Wall clock time and date at job start Tue Mar 31 2020 01:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47243 * 2 1 4 4 C 1.34769 * 120.00327 * 84.16561 * 3 2 1 5 5 O 1.21507 * 120.00506 * 175.39388 * 4 3 2 6 6 C 1.48275 * 119.99945 * 355.39077 * 4 3 2 7 7 C 1.47490 * 128.71617 * 179.97438 * 6 4 3 8 8 N 1.30646 * 102.72127 * 180.02562 * 7 6 4 9 9 O 1.20834 * 109.61731 * 0.02562 * 8 7 6 10 10 N 1.20908 * 115.90918 * 359.97438 * 9 8 7 11 11 C 1.46510 * 119.99948 * 264.17059 * 3 2 1 12 12 H 1.08995 * 110.88451 * 180.87357 * 11 3 2 13 13 C 1.55148 * 111.00614 * 56.98648 * 11 3 2 14 14 C 1.54326 * 102.94471 * 277.43368 * 13 11 3 15 15 N 1.47029 * 107.26867 * 337.80269 * 14 13 11 16 16 C 1.36930 * 125.64739 * 178.98578 * 15 14 13 17 17 H 1.08001 * 119.99819 * 179.97438 * 16 15 14 18 18 C 1.38809 * 120.00063 * 359.97438 * 16 15 14 19 19 N 1.31618 * 120.00064 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47284 * 89.99830 * 20 18 16 22 22 H 1.48503 * 109.47418 * 210.00140 * 20 18 16 23 23 H 1.48509 * 109.47016 * 329.99824 * 20 18 16 24 24 C 1.47420 * 108.70090 * 358.94457 * 15 14 13 25 25 H 1.09002 * 109.47260 * 172.76361 * 1 2 3 26 26 H 1.09005 * 109.47136 * 292.76488 * 1 2 3 27 27 H 1.09002 * 109.47268 * 52.76458 * 1 2 3 28 28 H 1.08999 * 109.46591 * 239.99747 * 2 1 3 29 29 H 1.09000 * 109.46894 * 120.00006 * 2 1 3 30 30 H 1.08006 * 128.63654 * 359.74770 * 7 6 4 31 31 H 1.09009 * 110.72145 * 35.79096 * 13 11 3 32 32 H 1.09000 * 110.72217 * 159.06693 * 13 11 3 33 33 H 1.08989 * 109.88695 * 97.22511 * 14 13 11 34 34 H 1.09008 * 109.88106 * 218.39217 * 14 13 11 35 35 H 0.97002 * 119.99970 * 179.97438 * 19 18 16 36 36 H 1.09004 * 110.37002 * 265.28794 * 24 15 14 37 37 H 1.09010 * 110.36636 * 142.96308 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1311 2.0561 1.1611 5 8 2.6143 3.1709 1.1714 6 6 1.6656 1.4382 2.4260 7 6 1.6962 1.9959 3.7910 8 7 1.1686 1.0376 4.5052 9 8 0.8773 0.1101 3.7876 10 7 1.1222 0.2542 2.6124 11 6 2.3840 2.0288 -1.2623 12 1 2.7408 3.0440 -1.0890 13 6 1.1937 2.0198 -2.2573 14 6 1.2801 0.6134 -2.8869 15 7 2.6614 0.1411 -2.7121 16 6 3.1465 -1.0740 -3.1163 17 1 4.1816 -1.3275 -2.9412 18 6 2.3078 -1.9798 -3.7511 19 7 1.0462 -1.6710 -3.9641 20 14 2.9698 -3.6371 -4.3033 21 1 2.8011 -4.6269 -3.2093 22 1 2.2233 -4.0935 -5.5032 23 1 4.4113 -3.5083 -4.6364 24 6 3.4378 1.1926 -2.0304 25 1 -0.3634 -1.0195 -0.1294 26 1 -0.3634 0.3977 0.9477 27 1 -0.3634 0.6218 -0.8182 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0671 2.9557 4.1192 31 1 0.2487 2.1485 -1.7294 32 1 1.3203 2.7909 -3.0171 33 1 0.5904 -0.0622 -2.3811 34 1 1.0382 0.6670 -3.9484 35 1 0.4602 -2.3038 -4.4080 36 1 3.9569 1.8143 -2.7600 37 1 4.1497 0.7479 -1.3348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033996749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:23 Heat of formation + Delta-G solvation = 134.336898 kcal Electronic energy + Delta-G solvation = -23130.326916 eV Core-core repulsion = 19722.256126 eV Total energy + Delta-G solvation = -3408.070789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.94161 -40.12978 -37.70348 -35.28505 -34.58771 -34.14077 -32.30491 -30.38139 -29.37716 -27.44099 -25.92419 -24.52930 -24.06061 -22.82778 -21.28071 -20.16565 -19.14386 -19.01317 -18.14375 -17.33124 -16.99733 -16.18310 -15.04412 -14.93623 -14.74463 -14.30460 -13.92403 -13.65798 -13.04554 -12.86912 -12.72660 -12.19458 -12.02867 -11.94008 -11.67052 -11.45509 -11.28616 -11.03387 -10.95755 -10.85295 -10.78198 -10.48962 -10.40025 -10.19626 -9.99470 -9.75173 -9.70247 -8.75606 -8.40746 -6.90590 -5.81213 -3.16017 0.76825 1.25526 2.69440 3.01025 3.34773 3.39673 3.41132 3.42171 3.49189 3.90292 4.41874 4.64080 4.75571 5.22629 5.25572 5.36509 5.39526 5.54252 5.59942 5.74782 5.83264 5.95231 6.07278 6.22467 6.25655 6.42039 6.44371 6.52918 6.68367 6.76548 6.97022 7.46976 7.51394 7.56549 7.74410 8.05671 8.14356 8.38862 9.11624 9.70767 10.35150 11.29550 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.005601 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.744036 B = 4998.243868 C = 5583.620161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.076 3.924 3 N -0.560 5.560 4 C 0.595 3.405 5 O -0.533 6.533 6 C -0.035 4.035 7 C 0.033 3.967 8 N -0.360 5.360 9 O 0.332 5.668 10 N -0.305 5.305 11 C 0.122 3.878 12 H 0.104 0.896 13 C -0.157 4.157 14 C 0.167 3.833 15 N -0.602 5.602 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.003 4.003 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.125 3.875 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.142 0.858 29 H 0.073 0.927 30 H 0.225 0.775 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.253 0.747 36 H 0.035 0.965 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 6.239 11.197 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.046 4.046 3 N -0.291 5.291 4 C 0.379 3.621 5 O -0.410 6.410 6 C -0.200 4.200 7 C -0.153 4.153 8 N -0.084 5.084 9 O 0.108 5.892 10 N -0.026 5.026 11 C 0.018 3.982 12 H 0.122 0.878 13 C -0.196 4.196 14 C 0.043 3.957 15 N -0.329 5.329 16 C -0.363 4.363 17 H 0.096 0.904 18 C -0.199 4.199 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.002 4.002 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.159 0.841 29 H 0.091 0.909 30 H 0.241 0.759 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.331 5.598 11.409 12.778 hybrid contribution 0.623 -0.108 -0.629 0.891 sum -0.709 5.490 10.781 12.119 Atomic orbital electron populations 1.22169 0.95840 1.02782 1.00661 1.22404 0.94898 0.80754 1.06550 1.47816 1.61278 1.14826 1.05136 1.16649 0.79439 0.84794 0.81205 1.90781 1.45693 1.18872 1.85646 1.26324 1.04288 0.91495 0.97935 1.27680 0.99050 1.01390 0.87218 1.75028 1.14666 0.97879 1.20857 1.85111 1.58111 1.34953 1.11016 1.75754 1.11369 1.17468 0.98033 1.22414 0.96995 0.96926 0.81815 0.87850 1.23327 0.97132 1.01380 0.97803 1.21397 0.86852 0.88597 0.98898 1.44605 1.06327 1.13875 1.68096 1.19028 0.95070 0.89833 1.32330 0.90395 1.24777 0.95867 0.98625 1.00671 1.69951 1.04108 1.35325 1.47120 0.86151 0.77924 0.83825 0.78037 1.21510 1.21661 1.20724 1.21914 0.93182 0.91069 0.94030 0.91362 0.94151 0.91781 0.84093 0.90905 0.75896 0.91569 0.91057 0.92086 0.93882 0.93617 0.94717 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.77 37.16 0.33 -2.25 16 2 C 0.08 1.34 4.70 -4.05 -0.02 1.32 16 3 N -0.56 -9.56 2.53 -164.62 -0.42 -9.98 16 4 C 0.60 9.70 7.65 -12.14 -0.09 9.60 16 5 O -0.53 -9.45 16.43 5.36 0.09 -9.37 16 6 C -0.04 -0.49 6.91 -80.07 -0.55 -1.04 16 7 C 0.03 0.36 12.63 -14.29 -0.18 0.18 16 8 N -0.36 -4.24 12.22 30.71 0.38 -3.86 16 9 O 0.33 4.15 11.65 27.26 0.32 4.47 16 10 N -0.30 -4.23 7.47 33.50 0.25 -3.98 16 11 C 0.12 2.13 3.67 -65.78 -0.24 1.89 16 12 H 0.10 1.73 7.02 -51.93 -0.36 1.36 16 13 C -0.16 -2.78 6.00 -24.90 -0.15 -2.93 16 14 C 0.17 3.68 4.17 -3.06 -0.01 3.67 16 15 N -0.60 -13.97 1.90 -170.06 -0.32 -14.29 16 16 C -0.23 -6.06 9.89 -15.06 -0.15 -6.21 16 17 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 18 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 19 N -0.92 -25.09 10.31 55.49 0.57 -24.52 16 20 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.12 2.45 6.53 -2.53 -0.02 2.43 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.04 0.61 6.30 -51.93 -0.33 0.28 16 27 H 0.06 1.10 4.90 -51.93 -0.25 0.84 16 28 H 0.14 3.01 4.29 -51.93 -0.22 2.79 16 29 H 0.07 1.24 5.84 -51.93 -0.30 0.94 16 30 H 0.22 1.71 8.06 -52.48 -0.42 1.29 16 31 H 0.07 1.11 6.59 -51.92 -0.34 0.77 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.44 4.63 -51.94 -0.24 1.20 16 34 H 0.04 1.08 7.51 -51.92 -0.39 0.69 16 35 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 LS Contribution 293.63 15.07 4.43 4.43 Total: -1.00 -27.89 293.63 -5.02 -32.91 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -4.10 Total: 1.61 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -1.18 Total: 6.50 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.46 Total: -56.63 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: 0.41 Total: -4.90 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.89 -5.02 -32.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033996749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.248 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds