Wall clock time and date at job start Tue Mar 31 2020 01:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31266 * 119.80044 * 2 1 4 4 C 1.33019 * 121.72951 * 180.02562 * 3 2 1 5 5 C 1.47961 * 119.45226 * 180.02562 * 4 3 2 6 6 C 1.39627 * 120.15429 * 179.72605 * 5 4 3 7 7 C 1.37897 * 119.85497 * 179.73344 * 6 5 4 8 8 C 1.38385 * 120.22020 * 0.57369 * 7 6 5 9 9 C 1.38624 * 120.20177 * 359.68470 * 8 7 6 10 10 C 1.37904 * 120.11501 * 0.02562 * 9 8 7 11 11 C 1.51211 * 108.23507 * 180.02562 * 9 8 7 12 12 N 1.48042 * 105.67293 * 342.46774 * 11 9 8 13 13 C 1.48039 * 103.91337 * 27.67800 * 12 11 9 14 14 C 1.39898 * 121.09500 * 359.72787 * 4 3 2 15 15 C 1.36606 * 119.46829 * 0.55381 * 14 4 3 16 16 C 1.40952 * 119.80280 * 180.02562 * 2 1 3 17 17 C 1.41059 * 120.55017 * 359.95923 * 16 2 1 18 18 H 1.08001 * 119.99985 * 334.68677 * 17 16 2 19 19 C 1.40026 * 119.99886 * 154.68723 * 17 16 2 20 20 N 1.30785 * 120.00045 * 343.65950 * 19 17 16 21 21 Si 1.86797 * 119.99867 * 163.66043 * 19 17 16 22 22 H 1.48504 * 109.47147 * 89.99887 * 21 19 17 23 23 H 1.48500 * 109.47269 * 209.99766 * 21 19 17 24 24 H 1.48497 * 109.47257 * 330.00127 * 21 19 17 25 25 H 1.08994 * 109.47255 * 269.97029 * 1 2 3 26 26 H 1.09005 * 109.46869 * 29.97446 * 1 2 3 27 27 H 1.09005 * 109.47028 * 149.97081 * 1 2 3 28 28 H 1.07998 * 120.06989 * 0.02562 * 6 5 4 29 29 H 1.07995 * 119.89428 * 180.25239 * 7 6 5 30 30 H 1.07995 * 120.04515 * 180.02562 * 10 9 8 31 31 H 1.09006 * 110.20505 * 101.51580 * 11 9 8 32 32 H 1.08994 * 110.21106 * 223.41592 * 11 9 8 33 33 H 1.00900 * 110.99726 * 147.05306 * 12 11 9 34 34 H 1.08995 * 110.20532 * 213.26031 * 13 12 11 35 35 H 1.08995 * 110.27445 * 91.39785 * 13 12 11 36 36 H 1.07999 * 120.26502 * 180.30634 * 14 4 3 37 37 H 1.07996 * 120.79046 * 179.72670 * 15 14 4 38 38 H 0.97002 * 120.00470 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1391 0.0000 4 6 3.4888 1.1839 -0.0005 5 6 4.1725 2.4960 0.0001 6 6 5.5673 2.5601 0.0053 7 6 6.1982 3.7863 0.0003 8 6 5.4535 4.9527 0.0021 9 6 4.0685 4.8958 0.0023 10 6 3.4261 3.6755 0.0013 11 6 3.5367 6.3114 0.0037 12 7 4.6686 7.1633 0.4336 13 6 5.8665 6.4076 0.0030 14 6 4.2512 0.0109 0.0046 15 6 3.6203 -1.2007 -0.0012 16 6 2.2075 -1.2231 -0.0005 17 6 1.5098 -2.4490 -0.0002 18 1 0.5081 -2.5001 0.4003 19 6 2.1159 -3.5997 -0.5192 20 7 3.1728 -3.4946 -1.2824 21 14 1.4149 -5.2848 -0.1215 22 1 0.4057 -5.6555 -1.1459 23 1 2.5095 -6.2884 -0.1192 24 1 0.7721 -5.2503 1.2167 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3633 -0.8898 -0.5143 28 1 6.1508 1.6513 0.0086 29 1 7.2770 3.8366 0.0003 30 1 2.3470 3.6325 0.0011 31 1 3.2130 6.5929 -0.9984 32 1 2.7090 6.4020 0.7069 33 1 4.6311 8.0670 -0.0136 34 1 6.6844 6.5664 0.7057 35 1 6.1667 6.7144 -0.9989 36 1 5.3300 0.0629 0.0091 37 1 4.1879 -2.1195 -0.0019 38 1 3.5925 -4.2916 -1.6422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242675310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:51 Heat of formation + Delta-G solvation = 34.915397 kcal Electronic energy + Delta-G solvation = -20399.358486 eV Core-core repulsion = 17397.825719 eV Total energy + Delta-G solvation = -3001.532766 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20363 -40.24441 -37.37240 -35.94613 -33.73559 -32.90193 -32.01771 -30.79702 -28.87240 -28.38756 -26.78989 -24.53498 -23.45218 -22.58939 -21.93879 -21.05978 -19.28060 -17.77394 -17.62110 -16.74199 -16.61938 -16.32746 -16.10142 -15.40793 -15.01621 -14.75977 -14.54961 -14.46885 -14.08268 -13.87931 -13.55486 -13.52124 -13.36552 -13.20717 -13.00471 -12.81066 -12.70192 -12.64886 -12.26550 -12.12539 -11.77113 -11.54392 -11.25541 -10.34828 -10.14821 -9.95054 -9.83540 -9.40662 -8.89365 -8.69228 -6.41481 -0.00914 0.49634 0.93000 1.12230 1.38853 1.50960 1.56905 2.14920 2.56647 2.97606 3.31925 3.48469 3.64602 3.69385 3.72030 4.15495 4.29039 4.37252 4.48325 4.49926 4.52698 4.56933 4.66315 4.72648 4.86848 4.93718 4.96563 5.00321 5.07542 5.11498 5.20690 5.26470 5.39507 5.41611 5.48569 5.68937 5.75141 5.80117 5.95306 6.03944 6.12858 6.40511 6.44484 6.67199 6.75165 7.69692 8.15525 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.038494 B = 0.003663 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.204961 B = 7642.234385 C = 8275.496609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.016 4.016 3 N -0.462 5.462 4 C -0.011 4.011 5 C -0.010 4.010 6 C -0.135 4.135 7 C -0.092 4.092 8 C -0.135 4.135 9 C -0.118 4.118 10 C -0.106 4.106 11 C 0.086 3.914 12 N -0.665 5.665 13 C 0.089 3.911 14 C -0.133 4.133 15 C -0.164 4.164 16 C 0.044 3.956 17 C -0.456 4.456 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.809 5.809 21 Si 0.989 3.011 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.254 1.254 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.151 0.849 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.360 0.640 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 10.446 0.397 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.161 4.161 3 N -0.170 5.170 4 C -0.146 4.146 5 C -0.011 4.011 6 C -0.154 4.154 7 C -0.110 4.110 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.125 4.125 11 C -0.043 4.043 12 N -0.295 5.295 13 C -0.039 4.039 14 C -0.152 4.152 15 C -0.189 4.189 16 C 0.040 3.960 17 C -0.484 4.484 18 H 0.114 0.886 19 C -0.184 4.184 20 N -0.433 5.433 21 Si 0.809 3.191 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.178 1.178 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.169 0.831 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.177 0.823 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.664 10.947 0.971 11.584 hybrid contribution 0.233 -1.832 -1.017 2.108 sum 3.897 9.115 -0.046 9.913 Atomic orbital electron populations 1.20247 0.88690 1.01782 1.01432 1.21604 0.97000 0.87859 1.09615 1.66819 1.09305 1.30498 1.10391 1.19265 0.89121 0.92120 1.14073 1.18648 0.93299 0.90935 0.98234 1.21282 0.92856 0.98743 1.02533 1.20567 1.00724 0.89960 0.99767 1.20954 0.94012 0.96242 1.02434 1.20728 0.95440 0.94894 1.00757 1.20495 0.99804 0.90564 1.01661 1.21354 0.95120 0.87430 1.00423 1.63453 1.01276 1.05585 1.59172 1.21388 0.94479 0.87246 1.00800 1.21536 0.99889 0.92976 1.00849 1.21356 0.95023 0.96908 1.05571 1.18777 0.93056 0.94245 0.89971 1.19962 1.02354 0.92498 1.33621 0.88569 1.26976 0.94263 1.05555 0.91623 1.69822 1.18120 1.34054 1.21278 0.85083 0.78949 0.74856 0.80254 1.18309 1.19097 1.17796 0.91906 0.92222 0.91165 0.85047 0.83089 0.86980 0.91094 0.89364 0.82272 0.88203 0.90753 0.85767 0.86474 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.68 9.58 71.24 0.68 -1.99 16 2 C -0.02 -0.80 6.86 43.31 0.30 -0.50 16 3 N -0.46 -23.51 9.30 -170.97 -1.59 -25.10 16 4 C -0.01 -0.56 6.74 41.94 0.28 -0.28 16 5 C -0.01 -0.43 5.88 -20.04 -0.12 -0.55 16 6 C -0.14 -4.74 9.42 22.52 0.21 -4.53 16 7 C -0.09 -2.64 10.03 22.22 0.22 -2.42 16 8 C -0.14 -3.84 6.27 -19.57 -0.12 -3.97 16 9 C -0.12 -3.76 6.25 -19.69 -0.12 -3.89 16 10 C -0.11 -4.13 9.57 22.52 0.22 -3.92 16 11 C 0.09 2.07 7.45 85.50 0.64 2.70 16 12 N -0.66 -13.54 7.71 -514.61 -3.97 -17.51 16 13 C 0.09 1.81 7.45 85.51 0.64 2.45 16 14 C -0.13 -6.41 9.38 22.29 0.21 -6.20 16 15 C -0.16 -8.57 8.73 22.64 0.20 -8.37 16 16 C 0.04 2.35 5.58 -21.17 -0.12 2.23 16 17 C -0.46 -22.83 8.14 23.40 0.19 -22.63 16 18 H 0.10 4.49 6.87 -2.91 -0.02 4.47 16 19 C 0.03 1.57 5.18 85.28 0.44 2.01 16 20 N -0.81 -39.62 10.95 21.84 0.24 -39.39 16 21 Si 0.99 34.93 29.59 68.60 2.03 36.96 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 24 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 27 H 0.07 2.84 6.77 -2.38 -0.02 2.82 16 28 H 0.13 4.28 6.15 -2.91 -0.02 4.26 16 29 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.11 4.61 7.52 -2.91 -0.02 4.59 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.36 5.02 8.92 -89.69 -0.80 4.22 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.12 5.19 6.15 -2.91 -0.02 5.18 16 37 H 0.12 6.20 6.26 -2.91 -0.02 6.18 16 38 H 0.30 12.93 8.30 -92.71 -0.77 12.16 16 Total: -1.00 -61.90 315.21 0.75 -61.15 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.30 Total: 33.75 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 3.74 Total: -49.85 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -5.32 Total: -82.00 kcal Atomic # 14 Polarization: 34.93 SS G_CDS: 2.03 Total: 36.96 kcal Total: -61.90 0.75 -61.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242675310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.066 kcal (2) G-P(sol) polarization free energy of solvation -61.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds