 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.08 0.32 7.64 -51.93 -0.40 -0.07 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.27 4.64 -51.93 -0.24 0.03 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -35.67 316.26 -5.36 -41.02 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.47 Total: 1.57 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -0.32 Total: 13.05 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.20 Total: -63.93 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.11 Total: -13.92 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.67 -5.36 -41.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030652279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.261 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds