Wall clock time and date at job start Tue Mar 31 2020 02:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34268 * 125.75465 * 2 1 4 4 C 1.38037 * 107.41727 * 180.10868 * 3 2 1 5 5 C 1.47427 * 126.41506 * 179.87291 * 4 3 2 6 6 O 1.21605 * 120.00194 * 359.70971 * 5 4 3 7 7 N 1.34775 * 120.00469 * 179.71548 * 5 4 3 8 8 C 1.46503 * 120.00617 * 179.97438 * 7 5 4 9 9 C 1.52993 * 109.47165 * 179.97438 * 8 7 5 10 10 O 1.42895 * 112.94756 * 53.41421 * 9 8 7 11 11 C 1.53942 * 113.74365 * 281.67534 * 9 8 7 12 12 N 1.47587 * 86.11857 * 222.04915 * 11 9 8 13 13 C 1.36932 * 134.48987 * 204.63757 * 12 11 9 14 14 H 1.08006 * 119.99782 * 173.48485 * 13 12 11 15 15 C 1.38809 * 120.00385 * 353.48850 * 13 12 11 16 16 N 1.31612 * 119.99906 * 5.06137 * 15 13 12 17 17 Si 1.86800 * 119.99957 * 185.06257 * 15 13 12 18 18 H 1.48501 * 109.47122 * 94.98330 * 17 15 13 19 19 H 1.48494 * 109.47311 * 214.98447 * 17 15 13 20 20 H 1.48507 * 109.47363 * 334.98801 * 17 15 13 21 21 C 1.47577 * 91.01353 * 24.64355 * 12 11 9 22 22 C 1.41291 * 107.17278 * 359.61433 * 4 3 2 23 23 N 1.30451 * 108.02074 * 0.23504 * 22 4 3 24 24 H 1.08996 * 109.47662 * 270.30527 * 1 2 3 25 25 H 1.09006 * 109.47419 * 30.30966 * 1 2 3 26 26 H 1.09004 * 109.47323 * 150.30649 * 1 2 3 27 27 H 1.08000 * 126.28882 * 359.96297 * 3 2 1 28 28 H 0.97007 * 119.99538 * 0.02562 * 7 5 4 29 29 H 1.09003 * 109.46654 * 60.00186 * 8 7 5 30 30 H 1.09003 * 109.47087 * 300.00584 * 8 7 5 31 31 H 0.96707 * 113.99611 * 309.66490 * 10 9 8 32 32 H 1.09000 * 113.77341 * 336.35219 * 11 9 8 33 33 H 1.09001 * 113.76895 * 107.75452 * 11 9 8 34 34 H 0.97007 * 119.99947 * 180.02562 * 16 15 13 35 35 H 1.08996 * 113.77072 * 221.06249 * 21 12 11 36 36 H 1.08996 * 113.87205 * 89.66946 * 21 12 11 37 37 H 1.08003 * 125.99221 * 180.24030 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5597 0.6553 -0.0025 5 6 4.7637 1.5062 -0.0060 6 8 4.6525 2.7171 -0.0123 7 7 5.9877 0.9420 -0.0024 8 6 7.1841 1.7874 -0.0065 9 6 8.4331 0.9038 -0.0005 10 8 8.4356 -0.0644 -1.0515 11 6 8.7734 0.3210 1.3831 12 7 10.1778 0.6405 1.0611 13 6 11.3907 0.1556 1.4719 14 1 12.2982 0.4985 0.9971 15 6 11.4540 -0.7766 2.4985 16 7 10.3456 -1.2690 3.0094 17 14 13.1124 -1.3321 3.1547 18 1 13.4701 -0.5211 4.3462 19 1 13.0391 -2.7655 3.5354 20 1 14.1464 -1.1511 2.1042 21 6 9.7498 1.6925 0.1187 22 6 3.5310 -0.7573 0.0051 23 7 2.2826 -1.1355 0.0065 24 1 -0.3634 0.0055 1.0276 25 1 -0.3634 0.8872 -0.5187 26 1 -0.3634 -0.8927 -0.5091 27 1 1.9165 2.1170 -0.0006 28 1 6.0764 -0.0240 0.0021 29 1 7.1839 2.4215 0.8801 30 1 7.1847 2.4120 -0.8999 31 1 7.6211 -0.5824 -1.1110 32 1 8.3707 0.8994 2.2147 33 1 8.5749 -0.7472 1.4708 34 1 10.3898 -1.9202 3.7271 35 1 10.3307 1.7194 -0.8031 36 1 9.6336 2.6746 0.5771 37 1 4.3918 -1.4096 0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271237111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:00 Heat of formation + Delta-G solvation = 28.224753 kcal Electronic energy + Delta-G solvation = -21434.188234 eV Core-core repulsion = 18021.516077 eV Total energy + Delta-G solvation = -3412.672157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.32869 -40.89098 -39.69497 -36.45198 -35.23955 -34.29521 -33.96489 -31.49494 -30.20907 -28.38124 -27.16647 -26.68561 -24.20885 -23.20102 -21.91913 -21.23253 -20.87584 -19.35878 -18.69265 -17.56498 -17.13902 -16.92173 -16.66031 -16.23178 -16.00789 -15.70219 -15.53215 -15.31447 -14.82831 -14.53220 -14.27192 -13.88518 -13.81942 -13.54785 -13.42572 -13.30738 -12.93995 -12.84403 -12.52929 -12.20133 -12.11449 -11.74549 -11.37554 -10.94090 -10.89782 -10.69141 -10.57193 -10.16105 -9.63096 -8.90552 -7.91194 -5.22691 0.55441 1.16194 1.46168 1.46827 1.48041 1.56877 2.24849 2.47646 2.48852 3.09586 3.28216 3.38275 3.52408 3.66961 3.83211 3.94505 4.12006 4.18989 4.42971 4.44577 4.58932 4.69123 4.72308 4.73758 4.82748 4.87125 4.99877 5.20938 5.32878 5.36482 5.43889 5.52231 5.89434 5.93339 6.47221 6.60435 6.87061 6.92885 7.28083 7.60367 8.55033 9.26157 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.003480 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.118979 B = 8044.369822 C = 8598.803230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.363 5.363 3 C 0.135 3.865 4 C -0.317 4.317 5 C 0.598 3.402 6 O -0.589 6.589 7 N -0.714 5.714 8 C 0.121 3.879 9 C 0.099 3.901 10 O -0.540 6.540 11 C 0.146 3.854 12 N -0.636 5.636 13 C -0.234 4.234 14 H 0.082 0.918 15 C -0.065 4.065 16 N -0.950 5.950 17 Si 0.978 3.022 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.269 1.269 21 C 0.129 3.871 22 C 0.084 3.916 23 N -0.326 5.326 24 H 0.092 0.908 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.211 0.789 28 H 0.408 0.592 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.383 0.617 32 H 0.027 0.973 33 H 0.046 0.954 34 H 0.249 0.751 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.991 3.300 -7.620 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.141 5.141 3 C -0.018 4.018 4 C -0.332 4.332 5 C 0.388 3.612 6 O -0.471 6.471 7 N -0.366 5.366 8 C -0.004 4.004 9 C 0.056 3.944 10 O -0.346 6.346 11 C 0.020 3.980 12 N -0.363 5.363 13 C -0.362 4.362 14 H 0.099 0.901 15 C -0.259 4.259 16 N -0.599 5.599 17 Si 0.806 3.194 18 H -0.214 1.214 19 H -0.220 1.220 20 H -0.193 1.193 21 C 0.004 3.996 22 C -0.104 4.104 23 N -0.146 5.146 24 H 0.110 0.890 25 H 0.139 0.861 26 H 0.116 0.884 27 H 0.228 0.772 28 H 0.244 0.756 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.232 0.768 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -21.219 3.173 -7.566 22.750 hybrid contribution 1.081 -0.403 0.892 1.458 sum -20.138 2.770 -6.674 21.395 Atomic orbital electron populations 1.22400 0.70908 1.06690 1.05317 1.48811 1.08675 1.03115 1.53454 1.23346 0.89686 0.94795 0.93988 1.20208 0.93405 0.93825 1.25802 1.17448 0.82656 0.86579 0.74548 1.90736 1.87382 1.15685 1.53303 1.45560 1.04862 1.10781 1.75356 1.21714 0.82424 0.93248 1.03038 1.23142 0.93554 0.89646 0.88066 1.86566 1.43575 1.52573 1.51934 1.22787 0.83641 0.98744 0.92792 1.46036 1.01932 1.38517 1.49773 1.19373 0.84561 1.19116 1.13194 0.90056 1.25617 1.00704 1.00436 0.99107 1.69989 1.27105 1.33387 1.29376 0.85072 0.79297 0.76732 0.78319 1.21442 1.21980 1.19334 1.22799 0.90939 0.92451 0.93443 1.24453 0.95945 0.93858 0.96106 1.77158 1.02450 1.09129 1.25901 0.88956 0.86142 0.88352 0.77233 0.75595 0.90895 0.90056 0.76750 0.95565 0.93561 0.94246 0.92391 0.91032 0.77377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.44 127.77 1.46 2.01 16 2 N -0.36 -5.96 3.98 -367.79 -1.46 -7.43 16 3 C 0.14 2.42 11.30 84.27 0.95 3.37 16 4 C -0.32 -7.15 6.13 -20.15 -0.12 -7.28 16 5 C 0.60 16.45 7.81 86.66 0.68 17.12 16 6 O -0.59 -19.98 16.90 -4.05 -0.07 -20.05 16 7 N -0.71 -18.17 5.33 -466.37 -2.49 -20.66 16 8 C 0.12 3.56 5.28 86.38 0.46 4.02 16 9 C 0.10 3.52 1.52 -10.13 -0.02 3.51 16 10 O -0.54 -18.74 13.51 -148.98 -2.01 -20.76 16 11 C 0.15 6.76 6.83 86.48 0.59 7.35 16 12 N -0.64 -33.15 3.70 -720.19 -2.66 -35.81 16 13 C -0.23 -13.45 10.69 84.03 0.90 -12.55 16 14 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 15 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 16 N -0.95 -57.38 11.51 21.65 0.25 -57.13 16 17 Si 0.98 46.37 29.56 68.60 2.03 48.39 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 C 0.13 5.24 8.34 86.48 0.72 5.96 16 22 C 0.08 1.72 11.50 85.65 0.99 2.70 16 23 N -0.33 -7.07 12.50 -56.27 -0.70 -7.77 16 24 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16 26 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 28 H 0.41 8.61 6.26 -92.70 -0.58 8.03 16 29 H 0.07 2.29 8.04 -2.39 -0.02 2.27 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.38 9.55 7.61 -74.05 -0.56 8.99 16 32 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 33 H 0.05 2.37 7.35 -2.39 -0.02 2.35 16 34 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.62 8.10 -2.39 -0.02 2.60 16 37 H 0.21 3.14 7.50 -2.91 -0.02 3.12 16 Total: -1.00 -80.47 322.43 -0.08 -80.55 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.03 Total: 17.76 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 7.07 Total: 22.89 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -7.06 Total: -128.79 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -2.08 Total: -40.81 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -80.47 -0.08 -80.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271237111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.772 kcal (2) G-P(sol) polarization free energy of solvation -80.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds