Wall clock time and date at job start Tue Mar 31 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46975 * 2 1 4 4 C 1.52998 * 109.47168 * 239.99859 * 2 1 3 5 5 N 1.46497 * 109.47230 * 184.99895 * 4 2 1 6 6 C 1.36937 * 120.00196 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99903 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99960 * 180.02562 * 6 5 4 9 9 N 1.31613 * 119.99863 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99859 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47174 * 89.99490 * 10 8 6 12 12 H 1.48491 * 109.47304 * 209.99925 * 10 8 6 13 13 H 1.48505 * 109.47149 * 329.99917 * 10 8 6 14 14 N 1.46499 * 109.47077 * 119.99621 * 2 1 3 15 15 C 1.46505 * 120.00062 * 60.00207 * 14 2 1 16 16 C 1.34775 * 120.00105 * 240.00021 * 14 2 1 17 17 O 1.21544 * 119.99961 * 2.20676 * 16 14 2 18 18 C 1.47935 * 120.00303 * 182.21031 * 16 14 2 19 19 C 1.39976 * 120.12059 * 172.85388 * 18 16 14 20 20 C 1.38420 * 117.97362 * 179.97438 * 19 18 16 21 21 C 1.39344 * 118.03165 * 0.02562 * 20 19 18 22 22 O 1.35521 * 120.02532 * 179.97438 * 21 20 19 23 23 N 1.32676 * 119.94607 * 359.97438 * 21 20 19 24 24 N 1.28350 * 122.20086 * 0.02562 * 23 21 20 25 25 H 1.09004 * 109.46993 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46991 * 299.99704 * 1 2 3 27 27 H 1.08997 * 109.47236 * 60.00492 * 1 2 3 28 28 H 1.09001 * 109.47036 * 304.99971 * 4 2 1 29 29 H 1.09001 * 109.47330 * 64.99413 * 4 2 1 30 30 H 0.97002 * 119.99943 * 0.02562 * 5 4 2 31 31 H 0.97004 * 119.99608 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.46869 * 263.80115 * 15 14 2 33 33 H 1.09002 * 109.46801 * 23.80053 * 15 14 2 34 34 H 1.09003 * 109.46734 * 143.80155 * 15 14 2 35 35 H 1.08003 * 121.01273 * 0.02562 * 19 18 16 36 36 H 1.07991 * 120.98378 * 179.72372 * 20 19 18 37 37 H 0.96708 * 114.00299 * 89.99818 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1839 -1.4379 -2.2072 7 1 3.6469 -1.8431 -3.0520 8 6 5.5673 -1.5380 -2.1513 9 7 6.2217 -1.0446 -1.1215 10 14 6.5001 -2.3728 -3.5378 11 1 6.8627 -1.3658 -4.5671 12 1 7.7352 -2.9962 -2.9984 13 1 5.6437 -3.4202 -4.1502 14 7 2.0183 -0.6905 1.1962 15 6 1.6645 -2.0931 1.4281 16 6 2.7932 -0.0355 2.0833 17 8 3.0538 1.1392 1.9116 18 6 3.3266 -0.7462 3.2660 19 6 4.2499 -0.1149 4.1076 20 6 4.7195 -0.8207 5.2018 21 6 4.2452 -2.1161 5.3982 22 8 4.6784 -2.8438 6.4562 23 7 3.3691 -2.6365 4.5486 24 7 2.9313 -1.9852 3.5330 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5137 -0.8900 28 1 1.6054 -1.7198 -1.2951 29 1 1.7516 -0.1584 -2.1370 30 1 3.9824 -0.4628 -0.4316 31 1 7.1884 -1.1149 -1.0823 32 1 0.8007 -2.1451 2.0909 33 1 1.4223 -2.5687 0.4777 34 1 2.5072 -2.6091 1.8883 35 1 4.5849 0.8926 3.9098 36 1 5.4361 -0.3823 5.8804 37 1 4.1408 -2.7379 7.2531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715322862.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:11 Heat of formation + Delta-G solvation = 22.087455 kcal Electronic energy + Delta-G solvation = -22228.674028 eV Core-core repulsion = 18815.735738 eV Total energy + Delta-G solvation = -3412.938291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39138 -39.54271 -37.74862 -36.46839 -34.05795 -33.27570 -32.45720 -30.98738 -29.93315 -26.67400 -25.71493 -25.20453 -24.58642 -22.67236 -21.54642 -19.44883 -19.16474 -18.16876 -17.11505 -17.04837 -16.29330 -16.04250 -15.39684 -14.83960 -14.44551 -14.22765 -13.80629 -13.60691 -13.58151 -13.18444 -12.76467 -12.59239 -12.45150 -12.27825 -12.21523 -11.90790 -11.48017 -11.09072 -10.83767 -10.73675 -10.47539 -10.40371 -10.03499 -9.85963 -9.69780 -9.67851 -9.49122 -8.85018 -8.26694 -6.88293 -5.71957 -3.00930 0.30724 0.60792 2.65959 3.06034 3.20116 3.45937 3.50499 3.52500 3.63786 3.96818 4.41400 4.52911 4.62053 4.74560 4.80407 5.21223 5.43599 5.46046 5.55375 5.62159 5.66120 5.71478 5.80482 5.96475 6.02984 6.11486 6.20405 6.37377 6.48871 6.53405 6.74773 6.96651 7.04168 7.62548 7.72451 8.26660 8.45219 8.45809 9.57287 10.15410 10.50398 11.50525 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.005807 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.362871 B = 4820.985778 C = 5979.909239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.571 5.571 15 C 0.077 3.923 16 C 0.575 3.425 17 O -0.532 6.532 18 C 0.028 3.972 19 C -0.044 4.044 20 C -0.142 4.142 21 C 0.268 3.732 22 O -0.473 6.473 23 N -0.264 5.264 24 N -0.174 5.174 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.385 0.615 31 H 0.254 0.746 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 0.737 14.829 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.120 0.880 4 C 0.014 3.986 5 N -0.373 5.373 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.579 5.579 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.208 1.208 14 N -0.301 5.301 15 C -0.066 4.066 16 C 0.360 3.640 17 O -0.408 6.408 18 C -0.118 4.118 19 C -0.073 4.073 20 C -0.172 4.172 21 C 0.083 3.917 22 O -0.279 6.279 23 N -0.117 5.117 24 N -0.023 5.023 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.219 0.781 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.185 0.815 36 H 0.179 0.821 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -9.593 -0.215 13.847 16.847 hybrid contribution 1.487 0.760 0.247 1.688 sum -8.106 0.545 14.094 16.268 Atomic orbital electron populations 1.22049 0.94727 1.02346 1.02110 1.21525 0.93633 0.98499 0.84326 0.88001 1.21029 0.87100 0.96956 0.93466 1.42292 0.99691 1.70198 1.25100 1.19214 0.89421 1.29364 0.99038 0.91184 1.24741 0.96455 1.01691 0.98044 1.69682 1.07086 1.50964 1.30215 0.86194 0.79515 0.79005 0.81498 1.21740 1.21868 1.20774 1.47587 1.48067 1.13010 1.21430 1.22268 1.02076 0.80708 1.01515 1.17397 0.78960 0.85968 0.81684 1.90793 1.59190 1.15200 1.75591 1.22974 0.97734 0.93525 0.97589 1.22411 0.92061 1.02087 0.90720 1.22527 1.01278 0.93726 0.99620 1.21016 0.91766 0.88108 0.90768 1.84762 1.53841 1.68486 1.20787 1.73101 1.09192 1.29122 1.00259 1.73770 1.17402 1.04185 1.06990 0.92150 0.92595 0.91233 0.95876 0.95138 0.78131 0.93635 0.92816 0.91025 0.88187 0.81504 0.82118 0.73598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.19 37.16 0.34 -1.65 16 2 C 0.12 2.13 2.79 -67.93 -0.19 1.94 16 3 H 0.10 1.95 6.90 -51.93 -0.36 1.59 16 4 C 0.14 2.91 5.52 -4.04 -0.02 2.89 16 5 N -0.73 -19.10 5.43 -59.91 -0.33 -19.42 16 6 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 10 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 N -0.57 -10.05 2.24 -175.01 -0.39 -10.45 16 15 C 0.08 1.22 8.35 59.85 0.50 1.72 16 16 C 0.58 10.74 7.36 -12.29 -0.09 10.65 16 17 O -0.53 -11.05 15.74 5.33 0.08 -10.97 16 18 C 0.03 0.46 6.70 -82.84 -0.55 -0.10 16 19 C -0.04 -0.59 9.71 -38.86 -0.38 -0.97 16 20 C -0.14 -1.53 10.14 -39.10 -0.40 -1.93 16 21 C 0.27 3.28 7.85 -16.78 -0.13 3.15 16 22 O -0.47 -4.51 13.56 -18.26 -0.25 -4.76 16 23 N -0.26 -3.97 11.54 30.54 0.35 -3.62 16 24 N -0.17 -2.80 7.24 33.32 0.24 -2.56 16 25 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.02 0.46 6.87 -51.93 -0.36 0.11 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.38 10.92 7.06 -40.82 -0.29 10.63 16 31 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.12 6.54 -51.93 -0.34 0.78 16 34 H 0.10 1.75 5.26 -52.14 -0.27 1.48 16 35 H 0.17 2.04 7.73 -52.48 -0.41 1.63 16 36 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.41 1.48 9.06 45.56 0.41 1.89 16 LS Contribution 316.65 15.07 4.77 4.77 Total: -1.00 -35.89 316.65 -4.65 -40.55 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -3.67 Total: 8.66 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -1.17 Total: 8.22 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: 0.60 Total: -64.42 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.16 Total: -15.72 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.89 -4.65 -40.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715322862.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.633 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds