Wall clock time and date at job start Tue Mar 31 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34499 * 126.46898 * 2 1 4 4 N 1.30864 * 109.15905 * 180.29141 * 3 2 1 5 5 C 1.33317 * 109.68558 * 359.73305 * 4 3 2 6 6 C 1.36664 * 107.78745 * 359.97438 * 5 4 3 7 7 C 1.46768 * 126.84749 * 179.97438 * 6 5 4 8 8 O 1.21682 * 119.99992 * 185.00660 * 7 6 5 9 9 N 1.34775 * 119.99869 * 5.00611 * 7 6 5 10 10 C 1.46499 * 120.00125 * 185.01931 * 9 7 6 11 11 C 1.53002 * 109.47022 * 180.02562 * 10 9 7 12 12 O 1.42904 * 113.27844 * 313.06213 * 11 10 9 13 13 C 1.53490 * 114.20406 * 180.02562 * 11 10 9 14 14 N 1.47063 * 87.98695 * 220.34176 * 13 11 10 15 15 C 1.36940 * 136.06088 * 207.08235 * 14 13 11 16 16 H 1.07993 * 119.99785 * 354.88763 * 15 14 13 17 17 C 1.38808 * 119.99700 * 174.88409 * 15 14 13 18 18 N 1.31625 * 119.99654 * 184.82752 * 17 15 14 19 19 Si 1.86807 * 120.00467 * 4.55864 * 17 15 14 20 20 H 1.48494 * 109.47027 * 54.35742 * 19 17 15 21 21 H 1.48499 * 109.46936 * 174.36192 * 19 17 15 22 22 H 1.48498 * 109.46705 * 294.35782 * 19 17 15 23 23 C 1.47075 * 87.88321 * 27.34251 * 14 13 11 24 24 H 1.09004 * 109.47024 * 275.04884 * 1 2 3 25 25 H 1.09002 * 109.47538 * 35.04325 * 1 2 3 26 26 H 1.09001 * 109.47262 * 155.04815 * 1 2 3 27 27 H 1.07997 * 125.42224 * 0.02590 * 3 2 1 28 28 H 1.08001 * 126.10636 * 179.97438 * 5 4 3 29 29 H 0.97006 * 119.99799 * 5.01759 * 9 7 6 30 30 H 1.08996 * 109.46739 * 60.00261 * 10 9 7 31 31 H 1.08999 * 109.46981 * 300.00073 * 10 9 7 32 32 H 0.96701 * 113.99820 * 46.94491 * 12 11 10 33 33 H 1.09001 * 113.47017 * 105.56400 * 13 11 10 34 34 H 1.09004 * 113.52404 * 335.13341 * 13 11 10 35 35 H 0.96995 * 120.00082 * 4.73220 * 18 17 15 36 36 H 1.08998 * 113.46501 * 87.43514 * 23 14 13 37 37 H 1.08999 * 113.46484 * 217.87704 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0816 0.0000 4 7 3.5138 0.6923 -0.0063 5 6 3.5691 -0.6398 -0.0047 6 6 2.2862 -1.1109 0.0036 7 6 1.8649 -2.5168 0.0076 8 8 0.6841 -2.7983 -0.0769 9 7 2.7858 -3.4959 0.1048 10 6 2.3775 -4.8988 -0.0016 11 6 3.6056 -5.7998 0.1427 12 8 4.7137 -5.3761 -0.6540 13 6 3.2996 -7.3009 0.0469 14 7 4.2616 -7.5139 1.1387 15 6 5.0755 -8.5352 1.5505 16 1 5.0315 -9.4939 1.0553 17 6 5.9570 -8.3382 2.6045 18 7 6.8055 -9.2873 2.9390 19 14 5.9443 -6.7233 3.5435 20 1 4.5709 -6.4481 4.0363 21 1 6.8753 -6.8141 4.6969 22 1 6.3770 -5.6242 2.6436 23 6 3.9599 -6.1494 1.5974 24 1 -0.3633 0.0904 1.0237 25 1 -0.3634 0.8414 -0.5901 26 1 -0.3634 -0.9317 -0.4335 27 1 1.9288 2.1081 0.0004 28 1 4.4673 -1.2395 -0.0091 29 1 3.7191 -3.2718 0.2453 30 1 1.9134 -5.0694 -0.9730 31 1 1.6628 -5.1301 0.7882 32 1 4.9039 -4.4300 -0.5917 33 1 3.6094 -7.7476 -0.8979 34 1 2.2742 -7.5539 0.3163 35 1 6.8624 -10.0964 2.4071 36 1 3.1084 -6.0980 2.2759 37 1 4.8324 -5.6152 1.9737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325236521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:20 Heat of formation + Delta-G solvation = 57.248762 kcal Electronic energy + Delta-G solvation = -21848.271379 eV Core-core repulsion = 18436.857797 eV Total energy + Delta-G solvation = -3411.413582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.51250 -40.01568 -38.86176 -35.45056 -34.62754 -33.98215 -32.31172 -30.75558 -28.71847 -27.43567 -26.10576 -25.57648 -23.29155 -21.83425 -21.28748 -20.51217 -19.63775 -18.55863 -17.57450 -16.82305 -16.44355 -16.30664 -15.97372 -15.19239 -14.97327 -14.67710 -14.33565 -14.11605 -13.90780 -13.59505 -13.34253 -13.25523 -13.10117 -13.06727 -12.69076 -12.11862 -11.68108 -11.07263 -10.72431 -10.55770 -10.31887 -10.10814 -10.07853 -10.04072 -9.43208 -9.18441 -8.99558 -8.92898 -8.86952 -7.18803 -6.31687 -3.24130 0.99984 2.14059 2.53587 3.01197 3.08150 3.35141 3.41179 3.62620 4.15536 4.23062 4.35234 4.44305 4.55688 4.57811 4.72736 4.75243 4.81542 4.98610 5.05126 5.20055 5.44683 5.47289 5.68934 5.79716 5.96307 6.06249 6.09617 6.14112 6.22819 6.30031 6.48346 6.67328 7.04682 7.13104 7.54889 7.79699 7.90918 8.22257 8.96124 9.47982 10.30995 11.20188 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027522 B = 0.004158 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.131958 B = 6731.725858 C = 7208.572351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.428 5.428 3 C 0.205 3.795 4 N -0.496 5.496 5 C 0.040 3.960 6 C -0.088 4.088 7 C 0.598 3.402 8 O -0.545 6.545 9 N -0.713 5.713 10 C 0.109 3.891 11 C 0.072 3.928 12 O -0.516 6.516 13 C 0.140 3.860 14 N -0.616 5.616 15 C -0.300 4.300 16 H 0.084 0.916 17 C -0.024 4.024 18 N -0.934 5.934 19 Si 1.075 2.925 20 H -0.291 1.291 21 H -0.295 1.295 22 H -0.291 1.291 23 C 0.068 3.932 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.213 0.787 28 H 0.180 0.820 29 H 0.400 0.600 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.363 0.637 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.261 0.739 36 H 0.052 0.948 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.756 21.071 -6.933 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.108 5.108 3 C -0.077 4.077 4 N -0.214 5.214 5 C -0.115 4.115 6 C -0.204 4.204 7 C 0.384 3.616 8 O -0.424 6.424 9 N -0.366 5.366 10 C -0.016 4.016 11 C 0.029 3.971 12 O -0.320 6.320 13 C 0.013 3.987 14 N -0.344 5.344 15 C -0.426 4.426 16 H 0.102 0.898 17 C -0.223 4.223 18 N -0.577 5.577 19 Si 0.908 3.092 20 H -0.218 1.218 21 H -0.222 1.222 22 H -0.220 1.220 23 C -0.058 4.058 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.229 0.771 28 H 0.197 0.803 29 H 0.236 0.764 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.209 0.791 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.267 21.263 -5.796 25.222 hybrid contribution -1.079 -0.575 -1.018 1.591 sum -13.346 20.688 -6.813 25.544 Atomic orbital electron populations 1.22361 0.75216 1.06214 1.04160 1.45271 1.08376 1.05754 1.51378 1.25178 0.85577 0.93661 1.03321 1.70174 1.19000 1.12117 1.20089 1.22708 0.95225 0.91413 1.02150 1.20766 0.91610 0.88861 1.19206 1.16712 0.85459 0.83055 0.76348 1.90778 1.16733 1.83945 1.50951 1.45587 1.10940 1.06359 1.73698 1.22029 0.97857 0.78251 1.03434 1.23268 0.84920 0.95553 0.93357 1.86702 1.49762 1.27850 1.67669 1.22328 0.94142 0.88347 0.93923 1.45789 1.45854 1.12960 1.29783 1.20145 1.13757 0.90981 1.17720 0.89830 1.25689 0.94179 1.04727 0.97669 1.70913 1.36822 1.08538 1.41394 0.83661 0.75367 0.74535 0.75642 1.21832 1.22222 1.21979 1.23598 0.99289 0.88823 0.94115 0.90101 0.89418 0.87260 0.77076 0.80291 0.76400 0.90178 0.89589 0.79101 0.92299 0.92694 0.92882 0.93096 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.86 59.85 0.65 1.05 16 2 N -0.43 -3.92 3.17 -121.97 -0.39 -4.31 16 3 C 0.20 1.71 12.52 -90.56 -1.13 0.58 16 4 N -0.50 -5.48 11.20 -14.43 -0.16 -5.65 16 5 C 0.04 0.41 11.36 -17.48 -0.20 0.21 16 6 C -0.09 -0.96 6.91 -82.14 -0.57 -1.53 16 7 C 0.60 7.36 7.78 -12.81 -0.10 7.26 16 8 O -0.55 -8.02 14.77 5.20 0.08 -7.94 16 9 N -0.71 -8.00 5.32 -61.59 -0.33 -8.33 16 10 C 0.11 1.41 5.43 -4.04 -0.02 1.39 16 11 C 0.07 1.18 1.74 -89.97 -0.16 1.03 16 12 O -0.52 -8.52 13.57 -35.23 -0.48 -9.00 16 13 C 0.14 2.70 8.10 -8.51 -0.07 2.63 16 14 N -0.62 -15.15 3.69 -184.59 -0.68 -15.83 16 15 C -0.30 -8.75 11.09 -15.06 -0.17 -8.92 16 16 H 0.08 2.56 8.05 -52.49 -0.42 2.14 16 17 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 18 N -0.93 -29.77 13.70 55.49 0.76 -29.01 16 19 Si 1.07 26.90 25.12 -169.99 -4.27 22.62 16 20 H -0.29 -6.80 6.71 56.52 0.38 -6.42 16 21 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.29 -6.78 6.28 56.52 0.36 -6.42 16 23 C 0.07 1.37 5.37 -8.37 -0.04 1.33 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.11 0.94 6.16 -51.93 -0.32 0.62 16 27 H 0.21 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.18 1.38 7.50 -52.49 -0.39 0.99 16 29 H 0.40 3.66 5.93 -40.82 -0.24 3.42 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 32 H 0.36 4.15 7.20 45.56 0.33 4.48 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.26 8.21 8.73 -40.82 -0.36 7.86 16 36 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 37 H 0.06 1.30 4.02 -51.93 -0.21 1.09 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -37.90 309.39 -6.54 -44.44 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -3.83 Total: 4.12 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -1.91 Total: 4.21 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.80 Total: -63.12 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.40 Total: -16.94 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -4.27 Total: 22.62 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -37.90 -6.54 -44.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325236521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.693 kcal (2) G-P(sol) polarization free energy of solvation -37.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds