Wall clock time and date at job start Tue Mar 31 2020 01:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47216 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00164 * 2 1 3 5 5 C 1.50698 * 109.47111 * 64.99985 * 4 2 1 6 6 O 1.21273 * 120.00198 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99794 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00067 * 179.97438 * 7 5 4 9 9 C 1.50708 * 109.47417 * 180.02562 * 8 7 5 10 10 O 1.21284 * 119.99512 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00145 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00410 * 180.02562 * 11 9 8 13 13 H 1.08009 * 119.99713 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00633 * 179.97438 * 12 11 9 15 15 N 1.31412 * 119.99973 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00220 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47102 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47281 * 120.00126 * 16 14 12 19 19 H 1.48500 * 109.46863 * 239.99966 * 16 14 12 20 20 N 1.46500 * 109.46921 * 120.00461 * 2 1 3 21 21 C 1.36885 * 126.39286 * 239.99693 * 20 2 1 22 22 C 1.34665 * 106.81493 * 179.97438 * 21 20 2 23 23 N 1.34129 * 108.02445 * 0.02562 * 22 21 20 24 24 C 1.30498 * 109.25189 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.46761 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46952 * 300.00021 * 1 2 3 27 27 H 1.08998 * 109.46619 * 59.99674 * 1 2 3 28 28 H 1.09001 * 109.46437 * 185.00276 * 4 2 1 29 29 H 1.09005 * 109.46863 * 305.00098 * 4 2 1 30 30 H 0.97000 * 120.00461 * 0.02562 * 7 5 4 31 31 H 1.08995 * 109.47400 * 300.00516 * 8 7 5 32 32 H 1.09005 * 109.47003 * 60.00731 * 8 7 5 33 33 H 0.97006 * 120.00292 * 0.02562 * 11 9 8 34 34 H 0.96996 * 120.00389 * 179.97438 * 15 14 12 35 35 H 1.07999 * 126.59054 * 359.73997 * 21 20 2 36 36 H 1.08008 * 125.98738 * 179.97438 * 22 21 20 37 37 H 1.08006 * 125.64605 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0118 1.0874 -2.3633 7 7 1.9853 -0.3913 -3.7001 8 6 1.5973 0.3650 -4.8932 9 6 2.0997 -0.3454 -6.1238 10 8 2.7203 -1.3817 -6.0148 11 7 1.8593 0.1709 -7.3452 12 6 2.3158 -0.4756 -8.4647 13 1 2.8679 -1.3988 -8.3678 14 6 2.0676 0.0564 -9.7241 15 7 1.3946 1.1789 -9.8422 16 14 2.6891 -0.8248 -11.2494 17 1 3.4121 -2.0583 -10.8483 18 1 1.5385 -1.1847 -12.1165 19 1 3.6112 0.0683 -11.9958 20 7 2.0184 -0.6907 1.1961 21 6 2.8085 -0.1554 2.1774 22 6 3.0182 -1.1295 3.0833 23 7 2.3742 -2.2297 2.6664 24 6 1.7729 -1.9742 1.5367 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 3.1264 -0.7995 -1.2056 29 1 1.6053 -1.7198 -1.2952 30 1 2.4892 -1.2152 -3.7908 31 1 0.5110 0.4425 -4.9370 32 1 2.0313 1.3638 -4.8473 33 1 1.3632 0.9999 -7.4324 34 1 1.2216 1.5505 -10.7213 35 1 3.1933 0.8530 2.2155 36 1 3.6033 -1.0406 3.9869 37 1 1.1780 -2.6736 0.9680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326401321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:06 Heat of formation + Delta-G solvation = -16.626362 kcal Electronic energy + Delta-G solvation = -20832.546684 eV Core-core repulsion = 17417.929636 eV Total energy + Delta-G solvation = -3414.617048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.27769 -39.94723 -38.32131 -35.90228 -34.58072 -33.81922 -31.50056 -31.22436 -29.51068 -28.94688 -27.05688 -24.61987 -23.44564 -21.53907 -20.84787 -20.10677 -19.60777 -18.19978 -17.81659 -16.87325 -16.04385 -15.83005 -15.42943 -15.25876 -14.93314 -14.54535 -14.34977 -14.07350 -13.95483 -13.71406 -13.56852 -13.22645 -13.06661 -12.36903 -12.30802 -11.91932 -11.76539 -11.69791 -11.54648 -11.20086 -10.46858 -10.39571 -10.13818 -9.98797 -9.79771 -9.72582 -8.99418 -8.73893 -8.69046 -8.18538 -6.59163 -4.01479 1.88422 2.44229 2.54578 3.02686 3.04750 3.17380 3.22216 3.29256 3.64404 4.04605 4.14775 4.42154 4.54606 4.60710 4.73459 4.76122 4.93688 5.08609 5.11752 5.19232 5.26046 5.43345 5.52512 5.57788 5.76257 5.82287 5.92203 5.96740 6.13458 6.48487 6.56625 7.00278 7.39064 7.56624 7.83617 7.91467 8.19053 8.36259 8.96848 9.30377 9.77681 10.57626 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.047286 B = 0.002637 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.998604 B =10617.226747 C =10965.228975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.152 4.152 5 C 0.518 3.482 6 O -0.547 6.547 7 N -0.702 5.702 8 C 0.108 3.892 9 C 0.425 3.575 10 O -0.598 6.598 11 N -0.547 5.547 12 C -0.306 4.306 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.453 5.453 21 C -0.055 4.055 22 C -0.035 4.035 23 N -0.498 5.498 24 C 0.182 3.818 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.413 0.587 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -0.128 17.734 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.128 0.872 4 C -0.193 4.193 5 C 0.303 3.697 6 O -0.426 6.426 7 N -0.356 5.356 8 C -0.019 4.019 9 C 0.211 3.789 10 O -0.485 6.485 11 N -0.182 5.182 12 C -0.435 4.435 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.206 1.206 20 N -0.136 5.136 21 C -0.188 4.188 22 C -0.182 4.182 23 N -0.216 5.216 24 C -0.101 4.101 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.190 0.810 36 H 0.185 0.815 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.773 -0.652 17.946 17.974 hybrid contribution 0.273 0.581 -1.429 1.566 sum -0.500 -0.071 16.517 16.525 Atomic orbital electron populations 1.22307 0.92271 1.03110 1.04778 1.21169 0.96320 0.96887 0.81008 0.87186 1.21986 1.04115 1.01000 0.92220 1.20103 0.79661 0.85641 0.84316 1.90682 1.40615 1.24619 1.86687 1.45700 1.56778 1.28352 1.04758 1.20989 1.00935 0.95592 0.84421 1.19712 0.86761 0.87875 0.84549 1.90503 1.46328 1.25668 1.85955 1.41808 1.48261 1.23776 1.04355 1.19783 1.33005 1.07692 0.83030 0.87583 1.25341 0.96655 0.96180 0.99521 1.69615 1.39147 1.19056 1.25541 0.85749 0.78513 0.79341 0.80451 1.19094 1.20547 1.20558 1.45807 1.37862 1.11448 1.18462 1.22784 1.02342 1.01369 0.92293 1.22295 1.04842 0.89653 1.01459 1.70305 1.12476 1.28214 1.10617 1.24899 1.03838 0.85457 0.95874 0.92110 0.91904 0.88146 0.87904 0.87826 0.74918 0.89673 0.89706 0.77024 0.91556 0.81019 0.81525 0.78231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.98 37.16 0.33 -1.13 16 2 C 0.15 1.31 2.70 -67.92 -0.18 1.13 16 3 H 0.11 1.00 7.89 -51.93 -0.41 0.59 16 4 C -0.15 -1.37 5.17 -27.88 -0.14 -1.51 16 5 C 0.52 6.55 7.55 -10.99 -0.08 6.47 16 6 O -0.55 -8.23 13.97 5.56 0.08 -8.15 16 7 N -0.70 -10.14 5.53 -61.47 -0.34 -10.48 16 8 C 0.11 1.81 6.15 -5.19 -0.03 1.78 16 9 C 0.43 9.25 7.85 -10.99 -0.09 9.16 16 10 O -0.60 -14.65 15.24 5.55 0.08 -14.56 16 11 N -0.55 -13.06 5.29 -10.96 -0.06 -13.12 16 12 C -0.31 -8.08 9.68 -14.93 -0.14 -8.22 16 13 H 0.11 2.93 7.16 -52.48 -0.38 2.56 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.28 13.05 55.50 0.72 -22.55 16 16 Si 0.93 20.05 29.55 -169.99 -5.02 15.03 16 17 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 N -0.45 -4.21 2.62 -111.45 -0.29 -4.51 16 21 C -0.05 -0.50 11.54 -16.56 -0.19 -0.69 16 22 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 23 N -0.50 -6.14 11.25 -14.66 -0.16 -6.30 16 24 C 0.18 1.84 11.65 -90.38 -1.05 0.78 16 25 H 0.06 0.47 7.95 -51.93 -0.41 0.06 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 1.06 5.95 -51.93 -0.31 0.76 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.41 5.93 7.44 -40.82 -0.30 5.62 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.40 9.06 7.90 -40.82 -0.32 8.74 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.17 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.20 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -31.59 323.88 -6.65 -38.24 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -4.65 Total: 13.76 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -1.89 Total: 7.76 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.13 Total: -56.95 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.16 Total: -22.71 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.59 -6.65 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326401321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.612 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds