Wall clock time and date at job start Tue Mar 31 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46844 * 239.99755 * 3 2 1 5 5 H 1.48498 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46981 * 119.99765 * 3 2 1 7 7 C 1.37874 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45864 * 179.97438 * 9 7 2 11 11 C 1.53195 * 109.31046 * 178.62817 * 10 9 7 12 12 N 1.46925 * 108.77662 * 54.63235 * 11 10 9 13 13 C 1.34777 * 120.62933 * 126.37171 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27723 * 13 12 11 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 12 17 17 N 1.28944 * 126.47759 * 90.02337 * 16 15 13 18 18 N 1.28567 * 109.63495 * 179.97438 * 17 16 15 19 19 C 1.33383 * 109.89616 * 359.97438 * 18 17 16 20 20 N 1.39626 * 126.26223 * 179.97438 * 19 18 17 21 21 N 1.31688 * 107.48198 * 359.76078 * 19 18 17 22 22 C 1.46931 * 118.73924 * 306.64212 * 12 11 10 23 23 C 1.52760 * 109.00543 * 53.31068 * 22 12 11 24 24 H 0.97004 * 119.99633 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.45607 * 299.96933 * 9 7 2 26 26 H 1.08994 * 109.49700 * 58.67777 * 10 9 7 27 27 H 1.08997 * 109.52427 * 298.59270 * 10 9 7 28 28 H 1.09005 * 109.58240 * 294.84926 * 11 10 9 29 29 H 1.08995 * 109.70318 * 174.49170 * 11 10 9 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 0.97001 * 119.99429 * 0.02562 * 20 19 18 33 33 H 0.96994 * 120.00094 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.58191 * 173.14261 * 22 12 11 35 35 H 1.09000 * 109.58404 * 293.56973 * 22 12 11 36 36 H 1.09004 * 109.56227 * 185.55021 * 23 22 12 37 37 H 1.09000 * 109.38786 * 65.51167 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2458 -3.6622 0.0005 11 6 1.4767 -4.9866 0.0351 12 7 0.5224 -5.0087 -1.0818 13 6 0.5122 -6.0344 -1.9560 14 8 1.2960 -6.9506 -1.8251 15 6 -0.4686 -6.0395 -3.1002 16 7 -0.2751 -7.2490 -3.9038 17 7 -0.8615 -8.3846 -3.7332 18 7 -0.4523 -9.2198 -4.6209 19 6 0.4397 -8.6323 -5.4198 20 7 1.1010 -9.2259 -6.4968 21 7 0.5793 -7.3886 -5.0100 22 6 -0.4165 -3.8884 -1.2311 23 6 0.3701 -2.5790 -1.2484 24 1 -0.4850 0.8401 -0.0004 25 1 0.6245 -2.5567 0.8907 26 1 2.8881 -3.5915 0.8782 27 1 2.8562 -3.6195 -0.9015 28 1 0.9370 -5.0712 0.9785 29 1 2.1735 -5.8189 -0.0631 30 1 -1.4852 -6.0231 -2.7074 31 1 -0.3053 -5.1597 -3.7226 32 1 0.9254 -10.1529 -6.7224 33 1 1.7358 -8.7114 -7.0194 34 1 -0.9666 -3.9949 -2.1660 35 1 -1.1135 -3.8817 -0.3932 36 1 -0.3224 -1.7373 -1.2596 37 1 0.9978 -2.5457 -2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611466607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:39 Heat of formation + Delta-G solvation = 99.054042 kcal Electronic energy + Delta-G solvation = -21800.048885 eV Core-core repulsion = 18422.740867 eV Total energy + Delta-G solvation = -3377.308018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.97654 -39.93471 -37.09541 -35.64960 -33.86963 -33.60707 -31.72908 -31.23576 -30.31669 -28.65888 -26.24120 -23.79578 -22.88915 -22.48163 -22.25841 -20.26777 -18.72443 -17.92948 -17.41863 -16.87528 -16.45122 -16.24874 -15.95612 -15.37802 -15.01831 -14.60333 -13.85590 -13.61829 -13.39038 -13.17782 -12.82133 -12.72840 -12.32482 -12.03620 -11.82881 -11.75319 -11.43580 -10.98915 -10.75091 -10.69621 -10.64542 -10.49967 -10.21017 -9.85151 -9.62458 -9.29203 -9.07743 -8.78601 -8.47229 -8.22801 -6.11607 -4.17635 1.07451 1.62612 2.53723 2.58142 2.99814 3.24421 3.25059 3.30092 3.33261 4.16593 4.34595 4.37079 4.76851 4.80425 5.17115 5.27178 5.32950 5.64731 5.65832 5.78385 5.89846 6.02264 6.05771 6.17004 6.29838 6.51665 6.73344 6.89247 6.89893 6.98199 7.12193 7.22707 7.53982 7.63941 7.80719 7.92968 8.18776 8.30686 8.41655 8.85434 9.48107 10.94032 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.003535 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.815879 B = 7918.211486 C = 8073.184256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.591 5.591 13 C 0.500 3.500 14 O -0.540 6.540 15 C 0.122 3.878 16 N -0.183 5.183 17 N 0.025 4.975 18 N -0.345 5.345 19 C 0.442 3.558 20 N -0.814 5.814 21 N -0.343 5.343 22 C 0.098 3.902 23 C -0.127 4.127 24 H 0.262 0.738 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.418 0.582 33 H 0.418 0.582 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -11.362 -8.689 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.324 5.324 13 C 0.285 3.715 14 O -0.417 6.417 15 C -0.004 4.004 16 N -0.096 5.096 17 N 0.030 4.970 18 N -0.227 5.227 19 C 0.068 3.932 20 N -0.373 5.373 21 N -0.194 5.194 22 C -0.024 4.024 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.250 0.750 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.930 -11.554 -8.057 14.387 hybrid contribution 1.004 0.980 -0.672 1.556 sum -1.927 -10.573 -8.729 13.846 Atomic orbital electron populations 1.69805 1.05840 1.26700 1.50770 1.24947 0.94890 0.99079 0.94953 0.86665 0.79647 0.83084 0.78670 1.20314 1.21273 1.20285 1.21156 0.92964 0.90513 1.50541 0.92712 1.18632 0.92619 0.91768 0.93927 1.22024 0.98966 0.93968 1.01245 1.21776 0.91617 0.99991 0.87481 1.48214 1.36334 1.20290 1.27567 1.20238 0.84927 0.83078 0.83306 1.90744 1.40681 1.36070 1.74219 1.21947 1.02319 0.83877 0.92234 1.52449 1.26914 1.09970 1.20261 1.78277 1.14132 0.89753 1.14802 1.75197 1.16782 1.24782 1.05935 1.21624 0.92171 0.88095 0.91334 1.40875 1.49141 1.15909 1.31380 1.78907 1.18875 1.16671 1.04971 1.22105 0.91746 0.87652 1.00864 1.21988 1.00242 0.94392 0.99905 0.92840 0.95283 0.91881 0.92845 0.91682 0.90240 0.84076 0.84010 0.75025 0.75113 0.91604 0.91032 0.87382 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 11.30 55.43 0.63 -22.70 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.09 8.56 -34.44 -0.29 -13.38 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.09 2.07 -91.73 -0.19 0.90 16 10 C -0.12 -2.39 5.30 -26.61 -0.14 -2.53 16 11 C 0.11 1.93 6.44 -3.71 -0.02 1.90 16 12 N -0.59 -9.50 2.98 -173.03 -0.52 -10.02 16 13 C 0.50 8.09 7.77 -10.98 -0.09 8.01 16 14 O -0.54 -10.84 15.84 5.55 0.09 -10.75 16 15 C 0.12 1.50 5.58 -5.20 -0.03 1.47 16 16 N -0.18 -2.75 3.83 -11.66 -0.04 -2.80 16 17 N 0.03 0.40 13.24 60.35 0.80 1.20 16 18 N -0.34 -5.31 12.32 30.02 0.37 -4.94 16 19 C 0.44 6.13 9.63 -320.88 -3.09 3.04 16 20 N -0.81 -7.11 9.13 30.04 0.27 -6.84 16 21 N -0.34 -5.29 12.79 30.03 0.38 -4.90 16 22 C 0.10 1.48 6.32 -3.93 -0.02 1.46 16 23 C -0.13 -2.52 5.14 -26.83 -0.14 -2.66 16 24 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 30 H 0.14 1.25 7.96 -51.93 -0.41 0.83 16 31 H 0.14 1.45 7.68 -51.93 -0.40 1.06 16 32 H 0.42 2.60 8.96 -40.82 -0.37 2.24 16 33 H 0.42 2.77 8.96 -40.82 -0.37 2.40 16 34 H 0.07 0.76 5.93 -51.93 -0.31 0.45 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.11 2.42 6.03 -51.93 -0.31 2.11 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -32.18 311.80 -7.06 -39.23 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.61 Total: 2.91 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -4.11 Total: -0.27 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 1.89 Total: -50.99 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.18 -7.06 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611466607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.287 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds