Wall clock time and date at job start Tue Mar 31 2020 02:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34943 * 126.54427 * 2 1 4 4 O 1.35204 * 125.49171 * 359.95859 * 3 2 1 5 5 N 1.31544 * 109.01318 * 179.97438 * 3 2 1 6 6 C 1.33218 * 109.76271 * 0.02562 * 5 3 2 7 7 C 1.36724 * 107.96310 * 0.24168 * 6 5 3 8 8 C 1.46374 * 126.82403 * 179.73929 * 7 6 5 9 9 O 1.21740 * 120.00000 * 185.51056 * 8 7 6 10 10 N 1.34775 * 120.00391 * 5.51154 * 8 7 6 11 11 C 1.46496 * 120.00289 * 185.14260 * 10 8 7 12 12 C 1.53002 * 109.47325 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.96409 * 53.32390 * 12 11 10 14 14 C 1.53944 * 113.77137 * 185.00303 * 12 11 10 15 15 C 1.53942 * 86.29261 * 137.90616 * 14 12 11 16 16 N 1.47579 * 86.11704 * 336.39565 * 15 14 12 17 17 C 1.36939 * 134.48840 * 204.64871 * 16 15 14 18 18 H 1.08007 * 119.99436 * 179.97438 * 17 16 15 19 19 C 1.38812 * 120.00187 * 359.97438 * 17 16 15 20 20 N 1.31610 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99780 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47158 * 60.00099 * 21 19 17 23 23 H 1.48498 * 109.46942 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47116 * 299.99893 * 21 19 17 25 25 H 1.08991 * 109.47373 * 85.69010 * 1 2 3 26 26 H 1.09008 * 109.47185 * 205.68875 * 1 2 3 27 27 H 1.09000 * 109.46775 * 325.68224 * 1 2 3 28 28 H 0.96693 * 114.00416 * 269.99462 * 4 3 2 29 29 H 1.07997 * 126.01833 * 179.97438 * 6 5 3 30 30 H 0.97002 * 119.99989 * 5.14219 * 10 8 7 31 31 H 1.09003 * 109.47187 * 299.99854 * 11 10 8 32 32 H 1.09007 * 109.47161 * 59.99803 * 11 10 8 33 33 H 1.09002 * 113.73875 * 252.25355 * 14 12 11 34 34 H 1.09005 * 113.74037 * 23.45099 * 14 12 11 35 35 H 1.08998 * 113.76756 * 90.69634 * 15 14 12 36 36 H 1.09001 * 113.77215 * 221.97436 * 15 14 12 37 37 H 0.97003 * 119.99777 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0841 0.0000 4 8 1.8515 2.3703 -0.0008 5 7 3.5228 0.6879 0.0006 6 6 3.5747 -0.6433 0.0004 7 6 2.2915 -1.1153 -0.0058 8 6 1.8727 -2.5178 -0.0136 9 8 0.6933 -2.8002 -0.1198 10 7 2.7926 -3.4965 0.0969 11 6 2.3879 -4.8993 -0.0238 12 6 3.6142 -5.7997 0.1388 13 1 4.1723 -5.5972 1.0528 14 6 3.3221 -7.2935 -0.0919 15 6 4.6497 -7.3304 -0.8702 16 7 4.4569 -5.8809 -1.0700 17 6 4.8871 -4.9752 -2.0027 18 1 4.5965 -3.9381 -1.9224 19 6 5.6967 -5.3900 -3.0512 20 7 6.0504 -6.6539 -3.1493 21 14 6.2840 -4.1543 -4.3230 22 1 7.0797 -3.0946 -3.6530 23 1 7.1278 -4.8448 -5.3312 24 1 5.1108 -3.5414 -4.9963 25 1 -0.3634 0.0772 -1.0247 26 1 -0.3634 -0.9262 0.4455 27 1 -0.3633 0.8488 0.5794 28 1 1.7308 2.7441 -0.8843 29 1 4.4723 -1.2439 0.0003 30 1 3.7228 -3.2721 0.2563 31 1 1.6584 -5.1349 0.7511 32 1 1.9426 -5.0659 -1.0047 33 1 3.3320 -7.8886 0.8213 34 1 2.4436 -7.4785 -0.7101 35 1 5.5138 -7.5777 -0.2535 36 1 4.6035 -7.9126 -1.7905 37 1 6.6158 -6.9438 -3.8822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038587136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:31 Heat of formation + Delta-G solvation = 50.004491 kcal Electronic energy + Delta-G solvation = -21905.324191 eV Core-core repulsion = 18493.596474 eV Total energy + Delta-G solvation = -3411.727717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30433 -39.26581 -37.93842 -37.44497 -34.63539 -33.81120 -32.20927 -29.96834 -27.96308 -27.37281 -27.11903 -23.39269 -23.38099 -22.07745 -21.47329 -20.17852 -19.13610 -18.74495 -17.60533 -16.78003 -16.38000 -16.04656 -15.42644 -15.23091 -14.75447 -14.46094 -14.27173 -13.86599 -13.71970 -13.26966 -13.04959 -12.84748 -12.79888 -12.35306 -11.92077 -11.44868 -11.14550 -11.02855 -10.74332 -10.59265 -10.38196 -10.03270 -9.91308 -9.79824 -9.75957 -9.43729 -8.83338 -8.80136 -8.47090 -6.91638 -5.77807 -3.10643 1.14060 2.07804 2.56825 3.36520 3.39294 3.44029 3.44441 3.49761 3.65841 4.41764 4.61826 4.67240 4.98862 5.00881 5.10765 5.27863 5.36235 5.39961 5.58350 5.65015 5.85836 5.87719 6.02715 6.24932 6.28708 6.35634 6.37314 6.58504 6.63875 6.78109 7.22761 7.31428 7.38213 7.57368 7.63549 7.76414 7.96768 8.34345 9.02532 9.69850 10.57241 11.38718 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.005211 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.123040 B = 5372.269500 C = 6571.473041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.430 5.430 3 C 0.388 3.612 4 O -0.441 6.441 5 N -0.486 5.486 6 C 0.056 3.944 7 C -0.071 4.071 8 C 0.592 3.408 9 O -0.556 6.556 10 N -0.697 5.697 11 C 0.126 3.874 12 C 0.125 3.875 13 H 0.052 0.948 14 C -0.155 4.155 15 C 0.159 3.841 16 N -0.602 5.602 17 C -0.222 4.222 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.906 3.094 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.286 1.286 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.403 0.597 29 H 0.189 0.811 30 H 0.406 0.594 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 9.976 7.221 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.123 5.123 3 C 0.089 3.911 4 O -0.242 6.242 5 N -0.214 5.214 6 C -0.098 4.098 7 C -0.187 4.187 8 C 0.378 3.622 9 O -0.436 6.436 10 N -0.346 5.346 11 C 0.002 3.998 12 C 0.017 3.983 13 H 0.069 0.931 14 C -0.194 4.194 15 C 0.034 3.966 16 N -0.328 5.328 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.566 5.566 21 Si 0.736 3.264 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.212 1.212 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.105 0.895 28 H 0.260 0.740 29 H 0.206 0.794 30 H 0.241 0.759 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.694 10.441 7.428 16.068 hybrid contribution 0.155 0.573 -1.220 1.357 sum -9.539 11.014 6.208 15.838 Atomic orbital electron populations 1.22264 0.75319 1.05877 1.04068 1.45605 1.08354 1.05603 1.52703 1.20224 0.84564 0.81331 1.04978 1.84785 1.87060 1.18088 1.34257 1.70307 1.16349 1.12941 1.21843 1.22662 0.95813 0.90099 1.01275 1.20732 0.91023 0.88522 1.18463 1.16590 0.85720 0.82870 0.77041 1.90768 1.16964 1.84031 1.51880 1.45624 1.11208 1.06423 1.71343 1.21855 0.97883 0.78138 1.01936 1.22521 0.90551 0.93422 0.91792 0.93109 1.23773 1.01004 0.94817 0.99809 1.22193 0.91117 0.86279 0.97047 1.46073 1.57498 1.05754 1.23490 1.18890 1.25115 0.89749 1.01183 0.90356 1.24742 1.00185 0.96322 0.98906 1.69802 1.40071 1.13923 1.32789 0.86299 0.78469 0.80258 0.81354 1.21022 1.21602 1.21217 0.90172 0.87400 0.89543 0.73956 0.79428 0.75887 0.91787 0.90692 0.92765 0.90497 0.95532 0.90829 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.69 59.85 0.64 1.31 16 2 N -0.43 -5.70 3.20 -122.12 -0.39 -6.09 16 3 C 0.39 5.17 9.01 -89.59 -0.81 4.36 16 4 O -0.44 -4.39 13.53 -17.31 -0.23 -4.63 16 5 N -0.49 -7.44 11.22 -14.62 -0.16 -7.60 16 6 C 0.06 0.82 11.35 -17.50 -0.20 0.62 16 7 C -0.07 -1.07 6.92 -81.97 -0.57 -1.64 16 8 C 0.59 9.77 7.76 -12.99 -0.10 9.67 16 9 O -0.56 -10.26 14.89 5.15 0.08 -10.18 16 10 N -0.70 -11.20 5.50 -61.71 -0.34 -11.54 16 11 C 0.13 2.14 5.54 -4.04 -0.02 2.12 16 12 C 0.12 2.27 4.33 -66.86 -0.29 1.98 16 13 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.16 -2.70 7.86 -25.81 -0.20 -2.90 16 15 C 0.16 3.53 7.51 -2.98 -0.02 3.50 16 16 N -0.60 -14.10 3.57 -170.76 -0.61 -14.71 16 17 C -0.22 -5.77 10.51 -15.06 -0.16 -5.93 16 18 H 0.08 1.94 7.80 -52.48 -0.41 1.53 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 20 N -0.92 -26.48 11.39 55.49 0.63 -25.85 16 21 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.11 1.25 6.42 -51.92 -0.33 0.92 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.40 1.91 9.06 45.56 0.41 2.32 16 29 H 0.19 2.39 7.49 -52.49 -0.39 1.99 16 30 H 0.41 6.12 7.45 -40.82 -0.30 5.82 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 37 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -33.70 319.96 -6.97 -40.67 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.91 Total: 5.49 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -1.83 Total: 12.87 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.87 Total: -65.79 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.16 Total: -14.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.70 -6.97 -40.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038587136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.674 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds