Wall clock time and date at job start Tue Mar 31 2020 01:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38870 * 119.24676 * 2 1 4 4 C 1.36883 * 119.79992 * 180.23488 * 3 2 1 5 5 C 1.41125 * 118.39402 * 359.49670 * 4 3 2 6 6 C 1.40890 * 120.71789 * 180.27134 * 5 4 3 7 7 H 1.07999 * 119.99585 * 149.30929 * 6 5 4 8 8 C 1.40074 * 120.00188 * 329.31533 * 6 5 4 9 9 N 1.30775 * 119.99951 * 162.69930 * 8 6 5 10 10 Si 1.86804 * 119.99978 * 342.69487 * 8 6 5 11 11 H 1.48501 * 109.47007 * 95.21313 * 10 8 6 12 12 H 1.48496 * 109.46949 * 215.21009 * 10 8 6 13 13 H 1.48499 * 109.47127 * 335.21256 * 10 8 6 14 14 C 1.41859 * 118.56146 * 0.25925 * 5 4 3 15 15 C 1.47824 * 119.99269 * 180.02562 * 14 5 4 16 16 C 1.40098 * 120.56619 * 310.39026 * 15 14 5 17 17 C 1.38314 * 118.28497 * 180.02562 * 16 15 14 18 18 C 1.38391 * 119.31764 * 0.02562 * 17 16 15 19 19 N 1.31934 * 121.09706 * 359.97314 * 18 17 16 20 20 C 1.31686 * 121.88349 * 359.75160 * 19 18 17 21 21 C 1.50697 * 119.72498 * 180.29320 * 20 19 18 22 22 C 1.52999 * 117.49900 * 7.08096 * 21 20 19 23 23 C 1.53001 * 60.00195 * 252.51421 * 22 21 20 24 24 N 1.31750 * 119.25210 * 179.72485 * 2 1 3 25 25 H 1.08997 * 109.46840 * 270.27170 * 1 2 3 26 26 H 1.08993 * 109.47257 * 30.27582 * 1 2 3 27 27 H 1.08997 * 109.46627 * 150.27401 * 1 2 3 28 28 H 1.08008 * 120.10145 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.80177 * 179.77930 * 4 3 2 30 30 H 0.96999 * 119.99651 * 180.02562 * 9 8 6 31 31 H 1.07999 * 120.85279 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.34039 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.45093 * 179.97438 * 18 17 16 34 34 H 1.08994 * 115.55436 * 152.79676 * 21 20 19 35 35 H 1.08997 * 117.49970 * 0.02562 * 22 21 20 36 36 H 1.08999 * 117.50002 * 145.03156 * 22 21 20 37 37 H 1.08999 * 117.50458 * 252.50993 * 23 22 21 38 38 H 1.09003 * 117.51698 * 107.48171 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5542 1.2249 -0.0049 5 6 4.2373 -0.0100 0.0011 6 6 5.6455 -0.0535 0.0022 7 1 6.1601 -0.8720 0.4836 8 6 6.3782 0.9648 -0.6209 9 7 7.6468 1.1208 -0.3442 10 14 5.5433 2.0999 -1.8473 11 1 5.0985 3.3358 -1.1545 12 1 6.5011 2.4541 -2.9254 13 1 4.3666 1.4121 -2.4368 14 6 3.4753 -1.2066 0.0063 15 6 4.1583 -2.5175 0.0132 16 6 5.1815 -2.7927 -0.9034 17 6 5.7879 -4.0348 -0.8553 18 6 5.3687 -4.9576 0.0870 19 7 4.4022 -4.6712 0.9382 20 6 3.7976 -3.5014 0.9362 21 6 2.7038 -3.2238 1.9350 22 6 2.4586 -4.2709 3.0232 23 6 1.4557 -4.1071 1.8794 24 7 2.1508 -1.1495 0.0055 25 1 -0.3633 0.0049 1.0276 26 1 -0.3633 0.8874 -0.5181 27 1 -0.3632 -0.8924 -0.5096 28 1 1.6348 2.1408 -0.0004 29 1 4.0983 2.1578 -0.0085 30 1 8.1540 1.8262 -0.7754 31 1 5.4881 -2.0542 -1.6293 32 1 6.5805 -4.2821 -1.5460 33 1 5.8405 -5.9283 0.1262 34 1 2.5675 -2.1764 2.2041 35 1 3.0886 -5.1604 3.0170 36 1 2.1610 -3.9125 4.0086 37 1 0.4984 -3.6408 2.1123 38 1 1.4256 -4.8886 1.1202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243686821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:22 Heat of formation + Delta-G solvation = 76.960235 kcal Electronic energy + Delta-G solvation = -21500.436171 eV Core-core repulsion = 18500.726606 eV Total energy + Delta-G solvation = -2999.709565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.90962 -38.53414 -36.31032 -34.37038 -32.85706 -31.71984 -31.13700 -29.53329 -28.07842 -24.72858 -23.92983 -22.98111 -21.91438 -21.42400 -20.37896 -20.05600 -17.61932 -16.60283 -15.94610 -15.60121 -15.49983 -14.64042 -14.56173 -13.90115 -13.65076 -13.40305 -13.28633 -13.12761 -12.68496 -12.29978 -12.12053 -11.99563 -11.71405 -11.63650 -11.28926 -11.06640 -11.01447 -10.88631 -10.38766 -10.21370 -10.13714 -9.94732 -9.60585 -9.12027 -8.94040 -8.56416 -8.32260 -8.09669 -7.52354 -7.21448 -4.70535 1.55198 1.92242 2.34149 2.60088 2.91040 3.02343 3.11549 3.74211 4.17847 4.30480 4.65347 4.79252 5.10394 5.16256 5.25781 5.44101 5.54248 5.63223 5.75225 5.75723 5.83782 5.95147 6.02474 6.06523 6.12679 6.19985 6.23638 6.30388 6.38698 6.43673 6.53501 6.59879 6.68425 6.75544 6.83647 6.97707 7.03859 7.28720 7.33029 7.49878 7.66990 8.05321 8.27672 8.46235 8.61460 9.29402 9.78072 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.008163 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.881850 B = 3429.282741 C = 4829.894804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.015 4.015 3 C -0.114 4.114 4 C -0.202 4.202 5 C 0.061 3.939 6 C -0.423 4.423 7 H 0.099 0.901 8 C 0.084 3.916 9 N -0.788 5.788 10 Si 0.907 3.093 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.244 1.244 14 C 0.039 3.961 15 C -0.021 4.021 16 C -0.047 4.047 17 C -0.184 4.184 18 C 0.080 3.920 19 N -0.491 5.491 20 C 0.162 3.838 21 C -0.083 4.083 22 C -0.174 4.174 23 C -0.152 4.152 24 N -0.427 5.427 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.290 0.710 31 H 0.138 0.862 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -3.791 -0.425 6.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.155 4.155 3 C -0.134 4.134 4 C -0.227 4.227 5 C 0.056 3.944 6 C -0.451 4.451 7 H 0.117 0.883 8 C -0.138 4.138 9 N -0.410 5.410 10 Si 0.732 3.268 11 H -0.193 1.193 12 H -0.212 1.212 13 H -0.167 1.167 14 C -0.102 4.102 15 C -0.023 4.023 16 C -0.074 4.074 17 C -0.204 4.204 18 C -0.078 4.078 19 N -0.199 5.199 20 C 0.024 3.976 21 C -0.102 4.102 22 C -0.211 4.211 23 C -0.190 4.190 24 N -0.135 5.135 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.162 0.838 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.821 -5.068 0.173 7.720 hybrid contribution 0.843 2.278 -1.187 2.703 sum -4.978 -2.790 -1.014 5.796 Atomic orbital electron populations 1.20280 0.91056 1.01127 1.00680 1.20286 0.95118 0.88196 1.11883 1.21197 0.94750 0.97715 0.99751 1.21116 0.94037 0.97417 1.10159 1.18405 0.94369 0.90990 0.90647 1.19469 0.89494 1.07187 1.28917 0.88310 1.26236 0.94789 0.96192 0.96596 1.69654 1.08940 1.28066 1.34345 0.86363 0.80177 0.80315 0.79929 1.19257 1.21169 1.16709 1.19187 0.88236 0.90600 1.12174 1.19064 0.95375 0.92930 0.94961 1.21737 0.93149 0.95626 0.96873 1.21925 1.02120 0.95001 1.01362 1.22473 0.94125 0.99064 0.92135 1.67185 1.08637 1.20293 1.23819 1.20387 0.94649 0.88652 0.93939 1.20645 0.94888 0.96979 0.97671 1.22947 1.03248 1.01693 0.93247 1.22742 0.93263 1.01957 1.00991 1.66966 1.09240 1.29014 1.08282 0.92953 0.92868 0.92301 0.87778 0.87200 0.89934 0.84419 0.85553 0.83754 0.86687 0.87928 0.89477 0.89080 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.15 36.01 0.37 -0.83 16 2 C -0.02 -0.31 6.79 -82.39 -0.56 -0.87 16 3 C -0.11 -2.35 9.65 -39.84 -0.38 -2.74 16 4 C -0.20 -4.59 7.22 -38.98 -0.28 -4.87 16 5 C 0.06 1.47 5.09 -106.41 -0.54 0.93 16 6 C -0.42 -10.53 7.54 -37.89 -0.29 -10.82 16 7 H 0.10 2.64 7.03 -52.49 -0.37 2.27 16 8 C 0.08 2.01 5.43 -17.31 -0.09 1.92 16 9 N -0.79 -19.36 13.93 55.55 0.77 -18.58 16 10 Si 0.91 19.17 24.54 -169.99 -4.17 15.00 16 11 H -0.27 -5.47 6.72 56.52 0.38 -5.09 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.24 -5.37 6.84 56.52 0.39 -4.98 16 14 C 0.04 0.91 5.57 -82.24 -0.46 0.45 16 15 C -0.02 -0.45 5.08 -104.76 -0.53 -0.98 16 16 C -0.05 -0.96 8.21 -38.86 -0.32 -1.27 16 17 C -0.18 -3.15 10.10 -39.50 -0.40 -3.55 16 18 C 0.08 1.35 11.17 -17.45 -0.19 1.15 16 19 N -0.49 -9.39 9.31 -9.11 -0.08 -9.47 16 20 C 0.16 3.32 6.49 -82.13 -0.53 2.79 16 21 C -0.08 -1.57 4.87 -91.77 -0.45 -2.01 16 22 C -0.17 -2.75 10.02 -26.73 -0.27 -3.02 16 23 C -0.15 -2.45 10.23 -26.73 -0.27 -2.73 16 24 N -0.43 -9.50 8.70 -5.45 -0.05 -9.55 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 29 H 0.11 2.44 4.87 -52.49 -0.26 2.18 16 30 H 0.29 6.43 8.29 -40.82 -0.34 6.09 16 31 H 0.14 2.81 7.34 -52.49 -0.39 2.43 16 32 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.12 2.37 6.97 -51.93 -0.36 2.00 16 35 H 0.10 1.65 7.56 -51.93 -0.39 1.26 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 315.76 15.07 4.76 4.76 Total: -1.00 -26.68 315.76 -8.71 -35.39 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.74 Total: 8.92 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -5.21 Total: -26.46 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.64 Total: -37.61 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.17 Total: 15.00 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.68 -8.71 -35.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243686821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.349 kcal (2) G-P(sol) polarization free energy of solvation -26.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds