Wall clock time and date at job start Tue Mar 31 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37753 * 120.01902 * 2 1 4 4 C 1.38590 * 120.37119 * 180.02562 * 3 2 1 5 5 C 1.38140 * 120.39531 * 0.29729 * 4 3 2 6 6 F 1.35095 * 119.98537 * 179.69822 * 5 4 3 7 7 C 1.39118 * 120.02240 * 359.45231 * 5 4 3 8 8 N 1.39030 * 120.17962 * 180.24849 * 7 5 4 9 9 C 1.39751 * 120.01785 * 180.02562 * 2 1 3 10 10 C 1.47436 * 120.19412 * 359.97438 * 9 2 1 11 11 O 1.21602 * 120.00425 * 90.00446 * 10 9 2 12 12 N 1.34777 * 119.99954 * 269.99593 * 10 9 2 13 13 C 1.46507 * 120.00153 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.47221 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47388 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47534 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00118 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00156 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00160 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47323 * 90.00320 * 20 18 16 22 22 H 1.48508 * 109.46998 * 210.00105 * 20 18 16 23 23 H 1.48500 * 109.46883 * 329.99667 * 20 18 16 24 24 H 1.08999 * 109.47303 * 90.00015 * 1 2 3 25 25 H 1.08995 * 109.47004 * 209.99900 * 1 2 3 26 26 H 1.09000 * 109.47435 * 330.00012 * 1 2 3 27 27 H 1.08004 * 119.81301 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.79941 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00205 * 180.27443 * 8 7 5 30 30 H 0.97001 * 119.99988 * 0.27740 * 8 7 5 31 31 H 0.96996 * 119.99731 * 0.02562 * 12 10 9 32 32 H 1.08997 * 109.46975 * 300.00654 * 13 12 10 33 33 H 1.09006 * 109.46257 * 60.00523 * 13 12 10 34 34 H 1.09001 * 109.47301 * 300.00595 * 14 13 12 35 35 H 1.09001 * 109.47116 * 60.00213 * 14 13 12 36 36 H 1.09009 * 109.46892 * 300.00053 * 15 14 13 37 37 H 1.09001 * 109.47157 * 59.99823 * 15 14 13 38 38 H 0.97004 * 119.99780 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1927 0.0000 4 6 3.5820 1.2013 -0.0005 5 6 4.2882 0.0141 -0.0073 6 9 5.6390 0.0321 -0.0139 7 6 3.6089 -1.2000 -0.0020 8 7 4.3165 -2.3968 -0.0036 9 6 2.2061 -1.2101 -0.0005 10 6 1.4736 -2.4896 -0.0005 11 8 1.1712 -3.0172 -1.0536 12 7 1.1394 -3.0748 1.1667 13 6 0.4110 -4.3460 1.1667 14 6 0.1579 -4.7886 2.6091 15 6 -0.6021 -6.1165 2.6092 16 6 -0.8520 -6.5522 4.0300 17 1 -0.5040 -5.9428 4.8509 18 6 -1.5259 -7.7284 4.2819 19 7 -1.9502 -8.4703 3.2823 20 14 -1.8363 -8.2681 6.0432 21 1 -3.1334 -7.7153 6.5090 22 1 -1.8791 -9.7513 6.1061 23 1 -0.7431 -7.7671 6.9144 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6534 2.1265 0.0004 28 1 4.1129 2.1418 -0.0001 29 1 3.8402 -3.2418 -0.0039 30 1 5.2865 -2.3868 -0.0042 31 1 1.3804 -2.6538 2.0067 32 1 -0.5420 -4.2186 0.6535 33 1 1.0025 -5.1034 0.6523 34 1 1.1109 -4.9158 3.1228 35 1 -0.4336 -4.0310 3.1232 36 1 -1.5552 -5.9896 2.0955 37 1 -0.0103 -6.8739 2.0953 38 1 -2.4247 -9.2976 3.4597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001616716638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:27 Heat of formation + Delta-G solvation = -82.153442 kcal Electronic energy + Delta-G solvation = -21048.414979 eV Core-core repulsion = 17611.036502 eV Total energy + Delta-G solvation = -3437.378477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.00902 -40.45406 -38.39655 -35.45301 -35.29748 -33.36984 -32.43172 -31.18745 -29.49915 -27.12402 -26.60338 -24.21856 -22.74297 -21.67154 -20.80009 -20.18314 -18.10075 -17.91859 -16.94499 -16.48805 -16.14313 -15.80758 -15.51410 -15.30373 -15.10785 -14.50176 -14.48363 -13.98608 -13.77577 -13.64732 -13.26243 -12.55011 -12.32572 -12.26050 -12.01188 -11.88940 -11.81368 -11.71755 -10.93241 -10.89004 -10.78671 -10.63635 -10.03957 -9.91675 -9.43796 -9.16006 -8.91221 -8.88353 -8.40356 -7.85466 -6.04988 -4.08263 0.78948 1.14100 2.56189 3.17267 3.28727 3.35204 3.36703 3.38576 3.45700 4.10639 4.41548 4.44975 4.56452 4.80338 4.97202 5.11591 5.30926 5.44528 5.46967 5.57777 5.59169 5.68285 5.70461 5.88533 6.01090 6.09157 6.23902 6.37718 6.48509 6.53294 6.75837 6.94425 7.03318 7.32462 7.59282 7.59779 7.71429 7.93377 8.24708 8.34809 8.98376 9.56243 11.06238 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.003075 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.398686 B = 9103.560463 C = 9352.678586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.007 4.007 3 C -0.158 4.158 4 C -0.085 4.085 5 C 0.004 3.996 6 F -0.143 7.143 7 C 0.232 3.768 8 N -0.860 5.860 9 C -0.187 4.187 10 C 0.562 3.438 11 O -0.533 6.533 12 N -0.717 5.717 13 C 0.114 3.886 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.407 0.593 30 H 0.405 0.595 31 H 0.401 0.599 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.771 19.745 -5.956 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.008 4.008 3 C -0.178 4.178 4 C -0.104 4.104 5 C -0.020 4.020 6 F -0.122 7.122 7 C 0.122 3.878 8 N -0.398 5.398 9 C -0.196 4.196 10 C 0.347 3.653 11 O -0.410 6.410 12 N -0.368 5.368 13 C -0.008 4.008 14 C -0.159 4.159 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.237 0.763 30 H 0.235 0.765 31 H 0.235 0.765 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.492 19.158 -6.753 22.863 hybrid contribution 0.415 -0.537 1.341 1.503 sum 10.908 18.621 -5.412 22.249 Atomic orbital electron populations 1.20918 0.90241 1.03515 1.03352 1.19727 0.96230 0.90927 0.93912 1.20553 0.92823 0.97633 1.06799 1.21005 0.94714 0.96510 0.98209 1.16913 0.76901 0.92812 1.15383 1.91442 1.28513 1.97182 1.95056 1.17520 0.90149 0.86135 0.93962 1.42310 1.09575 1.05186 1.82739 1.19131 0.90761 0.94374 1.15313 1.17984 0.79222 0.83784 0.84309 1.90830 1.54353 1.64485 1.31292 1.46354 1.57710 1.24676 1.08037 1.21719 0.96012 0.83154 0.99957 1.21893 1.00943 1.00911 0.92130 1.19027 0.95112 0.89835 0.97372 1.21196 1.36364 1.06285 0.92296 0.92643 1.25028 0.95699 0.96611 0.97099 1.69965 1.38514 1.14102 1.30679 0.86582 0.78628 0.77763 0.84952 1.20627 1.21199 1.19882 0.90137 0.91023 0.90572 0.84776 0.84529 0.76349 0.76520 0.76518 0.91519 0.91645 0.92714 0.92617 0.96253 0.96291 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.62 36.00 0.35 -0.84 16 2 C -0.01 -0.07 5.91 -104.24 -0.62 -0.69 16 3 C -0.16 -1.38 9.67 -39.63 -0.38 -1.77 16 4 C -0.08 -0.76 10.00 -39.49 -0.40 -1.16 16 5 C 0.00 0.04 7.30 -39.29 -0.29 -0.25 16 6 F -0.14 -1.57 16.63 2.25 0.04 -1.53 16 7 C 0.23 2.71 6.77 -83.50 -0.57 2.15 16 8 N -0.86 -8.96 8.99 32.60 0.29 -8.66 16 9 C -0.19 -2.35 5.64 -104.81 -0.59 -2.94 16 10 C 0.56 8.29 4.46 -12.51 -0.06 8.23 16 11 O -0.53 -9.90 17.11 5.28 0.09 -9.81 16 12 N -0.72 -9.90 5.55 -61.38 -0.34 -10.24 16 13 C 0.11 1.91 5.67 -4.04 -0.02 1.88 16 14 C -0.12 -2.28 5.27 -26.74 -0.14 -2.42 16 15 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 16 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.79 7.08 -51.93 -0.37 0.42 16 26 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 28 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.41 4.46 7.68 -40.82 -0.31 4.15 16 30 H 0.41 3.46 8.31 -40.82 -0.34 3.13 16 31 H 0.40 4.72 8.46 -40.82 -0.35 4.37 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -31.97 331.06 -7.61 -39.58 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.13 Total: 5.75 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.26 Total: -10.51 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.69 Total: -44.69 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.97 -7.61 -39.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616716638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.577 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds