Wall clock time and date at job start Tue Mar 31 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31266 * 119.80044 * 2 1 4 4 C 1.33019 * 121.72951 * 180.02562 * 3 2 1 5 5 C 1.47961 * 119.45226 * 180.02562 * 4 3 2 6 6 C 1.39627 * 120.15429 * 179.72605 * 5 4 3 7 7 C 1.37897 * 119.85497 * 179.73344 * 6 5 4 8 8 C 1.38385 * 120.22020 * 0.57369 * 7 6 5 9 9 C 1.38624 * 120.20177 * 359.68470 * 8 7 6 10 10 C 1.37904 * 120.11501 * 0.02562 * 9 8 7 11 11 C 1.51211 * 108.23507 * 180.02562 * 9 8 7 12 12 N 1.48042 * 105.67293 * 342.46774 * 11 9 8 13 13 C 1.48039 * 103.91337 * 27.67800 * 12 11 9 14 14 C 1.39898 * 121.09500 * 359.72787 * 4 3 2 15 15 C 1.36606 * 119.46829 * 0.55381 * 14 4 3 16 16 C 1.40952 * 119.80280 * 180.02562 * 2 1 3 17 17 C 1.41059 * 120.55017 * 359.95923 * 16 2 1 18 18 H 1.08001 * 119.99985 * 334.68677 * 17 16 2 19 19 C 1.40026 * 119.99886 * 154.68723 * 17 16 2 20 20 N 1.30785 * 120.00045 * 343.65950 * 19 17 16 21 21 Si 1.86797 * 119.99867 * 163.66043 * 19 17 16 22 22 H 1.48504 * 109.47147 * 89.99887 * 21 19 17 23 23 H 1.48500 * 109.47269 * 209.99766 * 21 19 17 24 24 H 1.48497 * 109.47257 * 330.00127 * 21 19 17 25 25 H 1.08994 * 109.47255 * 269.97029 * 1 2 3 26 26 H 1.09005 * 109.46869 * 29.97446 * 1 2 3 27 27 H 1.09005 * 109.47028 * 149.97081 * 1 2 3 28 28 H 1.07998 * 120.06989 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.89428 * 180.25239 * 7 6 5 30 30 H 1.07995 * 120.04515 * 180.02562 * 10 9 8 31 31 H 1.09006 * 110.20505 * 101.51580 * 11 9 8 32 32 H 1.08994 * 110.21106 * 223.41592 * 11 9 8 33 33 H 1.00900 * 110.99726 * 147.05306 * 12 11 9 34 34 H 1.08995 * 110.20532 * 213.26031 * 13 12 11 35 35 H 1.08995 * 110.27445 * 91.39785 * 13 12 11 36 36 H 1.07999 * 120.26502 * 180.30634 * 14 4 3 37 37 H 1.07996 * 120.79046 * 179.72670 * 15 14 4 38 38 H 0.97002 * 120.00470 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1391 0.0000 4 6 3.4888 1.1839 -0.0005 5 6 4.1725 2.4960 0.0001 6 6 5.5673 2.5601 0.0053 7 6 6.1982 3.7863 0.0003 8 6 5.4535 4.9527 0.0021 9 6 4.0685 4.8958 0.0023 10 6 3.4261 3.6755 0.0013 11 6 3.5367 6.3114 0.0037 12 7 4.6686 7.1633 0.4336 13 6 5.8665 6.4076 0.0030 14 6 4.2512 0.0109 0.0046 15 6 3.6203 -1.2007 -0.0012 16 6 2.2075 -1.2231 -0.0005 17 6 1.5098 -2.4490 -0.0002 18 1 0.5081 -2.5001 0.4003 19 6 2.1159 -3.5997 -0.5192 20 7 3.1728 -3.4946 -1.2824 21 14 1.4149 -5.2848 -0.1215 22 1 0.4057 -5.6555 -1.1459 23 1 2.5095 -6.2884 -0.1192 24 1 0.7721 -5.2503 1.2167 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 6.1508 1.6513 0.0086 29 1 7.2770 3.8366 0.0003 30 1 2.3470 3.6325 0.0011 31 1 3.2130 6.5929 -0.9984 32 1 2.7090 6.4020 0.7069 33 1 4.6311 8.0670 -0.0136 34 1 6.6844 6.5664 0.7057 35 1 6.1667 6.7144 -0.9989 36 1 5.3300 0.0629 0.0091 37 1 4.1879 -2.1195 -0.0019 38 1 3.5925 -4.2916 -1.6422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242675310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:51 Heat of formation + Delta-G solvation = 50.605397 kcal Electronic energy + Delta-G solvation = -20398.678116 eV Core-core repulsion = 17397.825719 eV Total energy + Delta-G solvation = -3000.852397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.88632 -38.56078 -36.07586 -34.23809 -32.08072 -31.30824 -30.51950 -29.40163 -27.40615 -26.93229 -25.19124 -23.09538 -21.91298 -21.19690 -20.42140 -19.53162 -17.49169 -16.58250 -16.00655 -15.36931 -15.15123 -15.03009 -14.58086 -13.81915 -13.40170 -13.32388 -13.24343 -13.16448 -12.63845 -12.54926 -12.10122 -12.01258 -11.79352 -11.69122 -11.60812 -11.31976 -11.14351 -10.97367 -10.85036 -10.65444 -10.38287 -9.85730 -9.57254 -9.03500 -8.51691 -8.30777 -8.14426 -8.10584 -7.24820 -6.99958 -4.58809 1.47802 1.85332 2.61008 2.88050 2.91844 2.96070 3.10993 3.70129 4.12295 4.25658 4.58695 4.70581 4.75274 5.25082 5.37005 5.42944 5.46830 5.53012 5.64045 5.78331 5.85149 5.97845 6.10947 6.26507 6.32599 6.40974 6.45408 6.54772 6.59557 6.67872 6.73147 6.78833 6.88401 6.98369 7.03521 7.18152 7.21341 7.26992 7.41783 7.65193 7.74590 7.84525 8.26415 8.46827 8.57458 9.53240 9.84020 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.038494 B = 0.003663 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.204961 B = 7642.234385 C = 8275.496609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.008 3.992 3 N -0.445 5.445 4 C -0.004 4.004 5 C 0.028 3.972 6 C -0.133 4.133 7 C -0.094 4.094 8 C -0.141 4.141 9 C -0.105 4.105 10 C -0.092 4.092 11 C 0.083 3.917 12 N -0.661 5.661 13 C 0.087 3.913 14 C -0.124 4.124 15 C -0.143 4.143 16 C 0.075 3.925 17 C -0.430 4.430 18 H 0.090 0.910 19 C 0.071 3.929 20 N -0.776 5.776 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.257 1.257 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.340 0.660 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 8.868 0.333 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 N -0.154 5.154 4 C -0.138 4.138 5 C 0.027 3.973 6 C -0.152 4.152 7 C -0.113 4.113 8 C -0.142 4.142 9 C -0.106 4.106 10 C -0.112 4.112 11 C -0.046 4.046 12 N -0.289 5.289 13 C -0.042 4.042 14 C -0.144 4.144 15 C -0.168 4.168 16 C 0.070 3.930 17 C -0.458 4.458 18 H 0.108 0.892 19 C -0.149 4.149 20 N -0.399 5.399 21 Si 0.738 3.262 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.181 1.181 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.155 0.845 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.144 0.856 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.650 9.337 0.913 9.748 hybrid contribution 0.418 -1.594 -0.981 1.918 sum 3.069 7.742 -0.068 8.329 Atomic orbital electron populations 1.20261 0.90971 1.01260 1.00425 1.21004 0.95158 0.87965 1.09635 1.66716 1.08634 1.30440 1.09567 1.18680 0.89074 0.90503 1.15552 1.18586 0.91962 0.91854 0.94937 1.21105 0.93925 0.97149 1.02981 1.20200 0.98836 0.90945 1.01292 1.20364 0.94447 0.94198 1.05231 1.20359 0.94392 0.94219 1.01625 1.20545 1.00451 0.89562 1.00594 1.21344 0.94642 0.89334 0.99278 1.63474 1.01975 1.04862 1.58602 1.21277 0.94106 0.89918 0.98857 1.21290 0.98613 0.93433 1.01084 1.21299 0.94699 0.96619 1.04151 1.18424 0.92547 0.93177 0.88883 1.19712 1.01699 0.91946 1.32448 0.89240 1.26107 0.94185 1.02137 0.92513 1.69776 1.16925 1.32596 1.20583 0.86187 0.79605 0.79914 0.80501 1.19079 1.19808 1.18058 0.93266 0.93141 0.91454 0.85777 0.86735 0.85370 0.92852 0.89473 0.84497 0.89900 0.93223 0.88048 0.85575 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.00 0.34 -1.12 16 2 C 0.01 0.21 6.86 -81.81 -0.56 -0.36 16 3 N -0.45 -10.88 9.30 -5.39 -0.05 -10.93 16 4 C 0.00 -0.10 6.74 -82.75 -0.56 -0.66 16 5 C 0.03 0.57 5.88 -104.89 -0.62 -0.05 16 6 C -0.13 -2.38 9.42 -39.19 -0.37 -2.75 16 7 C -0.09 -1.48 10.03 -39.65 -0.40 -1.88 16 8 C -0.14 -2.22 6.27 -104.16 -0.65 -2.87 16 9 C -0.11 -1.77 6.25 -104.35 -0.65 -2.42 16 10 C -0.09 -1.78 9.57 -39.20 -0.38 -2.15 16 11 C 0.08 1.10 7.45 -4.10 -0.03 1.07 16 12 N -0.66 -8.00 7.71 -114.01 -0.88 -8.88 16 13 C 0.09 1.08 7.45 -4.08 -0.03 1.05 16 14 C -0.12 -2.88 9.38 -39.55 -0.37 -3.25 16 15 C -0.14 -3.57 8.73 -39.01 -0.34 -3.91 16 16 C 0.07 1.89 5.58 -106.64 -0.59 1.30 16 17 C -0.43 -10.41 8.14 -37.84 -0.31 -10.72 16 18 H 0.09 2.04 6.87 -52.49 -0.36 1.68 16 19 C 0.07 1.64 5.18 -17.33 -0.09 1.55 16 20 N -0.78 -18.48 10.95 55.55 0.61 -17.88 16 21 Si 0.91 17.01 29.59 -169.99 -5.03 11.98 16 22 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 24 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.33 6.77 -51.93 -0.35 0.98 16 28 H 0.12 2.07 6.15 -52.49 -0.32 1.74 16 29 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.13 2.52 7.52 -52.49 -0.39 2.13 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.34 3.09 8.92 -39.29 -0.35 2.74 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 2.07 6.15 -52.49 -0.32 1.74 16 37 H 0.13 3.16 6.26 -52.49 -0.33 2.84 16 38 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 315.21 15.07 4.75 4.75 Total: -1.00 -27.52 315.21 -10.73 -38.25 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.52 Total: 9.87 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -5.60 Total: -27.17 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.32 Total: -37.69 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.52 -10.73 -38.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242675310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.858 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds