Wall clock time and date at job start Tue Mar 31 2020 01:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38340 * 119.86544 * 2 1 4 4 C 1.37955 * 120.17099 * 179.69575 * 3 2 1 5 5 C 1.39593 * 119.90521 * 0.52886 * 4 3 2 6 6 C 1.47849 * 120.13463 * 179.74317 * 5 4 3 7 7 O 1.21546 * 120.00122 * 200.31846 * 6 5 4 8 8 N 1.34772 * 119.99524 * 20.31732 * 6 5 4 9 9 C 1.46498 * 120.00719 * 6.98013 * 8 6 5 10 10 C 1.46501 * 119.99966 * 186.98149 * 8 6 5 11 11 C 1.52997 * 109.47232 * 270.00015 * 10 8 6 12 12 N 1.46499 * 109.47477 * 179.97438 * 11 10 8 13 13 C 1.36938 * 120.00333 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00070 * 0.02562 * 13 12 11 15 15 C 1.38813 * 120.00187 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99964 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99974 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46858 * 89.99795 * 17 15 13 19 19 H 1.48494 * 109.47082 * 209.99605 * 17 15 13 20 20 H 1.48505 * 109.47322 * 330.00082 * 17 15 13 21 21 C 1.39535 * 119.73362 * 359.46663 * 5 4 3 22 22 C 1.38211 * 119.82630 * 0.28456 * 21 5 4 23 23 F 1.35102 * 119.95423 * 180.02562 * 22 21 5 24 24 H 1.08997 * 109.47784 * 270.02849 * 1 2 3 25 25 H 1.09002 * 109.46768 * 30.03051 * 1 2 3 26 26 H 1.09002 * 109.46700 * 150.02138 * 1 2 3 27 27 H 1.07999 * 119.91406 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.04743 * 180.27046 * 4 3 2 29 29 H 1.09002 * 109.47139 * 265.97145 * 9 8 6 30 30 H 1.09008 * 109.46607 * 25.96496 * 9 8 6 31 31 H 1.08996 * 109.47508 * 145.96372 * 9 8 6 32 32 H 1.09004 * 109.46988 * 29.99808 * 10 8 6 33 33 H 1.08998 * 109.47782 * 150.00106 * 10 8 6 34 34 H 1.09004 * 109.46965 * 299.99807 * 11 10 8 35 35 H 1.09004 * 109.47316 * 59.99375 * 11 10 8 36 36 H 0.97000 * 120.00178 * 0.02562 * 12 11 10 37 37 H 0.97005 * 120.00078 * 179.97438 * 16 15 13 38 38 H 1.07997 * 120.08824 * 180.25258 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1997 0.0000 4 6 3.5754 1.2070 0.0063 5 6 4.2778 0.0007 0.0016 6 6 5.7563 0.0028 0.0026 7 8 6.3657 -0.9819 -0.3668 8 7 6.4283 1.0965 0.4131 9 6 5.7021 2.2248 1.0010 10 6 7.8852 1.1572 0.2714 11 6 8.5441 0.5935 1.5319 12 7 10.0010 0.6535 1.3900 13 6 10.8067 0.2015 2.4008 14 1 10.3681 -0.1998 3.3026 15 6 12.1871 0.2589 2.2666 16 7 12.7216 0.7483 1.1679 17 14 13.2861 -0.3571 3.6458 18 1 13.5750 -1.7994 3.4417 19 1 14.5588 0.4078 3.6437 20 1 12.5979 -0.1697 4.9483 21 6 3.5790 -1.2070 0.0017 22 6 2.1969 -1.2015 0.0006 23 9 1.5177 -2.3694 0.0013 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6523 2.1329 -0.0004 28 1 4.1112 2.1447 0.0107 29 1 5.4764 2.9559 0.2245 30 1 4.7728 1.8673 1.4445 31 1 6.3166 2.6908 1.7712 32 1 8.1910 0.5677 -0.5930 33 1 8.1940 2.1932 0.1324 34 1 8.2383 1.1829 2.3963 35 1 8.2354 -0.4426 1.6710 36 1 10.3950 1.0142 0.5803 37 1 13.6863 0.7888 1.0743 38 1 4.1167 -2.1436 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317607708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:06 Heat of formation + Delta-G solvation = -44.036359 kcal Electronic energy + Delta-G solvation = -21068.454499 eV Core-core repulsion = 17632.728903 eV Total energy + Delta-G solvation = -3435.725596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.00038 -41.61623 -39.47895 -37.50158 -36.26689 -34.19864 -33.27537 -31.81378 -30.06027 -28.48999 -27.64370 -25.73438 -24.03320 -23.48784 -22.78861 -21.00360 -19.30860 -18.88297 -17.90017 -17.19468 -17.05115 -16.78321 -16.75099 -16.53165 -16.19005 -15.35116 -15.25333 -15.13371 -14.80425 -14.41509 -14.33126 -14.24213 -14.10419 -13.61605 -13.20653 -13.07872 -12.92550 -12.88741 -12.64646 -12.45235 -12.36364 -12.14381 -11.94262 -11.89304 -11.07204 -10.99121 -10.07438 -9.77745 -9.66616 -9.09053 -8.00039 -5.30930 -0.36103 0.09495 1.44639 1.47867 1.55909 1.61202 1.81943 2.53799 2.57814 3.11719 3.33085 3.38588 3.66212 3.79093 3.92764 4.03169 4.09199 4.17634 4.20581 4.30081 4.53196 4.59840 4.60997 4.63847 4.78186 4.87930 4.93478 4.97601 5.01021 5.08318 5.15498 5.19958 5.28111 5.39080 5.47756 5.78119 6.21649 6.27955 7.00030 7.27863 7.98992 8.24968 9.23311 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035866 B = 0.003029 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.493387 B = 9241.317908 C = 9595.043649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 C -0.089 4.089 4 C -0.100 4.100 5 C -0.125 4.125 6 C 0.546 3.454 7 O -0.584 6.584 8 N -0.600 5.600 9 C 0.051 3.949 10 C 0.123 3.877 11 C 0.147 3.853 12 N -0.742 5.742 13 C -0.253 4.253 14 H 0.072 0.928 15 C -0.072 4.072 16 N -0.967 5.967 17 Si 0.978 3.022 18 H -0.289 1.289 19 H -0.288 1.288 20 H -0.268 1.268 21 C -0.114 4.114 22 C 0.068 3.932 23 F -0.145 7.145 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.185 0.815 28 H 0.188 0.812 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.032 0.968 35 H -0.005 1.005 36 H 0.377 0.623 37 H 0.254 0.746 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.982 7.315 -2.208 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.091 4.091 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.128 4.128 6 C 0.336 3.664 7 O -0.465 6.465 8 N -0.331 5.331 9 C -0.090 4.090 10 C 0.000 4.000 11 C 0.020 3.980 12 N -0.386 5.386 13 C -0.384 4.384 14 H 0.090 0.910 15 C -0.265 4.265 16 N -0.617 5.617 17 Si 0.806 3.194 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.192 1.192 21 C -0.134 4.134 22 C 0.049 3.951 23 F -0.123 7.123 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.203 0.797 28 H 0.204 0.796 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.013 0.987 36 H 0.209 0.791 37 H 0.063 0.937 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -28.663 6.724 -2.216 29.524 hybrid contribution 1.348 -1.239 0.260 1.849 sum -27.315 5.486 -1.956 27.929 Atomic orbital electron populations 1.20907 0.87776 1.04626 1.04137 1.20601 0.98820 0.91318 0.98376 1.21427 0.93131 0.98308 0.97786 1.22700 0.95379 0.98307 0.95335 1.19539 0.91279 0.94937 1.07028 1.18860 0.88146 0.82305 0.77120 1.90794 1.70855 1.34678 1.50187 1.47710 1.06864 1.17888 1.60656 1.22897 0.98432 0.87896 0.99731 1.21417 0.78730 1.02644 0.97251 1.20958 0.83688 0.96652 0.96734 1.42378 1.00745 1.75688 1.19785 1.19583 0.88791 1.33224 0.96820 0.91047 1.25626 0.98032 1.02526 1.00303 1.69810 1.10661 1.52831 1.28425 0.85085 0.78111 0.77356 0.78852 1.21610 1.21458 1.19228 1.21139 0.92957 0.99118 1.00178 1.17537 0.89049 0.82090 1.06407 1.91470 1.79817 1.46804 1.94234 0.89213 0.87919 0.91739 0.79747 0.79564 0.88006 0.87860 0.90017 0.92200 0.87507 0.94990 0.98674 0.79126 0.93703 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.83 71.24 0.70 -0.27 16 2 C -0.09 -1.26 5.89 -19.76 -0.12 -1.38 16 3 C -0.09 -0.85 9.68 22.23 0.22 -0.64 16 4 C -0.10 -1.36 7.61 22.53 0.17 -1.19 16 5 C -0.12 -3.00 5.57 -20.09 -0.11 -3.11 16 6 C 0.55 17.58 7.51 86.79 0.65 18.23 16 7 O -0.58 -25.29 16.19 -3.86 -0.06 -25.35 16 8 N -0.60 -16.41 2.87 -850.20 -2.44 -18.85 16 9 C 0.05 0.74 8.65 127.77 1.11 1.85 16 10 C 0.12 4.24 5.49 86.38 0.47 4.71 16 11 C 0.15 6.45 6.58 86.38 0.57 7.01 16 12 N -0.74 -40.04 5.60 -343.44 -1.92 -41.96 16 13 C -0.25 -14.85 9.99 84.03 0.84 -14.01 16 14 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 15 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 16 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 17 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 18 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.11 -2.97 9.57 22.58 0.22 -2.75 16 22 C 0.07 1.46 7.23 22.34 0.16 1.63 16 23 F -0.14 -3.37 16.46 44.97 0.74 -2.63 16 24 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.10 0.32 8.08 -2.39 -0.02 0.30 16 26 H 0.06 0.66 7.63 -2.39 -0.02 0.64 16 27 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 28 H 0.19 1.43 4.04 -2.91 -0.01 1.41 16 29 H 0.10 0.79 7.02 -2.39 -0.02 0.77 16 30 H 0.10 1.17 5.22 -2.38 -0.01 1.16 16 31 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.06 2.38 7.53 -2.38 -0.02 2.36 16 33 H 0.11 3.12 8.07 -2.39 -0.02 3.10 16 34 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 36 H 0.38 21.07 7.67 -92.71 -0.71 20.36 16 37 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 38 H 0.12 3.63 7.79 -2.91 -0.02 3.61 16 Total: -1.00 -80.18 323.93 4.34 -75.84 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.38 Total: 17.49 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.34 Total: 6.27 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -4.08 Total: -120.96 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.35 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.74 Total: -2.63 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -80.18 4.34 -75.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317607708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.801 kcal (2) G-P(sol) polarization free energy of solvation -80.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds