Wall clock time and date at job start Tue Mar 31 2020 01:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38340 * 119.86544 * 2 1 4 4 C 1.37955 * 120.17099 * 179.69575 * 3 2 1 5 5 C 1.39593 * 119.90521 * 0.52886 * 4 3 2 6 6 C 1.47849 * 120.13463 * 179.74317 * 5 4 3 7 7 O 1.21546 * 120.00122 * 200.31846 * 6 5 4 8 8 N 1.34772 * 119.99524 * 20.31732 * 6 5 4 9 9 C 1.46498 * 120.00719 * 6.98013 * 8 6 5 10 10 C 1.46501 * 119.99966 * 186.98149 * 8 6 5 11 11 C 1.52997 * 109.47232 * 270.00015 * 10 8 6 12 12 N 1.46499 * 109.47477 * 179.97438 * 11 10 8 13 13 C 1.36938 * 120.00333 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.38813 * 120.00187 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99964 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99974 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46858 * 89.99795 * 17 15 13 19 19 H 1.48494 * 109.47082 * 209.99605 * 17 15 13 20 20 H 1.48505 * 109.47322 * 330.00082 * 17 15 13 21 21 C 1.39535 * 119.73362 * 359.46663 * 5 4 3 22 22 C 1.38211 * 119.82630 * 0.28456 * 21 5 4 23 23 F 1.35102 * 119.95423 * 180.02562 * 22 21 5 24 24 H 1.08997 * 109.47784 * 270.02849 * 1 2 3 25 25 H 1.09002 * 109.46768 * 30.03051 * 1 2 3 26 26 H 1.09002 * 109.46700 * 150.02138 * 1 2 3 27 27 H 1.07999 * 119.91406 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.04743 * 180.27046 * 4 3 2 29 29 H 1.09002 * 109.47139 * 265.97145 * 9 8 6 30 30 H 1.09008 * 109.46607 * 25.96496 * 9 8 6 31 31 H 1.08996 * 109.47508 * 145.96372 * 9 8 6 32 32 H 1.09004 * 109.46988 * 29.99808 * 10 8 6 33 33 H 1.08998 * 109.47782 * 150.00106 * 10 8 6 34 34 H 1.09004 * 109.46965 * 299.99807 * 11 10 8 35 35 H 1.09004 * 109.47316 * 59.99375 * 11 10 8 36 36 H 0.97000 * 120.00178 * 0.02562 * 12 11 10 37 37 H 0.97005 * 120.00078 * 179.97438 * 16 15 13 38 38 H 1.07997 * 120.08824 * 180.25258 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5754 1.2070 0.0063 5 6 4.2778 0.0007 0.0016 6 6 5.7563 0.0028 0.0026 7 8 6.3657 -0.9819 -0.3668 8 7 6.4283 1.0965 0.4131 9 6 5.7021 2.2248 1.0010 10 6 7.8852 1.1572 0.2714 11 6 8.5441 0.5935 1.5319 12 7 10.0010 0.6535 1.3900 13 6 10.8067 0.2015 2.4008 14 1 10.3681 -0.1998 3.3026 15 6 12.1871 0.2589 2.2666 16 7 12.7216 0.7483 1.1679 17 14 13.2861 -0.3571 3.6458 18 1 13.5750 -1.7994 3.4417 19 1 14.5588 0.4078 3.6437 20 1 12.5979 -0.1697 4.9483 21 6 3.5790 -1.2070 0.0017 22 6 2.1969 -1.2015 0.0006 23 9 1.5177 -2.3694 0.0013 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6523 2.1329 -0.0004 28 1 4.1112 2.1447 0.0107 29 1 5.4764 2.9559 0.2245 30 1 4.7728 1.8673 1.4445 31 1 6.3166 2.6908 1.7712 32 1 8.1910 0.5677 -0.5930 33 1 8.1940 2.1932 0.1324 34 1 8.2383 1.1829 2.3963 35 1 8.2354 -0.4426 1.6710 36 1 10.3950 1.0142 0.5803 37 1 13.6863 0.7888 1.0743 38 1 4.1167 -2.1436 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317607708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:07 Heat of formation + Delta-G solvation = -20.795009 kcal Electronic energy + Delta-G solvation = -21067.446678 eV Core-core repulsion = 17632.728903 eV Total energy + Delta-G solvation = -3434.717775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.16158 -40.58690 -38.55266 -36.07500 -34.54005 -33.25480 -31.55227 -30.82660 -28.68206 -27.61605 -26.52552 -23.99997 -23.03325 -22.37495 -21.44748 -19.89508 -17.95713 -17.22866 -16.88503 -16.32866 -16.05332 -15.84476 -15.48171 -15.33004 -14.54080 -14.20326 -13.80628 -13.74073 -13.57694 -13.50105 -13.31614 -13.15896 -12.86590 -12.75712 -12.58301 -12.12294 -11.63507 -11.29240 -11.22111 -10.99353 -10.88748 -10.67717 -10.10406 -9.89637 -9.70337 -9.29470 -8.92609 -8.85680 -8.57838 -6.91903 -5.74784 -3.03965 0.45569 0.84871 2.62665 2.91670 3.45730 3.46003 3.50859 3.52426 3.91186 4.22149 4.35376 4.46866 4.62751 4.64481 4.85285 4.99376 5.16482 5.17901 5.18997 5.30087 5.44554 5.54221 5.58727 5.62129 5.66602 5.75112 5.80337 5.91371 5.93337 6.02158 6.09810 6.47230 6.53739 6.73600 6.90837 7.39326 7.72040 8.16557 8.43793 9.54724 10.10628 10.45779 11.48206 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035866 B = 0.003029 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.493387 B = 9241.317908 C = 9595.043649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.100 4.100 3 C -0.104 4.104 4 C -0.116 4.116 5 C -0.104 4.104 6 C 0.553 3.447 7 O -0.522 6.522 8 N -0.604 5.604 9 C 0.062 3.938 10 C 0.109 3.891 11 C 0.142 3.858 12 N -0.730 5.730 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.092 4.092 22 C 0.087 3.913 23 F -0.135 7.135 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.159 0.841 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.018 0.982 35 H 0.025 0.975 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.512 4.596 -3.086 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.101 4.101 3 C -0.122 4.122 4 C -0.134 4.134 5 C -0.108 4.108 6 C 0.340 3.660 7 O -0.398 6.398 8 N -0.337 5.337 9 C -0.080 4.080 10 C -0.013 4.013 11 C 0.013 3.987 12 N -0.375 5.375 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.112 4.112 22 C 0.068 3.932 23 F -0.114 7.114 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.156 0.844 28 H 0.176 0.824 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.131 3.969 -3.123 26.615 hybrid contribution 0.704 -0.409 0.532 0.973 sum -25.427 3.560 -2.591 25.805 Atomic orbital electron populations 1.20791 0.89927 1.03587 1.03083 1.20168 0.97251 0.92019 1.00655 1.20916 0.93799 0.97163 1.00303 1.22392 0.94594 0.99008 0.97357 1.19782 0.93538 0.93450 1.03999 1.18210 0.86566 0.82956 0.78232 1.90836 1.69354 1.32334 1.47295 1.47646 1.08136 1.16796 1.61097 1.22465 0.98189 0.88957 0.98416 1.21765 0.76735 1.02170 1.00645 1.20912 0.85885 0.97906 0.93955 1.42206 0.98852 1.75903 1.20570 1.19210 0.87963 1.33496 0.96220 0.91194 1.24749 0.96637 1.01919 0.97705 1.69660 1.10556 1.51550 1.26500 0.86158 0.80223 0.78301 0.81325 1.21653 1.21733 1.20757 1.21238 0.91964 0.99667 0.98306 1.17355 0.89584 0.81243 1.05021 1.91500 1.79865 1.46022 1.94000 0.90443 0.90675 0.90988 0.84390 0.82360 0.91881 0.89713 0.90438 0.89607 0.90139 0.96402 0.95720 0.78263 0.93481 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.83 36.01 0.35 -0.35 16 2 C -0.10 -0.85 5.89 -104.47 -0.62 -1.46 16 3 C -0.10 -0.75 9.68 -39.65 -0.38 -1.13 16 4 C -0.12 -1.00 7.61 -39.18 -0.30 -1.29 16 5 C -0.10 -1.27 5.57 -104.98 -0.58 -1.85 16 6 C 0.55 8.62 7.51 -12.33 -0.09 8.53 16 7 O -0.52 -10.41 16.19 5.33 0.09 -10.33 16 8 N -0.60 -8.48 2.87 -182.69 -0.52 -9.00 16 9 C 0.06 0.57 8.65 59.85 0.52 1.09 16 10 C 0.11 1.86 5.49 -4.04 -0.02 1.84 16 11 C 0.14 3.04 6.58 -4.04 -0.03 3.01 16 12 N -0.73 -19.26 5.60 -59.91 -0.34 -19.59 16 13 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 14 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 17 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.09 -1.13 9.57 -39.11 -0.37 -1.51 16 22 C 0.09 0.94 7.23 -39.48 -0.29 0.66 16 23 F -0.14 -1.53 16.46 2.25 0.04 -1.49 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 26 H 0.07 0.45 7.63 -51.93 -0.40 0.06 16 27 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 28 H 0.16 1.03 4.04 -52.49 -0.21 0.82 16 29 H 0.06 0.41 7.02 -51.93 -0.36 0.05 16 30 H 0.08 0.65 5.22 -51.92 -0.27 0.38 16 31 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.09 1.62 7.53 -51.93 -0.39 1.23 16 33 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 38 H 0.15 1.92 7.79 -52.49 -0.41 1.51 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -34.74 323.93 -7.07 -41.81 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.85 Total: 3.94 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -2.06 Total: -0.04 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.14 Total: -56.65 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.74 -7.07 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317607708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.013 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds