Wall clock time and date at job start Tue Mar 31 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35521 * 116.99884 * 2 1 4 4 C 1.39349 * 120.02658 * 179.97438 * 3 2 1 5 5 C 1.38421 * 118.03500 * 179.97438 * 4 3 2 6 6 C 1.39974 * 117.96939 * 0.02562 * 5 4 3 7 7 C 1.47938 * 120.11394 * 179.97438 * 6 5 4 8 8 O 1.21541 * 119.99704 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99746 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99807 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46977 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47021 * 180.02562 * 11 10 9 13 13 C 1.46495 * 120.00655 * 89.99252 * 12 11 10 14 14 C 1.36943 * 119.99370 * 270.00042 * 12 11 10 15 15 H 1.07991 * 120.00309 * 23.04129 * 14 12 11 16 16 C 1.38815 * 119.99359 * 203.04492 * 14 12 11 17 17 N 1.31621 * 120.00257 * 12.93655 * 16 14 12 18 18 Si 1.86802 * 119.99711 * 192.93363 * 16 14 12 19 19 H 1.48495 * 109.47145 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47075 * 119.99901 * 18 16 14 21 21 H 1.48497 * 109.47302 * 240.00076 * 18 16 14 22 22 N 1.32753 * 119.76758 * 359.97438 * 6 5 4 23 23 N 1.28351 * 122.08908 * 0.02562 * 22 6 5 24 24 H 1.08996 * 109.46984 * 60.00273 * 1 2 3 25 25 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47345 * 300.00098 * 1 2 3 27 27 H 1.08002 * 120.98022 * 0.25358 * 4 3 2 28 28 H 1.07998 * 121.00810 * 180.02562 * 5 4 3 29 29 H 0.96995 * 120.00153 * 359.97438 * 9 7 6 30 30 H 1.08998 * 109.47386 * 300.00308 * 10 9 7 31 31 H 1.09002 * 109.46706 * 59.99949 * 10 9 7 32 32 H 1.09004 * 109.47021 * 299.99484 * 11 10 9 33 33 H 1.08991 * 109.47358 * 59.99891 * 11 10 9 34 34 H 1.09004 * 109.47150 * 95.12055 * 13 12 11 35 35 H 1.08997 * 109.47917 * 215.12546 * 13 12 11 36 36 H 1.09002 * 109.46911 * 335.12545 * 13 12 11 37 37 H 0.97001 * 119.99910 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 3.4358 1.2811 0.0005 5 6 4.0210 2.5356 0.0000 6 6 3.1781 3.6531 -0.0006 7 6 3.7529 5.0163 -0.0006 8 8 4.9589 5.1672 0.0003 9 7 2.9392 6.0907 -0.0016 10 6 3.5083 7.4406 -0.0011 11 6 2.3773 8.4709 -0.0019 12 7 2.9464 9.8209 -0.0020 13 6 3.2318 10.4955 -1.2706 14 6 3.2119 10.4520 1.1840 15 1 3.3641 9.8719 2.0822 16 6 3.2852 11.8374 1.2317 17 7 2.8552 12.5545 0.2152 18 14 3.9942 12.6838 2.7385 19 1 4.4039 11.6609 3.7340 20 1 5.1768 13.4903 2.3428 21 1 2.9661 13.5731 3.3363 22 7 1.8612 3.4854 -0.0010 23 7 1.3222 2.3206 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 4.0399 0.3858 -0.0031 28 1 5.0950 2.6485 -0.0001 29 1 1.9767 5.9701 -0.0027 30 1 4.1220 7.5759 0.8895 31 1 4.1240 7.5756 -0.8904 32 1 1.7633 8.3359 -0.8924 33 1 1.7620 8.3357 0.8876 34 1 2.3902 11.1338 -1.5400 35 1 4.1299 11.1040 -1.1647 36 1 3.3874 9.7508 -2.0512 37 1 2.9069 13.5226 0.2484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663309857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:16:18 Heat of formation + Delta-G solvation = -10.504792 kcal Electronic energy + Delta-G solvation = -20832.574253 eV Core-core repulsion = 17418.222657 eV Total energy + Delta-G solvation = -3414.351596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.49217 -40.70466 -39.41012 -37.87220 -35.85650 -34.39234 -33.53633 -32.86836 -29.89323 -28.57872 -27.91486 -26.61290 -25.28985 -24.58815 -22.40467 -22.17345 -19.89304 -19.28355 -18.80405 -18.60875 -17.49262 -17.21309 -16.64352 -16.55241 -15.82043 -15.65954 -15.63282 -15.25972 -15.22965 -14.95442 -14.53400 -14.24847 -14.11194 -13.26848 -13.05901 -12.90287 -12.80079 -12.68473 -12.61834 -12.48796 -12.15111 -11.96820 -11.79076 -11.47440 -11.35908 -10.92713 -10.66626 -10.40100 -10.10289 -8.83539 -7.84291 -5.34805 -0.64711 -0.39754 1.46569 1.48493 1.50323 1.58790 1.70172 1.94336 2.46776 2.51539 2.74218 3.09441 3.29792 3.56517 3.74206 3.79770 3.85950 4.21887 4.24364 4.28181 4.38888 4.43297 4.66212 4.70454 4.74851 4.83003 4.90337 5.04240 5.09335 5.28158 5.42220 5.63483 5.71010 5.83146 6.31526 6.37430 6.99474 7.13520 7.29302 7.83326 8.26412 9.19125 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034271 B = 0.002864 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.818998 B = 9773.388864 C = 9918.294961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.296 6.296 3 C 0.271 3.729 4 C -0.121 4.121 5 C -0.032 4.032 6 C -0.016 4.016 7 C 0.575 3.425 8 O -0.564 6.564 9 N -0.693 5.693 10 C 0.114 3.886 11 C 0.145 3.855 12 N -0.616 5.616 13 C 0.173 3.827 14 C -0.266 4.266 15 H 0.071 0.929 16 C -0.052 4.052 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.291 1.291 21 H -0.290 1.290 22 N -0.185 5.185 23 N -0.316 5.316 24 H 0.062 0.938 25 H 0.134 0.866 26 H 0.062 0.938 27 H 0.202 0.798 28 H 0.186 0.814 29 H 0.418 0.582 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.010 0.990 35 H 0.015 0.985 36 H 0.033 0.967 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.724 -27.350 -1.627 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.199 6.199 3 C 0.087 3.913 4 C -0.150 4.150 5 C -0.059 4.059 6 C -0.165 4.165 7 C 0.359 3.641 8 O -0.442 6.442 9 N -0.344 5.344 10 C -0.013 4.013 11 C 0.018 3.982 12 N -0.339 5.339 13 C 0.028 3.972 14 C -0.396 4.396 15 H 0.089 0.911 16 C -0.247 4.247 17 N -0.583 5.583 18 Si 0.797 3.203 19 H -0.192 1.192 20 H -0.218 1.218 21 H -0.217 1.217 22 N -0.034 5.034 23 N -0.175 5.175 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.081 0.919 27 H 0.220 0.780 28 H 0.203 0.797 29 H 0.255 0.745 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.051 0.949 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.302 -26.679 -1.655 26.934 hybrid contribution 0.987 0.452 0.623 1.252 sum -2.315 -26.227 -1.032 26.349 Atomic orbital electron populations 1.23325 0.74808 1.05779 1.02937 1.86240 1.25075 1.22240 1.86378 1.21959 0.91962 0.87168 0.90186 1.21920 0.91683 1.00560 1.00811 1.22515 1.03634 0.89718 0.90060 1.22540 0.92487 0.95691 1.05772 1.17734 0.85881 0.83772 0.76708 1.90793 1.15041 1.86401 1.51965 1.45789 1.11240 1.05362 1.72050 1.22018 0.98247 0.80054 1.00935 1.20944 0.92787 0.83414 1.01062 1.44031 1.73405 1.13392 1.03057 1.20610 0.97997 0.93486 0.85092 1.19545 1.41795 0.89566 0.88677 0.91099 1.25803 1.01130 0.97335 1.00444 1.70234 1.50402 1.04831 1.32844 0.85180 0.77412 0.78335 0.79360 1.19196 1.21801 1.21668 1.72935 1.10280 1.14846 1.05298 1.73116 1.31815 0.94326 1.18236 0.91881 0.84821 0.91949 0.78045 0.79714 0.74490 0.93259 0.92661 0.91800 0.92385 0.97119 0.96596 0.94895 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.39 113.37 1.18 1.44 16 2 O -0.30 -4.30 10.48 -88.24 -0.92 -5.22 16 3 C 0.27 4.83 7.58 84.83 0.64 5.47 16 4 C -0.12 -1.63 10.14 22.58 0.23 -1.40 16 5 C -0.03 -0.56 9.72 22.73 0.22 -0.34 16 6 C -0.02 -0.38 6.83 42.00 0.29 -0.09 16 7 C 0.58 17.48 7.81 86.81 0.68 18.16 16 8 O -0.56 -20.35 16.39 -3.84 -0.06 -20.41 16 9 N -0.69 -20.88 5.55 -465.88 -2.58 -23.46 16 10 C 0.11 4.13 6.00 86.38 0.52 4.64 16 11 C 0.15 5.68 5.76 86.38 0.50 6.18 16 12 N -0.62 -30.92 2.92 -726.95 -2.12 -33.05 16 13 C 0.17 8.60 8.98 127.77 1.15 9.75 16 14 C -0.27 -14.67 9.65 84.03 0.81 -13.86 16 15 H 0.07 3.81 7.86 -2.92 -0.02 3.79 16 16 C -0.05 -2.93 5.10 84.86 0.43 -2.50 16 17 N -0.94 -55.69 10.71 21.65 0.23 -55.46 16 18 Si 0.97 45.53 29.57 68.60 2.03 47.56 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 N -0.19 -4.66 10.73 -48.50 -0.52 -5.18 16 23 N -0.32 -7.16 10.40 -170.01 -1.77 -8.93 16 24 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 25 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.69 8.11 -2.38 -0.02 0.67 16 27 H 0.20 1.10 8.06 -2.91 -0.02 1.08 16 28 H 0.19 2.67 7.71 -2.91 -0.02 2.65 16 29 H 0.42 10.98 7.82 -92.71 -0.73 10.25 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 34 H 0.01 0.57 7.34 -2.38 -0.02 0.55 16 35 H 0.02 0.84 7.34 -2.39 -0.02 0.82 16 36 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 37 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -70.66 325.26 1.28 -69.38 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.37 Total: 7.32 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 6.64 Total: 27.46 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -6.77 Total: -126.08 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.99 Total: -25.63 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.66 1.28 -69.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663309857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.874 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds