Wall clock time and date at job start Tue Mar 31 2020 01:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47448 * 2 1 4 4 C 1.53005 * 109.47374 * 120.00322 * 2 1 3 5 5 N 1.46498 * 109.47152 * 174.99919 * 4 2 1 6 6 C 1.36940 * 119.99886 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99881 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99894 * 180.02562 * 6 5 4 9 9 N 1.31613 * 120.00029 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99723 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46728 * 90.00002 * 10 8 6 12 12 H 1.48502 * 109.46808 * 209.99751 * 10 8 6 13 13 H 1.48500 * 109.47390 * 329.99872 * 10 8 6 14 14 N 1.46504 * 109.47135 * 239.99872 * 2 1 3 15 15 C 1.46499 * 120.00302 * 300.00642 * 14 2 1 16 16 C 1.34785 * 119.99752 * 119.99672 * 14 2 1 17 17 O 1.21543 * 119.99573 * 1.60843 * 16 14 2 18 18 C 1.47935 * 120.00019 * 181.60630 * 16 14 2 19 19 C 1.39975 * 120.11745 * 172.80098 * 18 16 14 20 20 C 1.38414 * 117.96742 * 179.78400 * 19 18 16 21 21 C 1.39345 * 118.03752 * 0.48016 * 20 19 18 22 22 O 1.35517 * 120.02693 * 179.77032 * 21 20 19 23 23 N 1.32672 * 119.94397 * 359.75436 * 21 20 19 24 24 N 1.28352 * 122.19530 * 359.97438 * 23 21 20 25 25 H 1.08997 * 109.46777 * 299.99707 * 1 2 3 26 26 H 1.08999 * 109.46741 * 59.99818 * 1 2 3 27 27 H 1.08998 * 109.46795 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46945 * 294.99878 * 4 2 1 29 29 H 1.09003 * 109.46624 * 54.99703 * 4 2 1 30 30 H 0.96996 * 120.00170 * 359.97438 * 5 4 2 31 31 H 0.97005 * 120.00147 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.46359 * 263.91101 * 15 14 2 33 33 H 1.09000 * 109.47401 * 143.91108 * 15 14 2 34 34 H 1.08990 * 109.47149 * 23.90937 * 15 14 2 35 35 H 1.08004 * 121.01034 * 0.02562 * 19 18 16 36 36 H 1.08005 * 120.97948 * 180.22656 * 20 19 18 37 37 H 0.96703 * 114.00124 * 269.97795 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1839 -1.4390 2.2066 7 1 3.6468 -1.8442 3.0515 8 6 5.5673 -1.5381 2.1512 9 7 6.2218 -1.0438 1.1219 10 14 6.5001 -2.3730 3.5377 11 1 6.6327 -3.8224 3.2425 12 1 7.8504 -1.7674 3.6609 13 1 5.7588 -2.1931 4.8118 14 7 2.0183 -0.6907 -1.1962 15 6 1.6643 -2.0932 -1.4281 16 6 2.7932 -0.0356 -2.0834 17 8 3.1108 1.1192 -1.8765 18 6 3.2570 -0.7221 -3.3090 19 6 3.9331 -0.0048 -4.3028 20 6 4.3512 -0.6924 -5.4289 21 6 4.0647 -2.0537 -5.5091 22 8 4.4512 -2.7652 -6.5958 23 7 3.4136 -2.6528 -4.5205 24 7 3.0290 -2.0197 -3.4724 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -0.1584 2.1369 29 1 1.6054 -1.7199 1.2950 30 1 3.9824 -0.4628 0.4315 31 1 7.1886 -1.1134 1.0830 32 1 2.4681 -2.7351 -1.0674 33 1 1.5178 -2.2593 -2.4954 34 1 0.7439 -2.3287 -0.8941 35 1 4.1260 1.0521 -4.1923 36 1 4.8802 -0.1878 -6.2239 37 1 3.7947 -2.7870 -7.3055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715323003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:15 Heat of formation + Delta-G solvation = 22.970398 kcal Electronic energy + Delta-G solvation = -22208.201906 eV Core-core repulsion = 18795.301903 eV Total energy + Delta-G solvation = -3412.900003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.132 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.40794 -39.54192 -37.76268 -36.45608 -34.04474 -33.29816 -32.45481 -30.98400 -29.92201 -26.68906 -25.71312 -25.19118 -24.60533 -22.64778 -21.54345 -19.44966 -19.17760 -18.17562 -17.10675 -17.02988 -16.41568 -16.00947 -15.30773 -14.80468 -14.46761 -14.22075 -13.85122 -13.60483 -13.57652 -13.15641 -12.72523 -12.67931 -12.47586 -12.32944 -12.22070 -11.85240 -11.44585 -11.06266 -10.79954 -10.73991 -10.46066 -10.42490 -10.01251 -9.83248 -9.72891 -9.65446 -9.52972 -8.82590 -8.24402 -6.85195 -5.68677 -2.97816 0.29119 0.58391 2.64760 3.05766 3.20710 3.47862 3.52208 3.54464 3.60207 3.96987 4.39199 4.50180 4.64130 4.72905 4.77860 5.19592 5.41086 5.42938 5.54439 5.63440 5.64458 5.64930 5.76233 6.02626 6.07451 6.14874 6.22427 6.40486 6.46893 6.52582 6.76441 6.97471 7.02622 7.62817 7.74956 8.27095 8.45077 8.48834 9.60330 10.18951 10.53887 11.53692 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.005635 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.564644 B = 4967.562071 C = 6058.900346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 H 0.102 0.898 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.930 5.930 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.571 5.571 15 C 0.075 3.925 16 C 0.574 3.426 17 O -0.530 6.530 18 C 0.029 3.971 19 C -0.047 4.047 20 C -0.142 4.142 21 C 0.267 3.733 22 O -0.473 6.473 23 N -0.263 5.263 24 N -0.171 5.171 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.023 0.977 30 H 0.385 0.615 31 H 0.254 0.746 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 0.973 -15.497 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.120 0.880 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.579 5.579 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.302 5.302 15 C -0.068 4.068 16 C 0.359 3.641 17 O -0.406 6.406 18 C -0.118 4.118 19 C -0.076 4.076 20 C -0.171 4.171 21 C 0.083 3.917 22 O -0.279 6.279 23 N -0.115 5.115 24 N -0.021 5.021 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.220 0.780 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.185 0.815 36 H 0.179 0.821 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -10.786 0.018 -14.379 17.975 hybrid contribution 1.189 0.761 -0.364 1.458 sum -9.597 0.780 -14.744 17.609 Atomic orbital electron populations 1.22069 0.94826 1.02323 1.02156 1.21524 0.93498 0.98526 0.84451 0.88006 1.21009 0.87153 0.96895 0.93355 1.42293 0.99681 1.70119 1.25175 1.19208 0.89408 1.29345 0.99089 0.91221 1.24742 0.96457 1.01667 0.98050 1.69687 1.07077 1.50801 1.30302 0.86204 0.79422 0.79025 0.81615 1.21795 1.21845 1.20767 1.47586 1.48342 1.12970 1.21264 1.22300 1.00892 0.80607 1.02956 1.17386 0.79111 0.85630 0.82001 1.90802 1.56874 1.16647 1.76234 1.23000 0.98859 0.92992 0.96936 1.22402 0.91615 1.03053 0.90526 1.22522 1.00515 0.93846 1.00255 1.21027 0.92734 0.88143 0.89843 1.84763 1.44187 1.73688 1.25241 1.73125 1.09132 1.30994 0.98277 1.73798 1.11136 1.06030 1.11104 0.91161 0.92599 0.92095 0.95266 0.95957 0.78043 0.93642 0.91263 0.88775 0.91786 0.81549 0.82138 0.73596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.18 37.16 0.34 -1.63 16 2 C 0.12 2.13 2.79 -67.93 -0.19 1.94 16 3 H 0.10 1.95 6.90 -51.93 -0.36 1.59 16 4 C 0.14 2.97 5.56 -4.04 -0.02 2.95 16 5 N -0.73 -19.34 5.43 -59.91 -0.33 -19.66 16 6 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -29.51 13.06 55.49 0.72 -28.79 16 10 Si 0.91 23.20 29.55 -169.99 -5.02 18.17 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 N -0.57 -10.03 2.24 -175.01 -0.39 -10.42 16 15 C 0.08 1.18 8.43 59.85 0.50 1.68 16 16 C 0.57 10.70 7.36 -12.28 -0.09 10.61 16 17 O -0.53 -11.08 15.74 5.33 0.08 -11.00 16 18 C 0.03 0.46 6.69 -82.85 -0.55 -0.09 16 19 C -0.05 -0.61 9.71 -38.87 -0.38 -0.98 16 20 C -0.14 -1.47 10.14 -39.10 -0.40 -1.87 16 21 C 0.27 3.21 7.85 -16.78 -0.13 3.08 16 22 O -0.47 -4.42 13.56 -18.24 -0.25 -4.67 16 23 N -0.26 -3.96 11.54 30.54 0.35 -3.60 16 24 N -0.17 -2.78 7.25 33.32 0.24 -2.53 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.02 0.45 7.84 -51.93 -0.41 0.05 16 30 H 0.39 11.11 7.06 -40.82 -0.29 10.82 16 31 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.09 1.37 5.29 -51.99 -0.27 1.09 16 34 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 35 H 0.17 1.90 7.73 -52.48 -0.41 1.49 16 36 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.41 1.40 9.06 45.56 0.41 1.81 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -36.67 316.67 -4.64 -41.31 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.66 Total: 8.30 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.16 Total: 8.11 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: 0.60 Total: -65.01 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.16 Total: -15.67 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.67 -4.64 -41.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715323003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.285 kcal (2) G-P(sol) polarization free energy of solvation -36.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds