Wall clock time and date at job start Tue Mar 31 2020 01:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48506 * 109.46919 * 85.02619 * 3 2 1 5 5 H 1.48497 * 109.47198 * 205.02516 * 3 2 1 6 6 H 1.48501 * 109.47241 * 325.03068 * 3 2 1 7 7 C 1.39918 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 193.78144 * 7 2 1 9 9 C 1.41006 * 119.99429 * 13.77707 * 7 2 1 10 10 C 1.40740 * 120.31452 * 25.90482 * 9 7 2 11 11 C 1.36422 * 119.95361 * 179.97438 * 10 9 7 12 12 C 1.38929 * 120.61044 * 0.02562 * 11 10 9 13 13 C 1.38120 * 120.62937 * 359.97438 * 12 11 10 14 14 C 1.38805 * 120.02467 * 359.70882 * 13 12 11 15 15 N 1.38678 * 120.29991 * 180.28021 * 14 13 12 16 16 C 1.39625 * 120.00099 * 254.59322 * 15 14 13 17 17 C 1.38996 * 120.49605 * 5.48900 * 16 15 14 18 18 N 1.31774 * 120.64146 * 179.72368 * 17 16 15 19 19 C 1.31885 * 121.80809 * 0.53579 * 18 17 16 20 20 C 1.38251 * 120.94340 * 359.74856 * 19 18 17 21 21 C 1.50706 * 120.37554 * 179.97438 * 20 19 18 22 22 C 1.53001 * 117.49968 * 8.63978 * 21 20 19 23 23 C 1.52996 * 60.00132 * 252.51254 * 22 21 20 24 24 C 1.38512 * 119.24792 * 359.97438 * 20 19 18 25 25 H 0.96996 * 119.99980 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.02385 * 359.97438 * 10 9 7 27 27 H 1.08002 * 119.70055 * 179.97438 * 11 10 9 28 28 H 1.08002 * 119.68799 * 179.97438 * 12 11 10 29 29 H 1.08003 * 119.98671 * 179.97438 * 13 12 11 30 30 H 0.96997 * 119.99920 * 74.60160 * 15 14 13 31 31 H 1.08000 * 119.67840 * 359.97438 * 17 16 15 32 32 H 1.08007 * 119.53000 * 179.73178 * 19 18 17 33 33 H 1.09003 * 115.54981 * 154.35330 * 21 20 19 34 34 H 1.08998 * 117.50011 * 0.02562 * 22 21 20 35 35 H 1.08998 * 117.49395 * 145.02487 * 22 21 20 36 36 H 1.08997 * 117.50508 * 252.51044 * 23 22 21 37 37 H 1.09008 * 117.49881 * 107.48514 * 23 22 21 38 38 H 1.08006 * 120.82602 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3853 2.1071 1.3949 5 1 3.5890 1.4121 -0.5922 6 1 1.4968 2.6201 -0.8024 7 6 2.0085 -1.2117 -0.0005 8 1 3.0651 -1.2252 0.2222 9 6 1.3338 -2.4151 -0.2919 10 6 0.1706 -2.4035 -1.0840 11 6 -0.4760 -3.5722 -1.3618 12 6 0.0024 -4.7798 -0.8690 13 6 1.1417 -4.8198 -0.0891 14 6 1.8240 -3.6471 0.2042 15 7 2.9718 -3.6813 0.9818 16 6 2.9305 -3.2437 2.3071 17 6 1.7236 -2.8789 2.8922 18 7 1.6806 -2.4706 4.1444 19 6 2.7688 -2.3814 4.8842 20 6 4.0069 -2.7209 4.3713 21 6 5.2422 -2.6135 5.2279 22 6 5.0463 -2.3175 6.7162 23 6 5.5966 -1.2340 5.7867 24 6 4.0992 -3.1607 3.0611 25 1 -0.4850 0.8400 0.0004 26 1 -0.2099 -1.4700 -1.4718 27 1 -1.3686 -3.5585 -1.9698 28 1 -0.5215 -5.6961 -1.0977 29 1 1.5042 -5.7643 0.2889 30 1 3.8032 -4.0092 0.6050 31 1 0.8117 -2.9346 2.3163 32 1 2.6916 -2.0380 5.9053 33 1 6.0661 -3.2705 4.9493 34 1 4.0240 -2.2008 7.0758 35 1 5.7413 -2.7800 7.4170 36 1 6.6537 -0.9836 5.8760 37 1 4.9364 -0.4041 5.5347 38 1 5.0535 -3.4329 2.6346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176288521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:37 Heat of formation + Delta-G solvation = 80.935992 kcal Electronic energy + Delta-G solvation = -21042.957731 eV Core-core repulsion = 18043.420567 eV Total energy + Delta-G solvation = -2999.537163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.127 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.87258 -38.10646 -36.82220 -34.69056 -33.74935 -31.37761 -29.68326 -29.48288 -27.48956 -25.23457 -23.74385 -22.95758 -22.16537 -21.06844 -20.86414 -19.56259 -17.39539 -16.77563 -16.60907 -15.74484 -15.47186 -15.11842 -14.59047 -14.24094 -13.96620 -13.89423 -13.10090 -12.78491 -12.56733 -12.40750 -12.00953 -11.71865 -11.63659 -11.31948 -11.24366 -11.16374 -10.98197 -10.80217 -10.53172 -10.47065 -10.32124 -9.74608 -9.52301 -9.28703 -8.78792 -8.51216 -7.57890 -7.52382 -6.91439 -6.61521 -4.47063 1.82128 2.13074 2.66403 2.85114 3.02600 3.06158 3.16505 3.86925 3.90617 4.24432 4.55791 4.63255 4.76725 4.93883 5.09498 5.30467 5.32561 5.51537 5.53007 5.65930 5.72026 5.83340 6.03266 6.12323 6.12659 6.24460 6.26891 6.33019 6.54026 6.81096 6.84301 6.95925 7.06129 7.19297 7.29097 7.42144 7.64048 7.82845 7.99167 8.13302 8.24207 8.39623 8.63025 8.75874 8.83839 8.95465 10.07635 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.006475 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.312454 B = 4323.261110 C = 5585.256935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.269 1.269 5 H -0.261 1.261 6 H -0.274 1.274 7 C -0.439 4.439 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.154 4.154 11 C -0.103 4.103 12 C -0.239 4.239 13 C -0.084 4.084 14 C -0.012 4.012 15 N -0.655 5.655 16 C 0.198 3.802 17 C 0.060 3.940 18 N -0.449 5.449 19 C 0.013 3.987 20 C -0.068 4.068 21 C -0.106 4.106 22 C -0.178 4.178 23 C -0.171 4.171 24 C -0.170 4.170 25 H 0.282 0.718 26 H 0.123 0.877 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.390 0.610 31 H 0.156 0.844 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.628 -2.403 5.902 9.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.185 1.185 6 H -0.199 1.199 7 C -0.468 4.468 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.173 4.173 11 C -0.121 4.121 12 C -0.259 4.259 13 C -0.104 4.104 14 C -0.106 4.106 15 N -0.275 5.275 16 C 0.090 3.910 17 C -0.105 4.105 18 N -0.156 5.156 19 C -0.144 4.144 20 C -0.070 4.070 21 C -0.125 4.125 22 C -0.214 4.214 23 C -0.208 4.208 24 C -0.201 4.201 25 H 0.093 0.907 26 H 0.141 0.859 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.225 0.775 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.447 -1.986 6.183 9.151 hybrid contribution 1.486 0.473 -0.569 1.660 sum 7.934 -1.513 5.614 9.836 Atomic orbital electron populations 1.69806 1.07446 1.29395 1.34337 1.25914 0.94776 1.01377 0.92163 0.86330 0.80685 0.80800 0.79266 1.19402 1.18476 1.19885 1.19401 0.96731 0.90457 1.40166 0.90534 1.17790 0.91533 0.91490 0.88176 1.21099 0.98224 0.97128 1.00878 1.20500 0.98534 0.93332 0.99755 1.20222 1.00367 0.96520 1.08748 1.20711 0.95160 0.95885 0.98641 1.17311 0.94403 0.93652 1.05208 1.41108 1.10624 1.68306 1.07475 1.18938 0.94230 0.92193 0.85602 1.22430 0.97054 1.00162 0.90807 1.67498 1.31413 1.10603 1.06082 1.22093 0.87759 1.04832 0.99735 1.19661 0.94263 0.99446 0.93654 1.20881 0.97468 0.99839 0.94309 1.23034 1.02700 1.03355 0.92360 1.23012 1.01627 0.92473 1.03728 1.20641 0.96899 1.08246 0.94314 0.90675 0.85912 0.89329 0.89283 0.89227 0.77506 0.82650 0.84395 0.87344 0.88224 0.88732 0.88750 0.88499 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.68 10.81 55.55 0.60 -19.08 16 2 C 0.08 1.87 5.21 -17.33 -0.09 1.78 16 3 Si 0.90 18.82 29.58 -169.99 -5.03 13.79 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 5 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.44 -11.04 8.01 -37.90 -0.30 -11.35 16 8 H 0.08 1.93 7.59 -52.49 -0.40 1.53 16 9 C 0.11 2.83 5.05 -106.63 -0.54 2.29 16 10 C -0.15 -3.77 8.62 -39.29 -0.34 -4.11 16 11 C -0.10 -2.29 9.96 -39.98 -0.40 -2.69 16 12 C -0.24 -5.08 10.03 -39.37 -0.40 -5.47 16 13 C -0.08 -1.79 9.96 -39.41 -0.39 -2.19 16 14 C -0.01 -0.27 4.64 -83.28 -0.39 -0.66 16 15 N -0.66 -12.96 4.73 -7.94 -0.04 -13.00 16 16 C 0.20 3.98 6.10 -83.62 -0.51 3.47 16 17 C 0.06 1.33 10.13 -17.30 -0.18 1.16 16 18 N -0.45 -9.58 10.35 -13.06 -0.14 -9.72 16 19 C 0.01 0.24 10.47 -17.52 -0.18 0.06 16 20 C -0.07 -1.11 5.62 -104.51 -0.59 -1.70 16 21 C -0.11 -1.35 6.06 -91.77 -0.56 -1.91 16 22 C -0.18 -1.91 9.87 -26.73 -0.26 -2.17 16 23 C -0.17 -1.95 10.17 -26.73 -0.27 -2.23 16 24 C -0.17 -2.97 9.76 -39.07 -0.38 -3.35 16 25 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 26 H 0.12 3.13 6.10 -52.48 -0.32 2.81 16 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.39 6.68 8.85 -40.82 -0.36 6.32 16 31 H 0.16 3.86 6.75 -52.49 -0.35 3.50 16 32 H 0.14 2.14 6.03 -52.48 -0.32 1.82 16 33 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.10 1.08 6.20 -51.93 -0.32 0.76 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 38 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -26.77 321.09 -10.12 -36.90 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -4.59 Total: 15.34 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -5.77 Total: -29.06 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.43 Total: -41.80 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.77 -10.12 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176288521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.831 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds