Wall clock time and date at job start Tue Mar 31 2020 02:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35521 * 116.99884 * 2 1 4 4 C 1.39349 * 120.02658 * 179.97438 * 3 2 1 5 5 C 1.38421 * 118.03500 * 179.97438 * 4 3 2 6 6 C 1.39974 * 117.96939 * 0.02562 * 5 4 3 7 7 C 1.47938 * 120.11394 * 179.97438 * 6 5 4 8 8 O 1.21541 * 119.99704 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99746 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99807 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46977 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47021 * 180.02562 * 11 10 9 13 13 C 1.46495 * 120.00655 * 89.99252 * 12 11 10 14 14 C 1.36943 * 119.99370 * 270.00042 * 12 11 10 15 15 H 1.07991 * 120.00309 * 23.04129 * 14 12 11 16 16 C 1.38815 * 119.99359 * 203.04492 * 14 12 11 17 17 N 1.31621 * 120.00257 * 12.93655 * 16 14 12 18 18 Si 1.86802 * 119.99711 * 192.93363 * 16 14 12 19 19 H 1.48495 * 109.47145 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47075 * 119.99901 * 18 16 14 21 21 H 1.48497 * 109.47302 * 240.00076 * 18 16 14 22 22 N 1.32753 * 119.76758 * 359.97438 * 6 5 4 23 23 N 1.28351 * 122.08908 * 0.02562 * 22 6 5 24 24 H 1.08996 * 109.46984 * 60.00273 * 1 2 3 25 25 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47345 * 300.00098 * 1 2 3 27 27 H 1.08002 * 120.98022 * 0.25358 * 4 3 2 28 28 H 1.07998 * 121.00810 * 180.02562 * 5 4 3 29 29 H 0.96995 * 120.00153 * 359.97438 * 9 7 6 30 30 H 1.08998 * 109.47386 * 300.00308 * 10 9 7 31 31 H 1.09002 * 109.46706 * 59.99949 * 10 9 7 32 32 H 1.09004 * 109.47021 * 299.99484 * 11 10 9 33 33 H 1.08991 * 109.47358 * 59.99891 * 11 10 9 34 34 H 1.09004 * 109.47150 * 95.12055 * 13 12 11 35 35 H 1.08997 * 109.47917 * 215.12546 * 13 12 11 36 36 H 1.09002 * 109.46911 * 335.12545 * 13 12 11 37 37 H 0.97001 * 119.99910 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4358 1.2811 0.0005 5 6 4.0210 2.5356 0.0000 6 6 3.1781 3.6531 -0.0006 7 6 3.7529 5.0163 -0.0006 8 8 4.9589 5.1672 0.0003 9 7 2.9392 6.0907 -0.0016 10 6 3.5083 7.4406 -0.0011 11 6 2.3773 8.4709 -0.0019 12 7 2.9464 9.8209 -0.0020 13 6 3.2318 10.4955 -1.2706 14 6 3.2119 10.4520 1.1840 15 1 3.3641 9.8719 2.0822 16 6 3.2852 11.8374 1.2317 17 7 2.8552 12.5545 0.2152 18 14 3.9942 12.6838 2.7385 19 1 4.4039 11.6609 3.7340 20 1 5.1768 13.4903 2.3428 21 1 2.9661 13.5731 3.3363 22 7 1.8612 3.4854 -0.0010 23 7 1.3222 2.3206 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 4.0399 0.3858 -0.0031 28 1 5.0950 2.6485 -0.0001 29 1 1.9767 5.9701 -0.0027 30 1 4.1220 7.5759 0.8895 31 1 4.1240 7.5756 -0.8904 32 1 1.7633 8.3359 -0.8924 33 1 1.7620 8.3357 0.8876 34 1 2.3902 11.1338 -1.5400 35 1 4.1299 11.1040 -1.1647 36 1 3.3874 9.7508 -2.0512 37 1 2.9069 13.5226 0.2484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663309857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:19 Heat of formation + Delta-G solvation = 15.059717 kcal Electronic energy + Delta-G solvation = -20831.465693 eV Core-core repulsion = 17418.222657 eV Total energy + Delta-G solvation = -3413.243036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64752 -39.59054 -38.57000 -36.10216 -34.34153 -33.55680 -32.32164 -31.21378 -28.42845 -27.84614 -25.88975 -25.53297 -24.33582 -23.14932 -20.97394 -20.62287 -19.10581 -18.26363 -17.83768 -16.76226 -16.66526 -15.74715 -15.40337 -15.05889 -14.84018 -14.65058 -14.41414 -14.40298 -13.62989 -13.55600 -13.19805 -12.51547 -12.49888 -12.33737 -12.25693 -11.96566 -11.17894 -10.90433 -10.86075 -10.69586 -10.59410 -10.34937 -10.14933 -10.07029 -9.92550 -9.86426 -9.55846 -8.77294 -8.56019 -6.78990 -5.73269 -3.21439 0.23176 0.36272 2.39851 2.54949 3.09433 3.39084 3.44063 3.46450 3.48936 3.62235 3.91300 4.38349 4.48398 4.52143 4.68226 4.80074 4.86777 5.05873 5.20763 5.36248 5.40687 5.62932 5.63654 5.81210 5.90133 6.26048 6.50038 6.52577 6.64583 6.76117 6.86592 7.37423 7.60535 7.72707 7.81555 8.12194 8.25163 8.38733 9.22158 9.84453 10.32516 11.31603 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.002864 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.818998 B = 9773.388864 C = 9918.294961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.298 6.298 3 C 0.274 3.726 4 C -0.140 4.140 5 C -0.032 4.032 6 C -0.001 4.001 7 C 0.572 3.428 8 O -0.533 6.533 9 N -0.698 5.698 10 C 0.092 3.908 11 C 0.143 3.857 12 N -0.597 5.597 13 C 0.160 3.840 14 C -0.259 4.259 15 H 0.070 0.930 16 C 0.003 3.997 17 N -0.906 5.906 18 Si 0.906 3.094 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.290 1.290 22 N -0.169 5.169 23 N -0.298 5.298 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.408 0.592 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.033 0.967 35 H 0.042 0.958 36 H -0.001 1.001 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 -24.748 -2.008 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.201 6.201 3 C 0.090 3.910 4 C -0.170 4.170 5 C -0.060 4.060 6 C -0.150 4.150 7 C 0.354 3.646 8 O -0.409 6.409 9 N -0.349 5.349 10 C -0.033 4.033 11 C 0.014 3.986 12 N -0.320 5.320 13 C 0.016 3.984 14 C -0.388 4.388 15 H 0.088 0.912 16 C -0.195 4.195 17 N -0.551 5.551 18 Si 0.736 3.264 19 H -0.202 1.202 20 H -0.216 1.216 21 H -0.217 1.217 22 N -0.018 5.018 23 N -0.157 5.157 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.181 0.819 28 H 0.188 0.812 29 H 0.243 0.757 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.285 -24.016 -2.040 24.325 hybrid contribution 1.071 -0.160 0.768 1.327 sum -2.215 -24.176 -1.272 24.310 Atomic orbital electron populations 1.23080 0.76104 1.03804 1.03285 1.86214 1.23794 1.23223 1.86876 1.21674 0.91076 0.87198 0.91031 1.21540 0.92189 0.99930 1.03310 1.22336 1.03160 0.90035 0.90494 1.22873 0.91892 0.96599 1.03633 1.17420 0.86356 0.82875 0.77941 1.90814 1.13750 1.85727 1.50644 1.45977 1.10682 1.06351 1.71851 1.22573 0.99512 0.78856 1.02400 1.20848 0.92329 0.85497 0.99939 1.43801 1.72807 1.11701 1.03666 1.20846 1.00237 0.93192 0.84140 1.19244 1.42626 0.89172 0.87775 0.91227 1.25039 1.00262 0.96585 0.97660 1.70085 1.48995 1.04967 1.31043 0.86168 0.78484 0.79463 0.82329 1.20239 1.21560 1.21698 1.73004 1.10159 1.13972 1.04620 1.73198 1.31253 0.94012 1.17189 0.91565 0.87900 0.91560 0.81884 0.81177 0.75660 0.91101 0.91777 0.93860 0.92707 0.94830 0.93920 0.98207 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.39 101.05 1.05 1.25 16 2 O -0.30 -2.56 10.48 -18.26 -0.19 -2.75 16 3 C 0.27 2.76 7.58 -16.77 -0.13 2.63 16 4 C -0.14 -1.17 10.14 -39.10 -0.40 -1.56 16 5 C -0.03 -0.32 9.72 -38.86 -0.38 -0.69 16 6 C 0.00 -0.01 6.83 -82.85 -0.57 -0.58 16 7 C 0.57 8.85 7.81 -12.29 -0.10 8.76 16 8 O -0.53 -9.71 16.39 5.33 0.09 -9.62 16 9 N -0.70 -10.72 5.55 -61.22 -0.34 -11.06 16 10 C 0.09 1.68 6.00 -4.04 -0.02 1.66 16 11 C 0.14 2.84 5.76 -4.04 -0.02 2.82 16 12 N -0.60 -14.98 2.92 -181.12 -0.53 -15.51 16 13 C 0.16 3.96 8.98 59.84 0.54 4.49 16 14 C -0.26 -7.11 9.65 -15.06 -0.15 -7.26 16 15 H 0.07 1.88 7.86 -52.49 -0.41 1.46 16 16 C 0.00 0.08 5.10 -17.43 -0.09 -0.01 16 17 N -0.91 -26.48 10.71 55.49 0.59 -25.89 16 18 Si 0.91 21.97 29.57 -169.99 -5.03 16.95 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 N -0.17 -2.21 10.73 33.32 0.36 -1.85 16 23 N -0.30 -3.58 10.40 30.55 0.32 -3.27 16 24 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 25 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 27 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 28 H 0.17 1.42 7.71 -52.49 -0.40 1.02 16 29 H 0.41 5.53 7.82 -40.82 -0.32 5.21 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.79 8.07 -51.93 -0.42 0.38 16 33 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 34 H 0.03 0.89 7.34 -51.93 -0.38 0.51 16 35 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 36 H 0.00 -0.01 8.03 -51.93 -0.42 -0.43 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -32.69 325.26 -4.91 -37.60 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.82 Total: -1.00 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -0.26 Total: 11.51 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.40 Total: -57.58 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.10 Total: -12.37 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.69 -4.91 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663309857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.657 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds