Wall clock time and date at job start Tue Mar 31 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34948 * 126.53842 * 2 1 4 4 O 1.35201 * 125.49765 * 359.73804 * 3 2 1 5 5 N 1.31544 * 109.01001 * 180.02562 * 3 2 1 6 6 C 1.33218 * 109.76058 * 359.97438 * 5 3 2 7 7 C 1.36719 * 107.96536 * 0.02562 * 6 5 3 8 8 C 1.46385 * 126.82151 * 179.97438 * 7 6 5 9 9 O 1.21734 * 119.99393 * 185.56094 * 8 7 6 10 10 N 1.34768 * 120.00494 * 5.56709 * 8 7 6 11 11 C 1.46501 * 120.00509 * 185.15701 * 10 8 7 12 12 C 1.52993 * 109.47486 * 179.97438 * 11 10 8 13 13 H 1.09001 * 112.74004 * 303.75898 * 12 11 10 14 14 C 1.53500 * 113.46769 * 172.94023 * 12 11 10 15 15 C 1.53498 * 83.34213 * 219.14952 * 14 12 11 16 16 N 1.47067 * 87.98710 * 26.06949 * 15 14 12 17 17 C 1.36937 * 136.05939 * 152.91350 * 16 15 14 18 18 H 1.07997 * 119.99995 * 175.16220 * 17 16 15 19 19 C 1.38810 * 119.99726 * 355.16326 * 17 16 15 20 20 N 1.31625 * 120.00388 * 5.32270 * 19 17 16 21 21 Si 1.86805 * 119.99850 * 185.32404 * 19 17 16 22 22 H 1.48498 * 109.47299 * 94.99593 * 21 19 17 23 23 H 1.48493 * 109.47012 * 214.99850 * 21 19 17 24 24 H 1.48497 * 109.46703 * 334.99527 * 21 19 17 25 25 H 1.09001 * 109.47437 * 85.71716 * 1 2 3 26 26 H 1.09003 * 109.47290 * 205.71218 * 1 2 3 27 27 H 1.09000 * 109.47629 * 325.71782 * 1 2 3 28 28 H 0.96694 * 114.00233 * 89.99657 * 4 3 2 29 29 H 1.08001 * 126.01412 * 180.02562 * 6 5 3 30 30 H 0.97003 * 119.99788 * 5.15921 * 10 8 7 31 31 H 1.09001 * 109.46677 * 300.00488 * 11 10 8 32 32 H 1.09008 * 109.46845 * 59.99471 * 11 10 8 33 33 H 1.08996 * 114.20284 * 332.74203 * 14 12 11 34 34 H 1.09007 * 114.20524 * 105.56147 * 14 12 11 35 35 H 1.08992 * 113.46777 * 271.28710 * 15 14 12 36 36 H 1.08997 * 113.46068 * 140.84684 * 15 14 12 37 37 H 0.96993 * 120.00372 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2684 1.0843 0.0000 4 8 1.8514 2.3703 -0.0050 5 7 3.5227 0.6881 -0.0006 6 6 3.5746 -0.6431 -0.0004 7 6 2.2915 -1.1151 -0.0002 8 6 1.8727 -2.5178 -0.0005 9 8 0.6931 -2.8007 -0.1026 10 7 2.7930 -3.4959 0.1122 11 6 2.3881 -4.8993 -0.0013 12 6 3.6148 -5.7989 0.1624 13 1 4.4060 -5.5663 -0.5503 14 6 3.2720 -7.2935 0.2309 15 6 4.3779 -7.3157 1.2950 16 7 4.0880 -5.8969 1.5514 17 6 4.2070 -5.0427 2.6151 18 1 3.9779 -3.9943 2.4940 19 6 4.6221 -5.5245 3.8490 20 7 5.0016 -6.7788 3.9720 21 14 4.6422 -4.3926 5.3349 22 1 3.3768 -4.5519 6.0957 23 1 5.7918 -4.7417 6.2076 24 1 4.7739 -2.9843 4.8826 25 1 -0.3634 0.0767 -1.0248 26 1 -0.3634 -0.9259 0.4459 27 1 -0.3634 0.8491 0.5788 28 1 1.7268 2.7469 0.8768 29 1 4.4723 -1.2436 -0.0003 30 1 3.7234 -3.2707 0.2686 31 1 1.6603 -5.1315 0.7762 32 1 1.9407 -5.0703 -0.9805 33 1 2.2753 -7.5061 0.6175 34 1 3.5126 -7.8492 -0.6755 35 1 5.3725 -7.4880 0.8839 36 1 4.1528 -7.9645 2.1414 37 1 5.2921 -7.1153 4.8341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038587138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:34 Heat of formation + Delta-G solvation = 53.432267 kcal Electronic energy + Delta-G solvation = -21915.785352 eV Core-core repulsion = 18504.206275 eV Total energy + Delta-G solvation = -3411.579078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31077 -39.29546 -38.09773 -37.46080 -34.63439 -33.80436 -32.25592 -29.96697 -28.04443 -27.35141 -27.10631 -23.50977 -23.33794 -22.01403 -21.43120 -20.16625 -19.24368 -18.77284 -17.61395 -16.79138 -16.36434 -16.03817 -15.52764 -15.22679 -14.66067 -14.48111 -14.17971 -13.95845 -13.74402 -13.26175 -13.03517 -12.84240 -12.79384 -12.35758 -11.95565 -11.54998 -11.18782 -11.03351 -10.79766 -10.61044 -10.38105 -10.01961 -9.92009 -9.85458 -9.77117 -9.33052 -8.82980 -8.78065 -8.46594 -6.94032 -5.80724 -3.13300 1.15102 2.06629 2.56935 3.36211 3.38575 3.41843 3.43500 3.49109 3.64487 4.39844 4.60315 4.66735 4.97579 5.03991 5.15456 5.25955 5.35117 5.40282 5.52663 5.64828 5.86342 5.86859 6.02935 6.25861 6.27158 6.35036 6.36234 6.55614 6.64470 6.77960 7.18900 7.30814 7.36814 7.54596 7.63219 7.77266 7.94272 8.35961 8.98963 9.66871 10.58918 11.36321 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017229 B = 0.005133 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.805276 B = 5454.061120 C = 6468.938532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.429 5.429 3 C 0.388 3.612 4 O -0.440 6.440 5 N -0.486 5.486 6 C 0.054 3.946 7 C -0.070 4.070 8 C 0.591 3.409 9 O -0.555 6.555 10 N -0.696 5.696 11 C 0.124 3.876 12 C 0.126 3.874 13 H 0.051 0.949 14 C -0.160 4.160 15 C 0.149 3.851 16 N -0.601 5.601 17 C -0.216 4.216 18 H 0.080 0.920 19 C -0.004 4.004 20 N -0.916 5.916 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.403 0.597 29 H 0.188 0.812 30 H 0.406 0.594 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 10.349 -8.529 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.122 5.122 3 C 0.089 3.911 4 O -0.241 6.241 5 N -0.215 5.215 6 C -0.100 4.100 7 C -0.186 4.186 8 C 0.377 3.623 9 O -0.436 6.436 10 N -0.345 5.345 11 C 0.000 4.000 12 C 0.019 3.981 13 H 0.068 0.932 14 C -0.199 4.199 15 C 0.023 3.977 16 N -0.327 5.327 17 C -0.343 4.343 18 H 0.098 0.902 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.737 3.263 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 H 0.099 0.901 26 H 0.127 0.873 27 H 0.101 0.899 28 H 0.260 0.740 29 H 0.205 0.795 30 H 0.242 0.758 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.978 10.823 -8.856 15.629 hybrid contribution -0.185 0.490 1.460 1.551 sum -7.163 11.314 -7.396 15.297 Atomic orbital electron populations 1.22249 0.75270 1.05649 1.04167 1.45610 1.08393 1.05607 1.52557 1.20219 0.84574 0.81335 1.05008 1.84811 1.87050 1.18033 1.34219 1.70291 1.16373 1.12911 1.21908 1.22611 0.95731 0.90110 1.01555 1.20732 0.91017 0.88550 1.18314 1.16597 0.85744 0.82864 0.77127 1.90769 1.16864 1.83969 1.51968 1.45614 1.11276 1.06341 1.71289 1.21898 0.98884 0.78239 1.00968 1.22447 0.92945 0.93265 0.89486 0.93222 1.23646 1.01201 0.95273 0.99753 1.22077 0.93128 0.87816 0.94668 1.45703 1.73388 1.08275 1.05328 1.18839 1.39440 0.89925 0.86069 0.90211 1.24769 1.01472 0.96431 0.97449 1.69827 1.49009 1.13845 1.23619 0.86186 0.77258 0.79721 0.83128 1.21649 1.21690 1.20558 0.90085 0.87293 0.89888 0.74014 0.79547 0.75832 0.90687 0.91997 0.90175 0.92277 0.95743 0.90829 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.70 59.84 0.64 1.35 16 2 N -0.43 -5.73 3.20 -122.12 -0.39 -6.12 16 3 C 0.39 5.15 9.01 -89.58 -0.81 4.34 16 4 O -0.44 -4.39 13.53 -17.30 -0.23 -4.63 16 5 N -0.49 -7.33 11.22 -14.62 -0.16 -7.50 16 6 C 0.05 0.78 11.35 -17.50 -0.20 0.58 16 7 C -0.07 -1.05 6.92 -81.98 -0.57 -1.62 16 8 C 0.59 9.83 7.76 -12.99 -0.10 9.73 16 9 O -0.56 -10.38 14.89 5.16 0.08 -10.30 16 10 N -0.70 -11.30 5.35 -61.71 -0.33 -11.63 16 11 C 0.12 2.11 5.53 -4.04 -0.02 2.09 16 12 C 0.13 2.30 4.10 -72.40 -0.30 2.00 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.16 -2.77 8.03 -26.21 -0.21 -2.98 16 15 C 0.15 3.29 7.45 -8.51 -0.06 3.22 16 16 N -0.60 -14.09 3.65 -177.00 -0.65 -14.74 16 17 C -0.22 -5.61 10.54 -15.06 -0.16 -5.77 16 18 H 0.08 1.99 7.48 -52.49 -0.39 1.60 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -26.43 11.49 55.49 0.64 -25.79 16 21 Si 0.91 21.77 29.56 -169.99 -5.02 16.75 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.11 1.31 6.40 -51.93 -0.33 0.98 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.40 1.89 9.06 45.56 0.41 2.30 16 29 H 0.19 2.22 7.49 -52.49 -0.39 1.83 16 30 H 0.41 6.25 7.28 -40.82 -0.30 5.95 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.08 1.39 8.12 -51.93 -0.42 0.97 16 34 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.84 7.04 -51.93 -0.37 1.47 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -33.81 319.28 -7.03 -40.84 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -3.88 Total: 5.57 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -1.88 Total: 12.75 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.89 Total: -65.78 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.16 Total: -14.93 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.81 -7.03 -40.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038587138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.271 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds