Wall clock time and date at job start Tue Mar 31 2020 01:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37867 * 119.93842 * 2 1 4 4 C 1.39627 * 119.87815 * 180.02562 * 3 2 1 5 5 C 1.47726 * 120.11928 * 179.97438 * 4 3 2 6 6 O 1.21572 * 119.99723 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00121 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99772 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46748 * 180.02562 * 8 7 5 10 10 N 1.46507 * 109.46798 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99469 * 269.99319 * 10 9 8 12 12 C 1.36928 * 120.00164 * 89.99714 * 10 9 8 13 13 H 1.08003 * 120.00443 * 20.36440 * 12 10 9 14 14 C 1.38819 * 120.00082 * 200.36226 * 12 10 9 15 15 N 1.31614 * 119.99907 * 14.98389 * 14 12 10 16 16 Si 1.86793 * 120.00003 * 194.98906 * 14 12 10 17 17 H 1.48495 * 109.47256 * 85.00231 * 16 14 12 18 18 H 1.48502 * 109.47130 * 204.99854 * 16 14 12 19 19 H 1.48504 * 109.47386 * 324.99680 * 16 14 12 20 20 C 1.39672 * 119.76372 * 359.97438 * 4 3 2 21 21 C 1.37816 * 119.88200 * 359.97438 * 20 4 3 22 22 C 1.38636 * 119.94204 * 179.97438 * 2 1 3 23 23 F 1.35096 * 119.88062 * 359.72298 * 22 2 1 24 24 H 1.09003 * 109.47179 * 270.02076 * 1 2 3 25 25 H 1.09000 * 109.47714 * 30.01955 * 1 2 3 26 26 H 1.08999 * 109.47270 * 150.02345 * 1 2 3 27 27 H 1.08002 * 120.05959 * 359.97438 * 3 2 1 28 28 H 0.96998 * 119.99601 * 0.02562 * 7 5 4 29 29 H 1.09002 * 109.46842 * 299.99489 * 8 7 5 30 30 H 1.08992 * 109.47426 * 59.99877 * 8 7 5 31 31 H 1.09002 * 109.46655 * 299.99142 * 9 8 7 32 32 H 1.08999 * 109.47563 * 59.99899 * 9 8 7 33 33 H 1.09005 * 109.46524 * 95.09917 * 11 10 9 34 34 H 1.09005 * 109.46832 * 215.09659 * 11 10 9 35 35 H 1.08996 * 109.47174 * 335.09831 * 11 10 9 36 36 H 0.97001 * 120.00399 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.06009 * 180.02562 * 20 4 3 38 38 H 1.07996 * 119.94299 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1947 0.0000 4 6 3.5913 1.1932 -0.0005 5 6 4.3339 2.4703 -0.0011 6 8 3.7293 3.5250 -0.0006 7 7 5.6817 2.4661 -0.0011 8 6 6.4180 3.7325 -0.0011 9 6 7.9214 3.4482 -0.0018 10 7 8.6579 4.7147 -0.0011 11 6 9.0258 5.3487 -1.2697 12 6 9.0023 5.3059 1.1849 13 1 9.0380 4.7187 2.0907 14 6 9.3058 6.6599 1.2233 15 7 8.9853 7.4351 0.2091 16 14 10.1691 7.3817 2.7142 17 1 11.6363 7.2024 2.5716 18 1 9.8550 8.8296 2.8153 19 1 9.7024 6.6872 3.9410 20 6 4.2834 -0.0200 -0.0005 21 6 3.5857 -1.2085 0.0005 22 6 2.1989 -1.2013 0.0005 23 9 1.5198 -2.3692 0.0067 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6550 2.1300 -0.0004 28 1 6.1640 1.6245 -0.0011 29 1 6.1565 4.3048 -0.8912 30 1 6.1565 4.3049 0.8888 31 1 8.1832 2.8757 0.8881 32 1 8.1827 2.8760 -0.8919 33 1 8.2718 6.0888 -1.5380 34 1 9.9940 5.8381 -1.1638 35 1 9.0852 4.5908 -2.0508 36 1 9.1977 8.3812 0.2356 37 1 5.3634 -0.0267 -0.0005 38 1 4.1198 -2.1471 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663262657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:09 Heat of formation + Delta-G solvation = -37.826801 kcal Electronic energy + Delta-G solvation = -20839.277597 eV Core-core repulsion = 17403.821268 eV Total energy + Delta-G solvation = -3435.456329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.25340 -40.17781 -38.33967 -36.07171 -34.32973 -33.21094 -31.46939 -30.91190 -28.27267 -27.15334 -25.89265 -24.29357 -22.70676 -22.50751 -20.70135 -20.04598 -18.01015 -17.44037 -16.80214 -16.74196 -16.03466 -15.45286 -15.06809 -14.80673 -14.69703 -14.00807 -13.84247 -13.77034 -13.59211 -13.54576 -13.22468 -12.91339 -12.51328 -12.32533 -12.25273 -12.00877 -11.34320 -11.22936 -10.90499 -10.86542 -10.61451 -10.32300 -10.01347 -9.95727 -9.75684 -9.29117 -8.99398 -8.66020 -8.57091 -6.87282 -5.76567 -3.21911 0.47272 0.89065 2.70799 3.31400 3.38953 3.44452 3.45599 3.62481 3.86255 4.31074 4.40782 4.47800 4.64967 4.84564 4.89914 5.19252 5.27678 5.36593 5.39925 5.59241 5.63652 5.71171 5.76555 5.83449 5.90241 5.91630 6.04979 6.23607 6.48896 6.62198 6.67735 6.69562 6.93002 7.33106 7.68160 7.72311 7.78194 8.32859 8.40388 9.18146 9.80952 10.28180 11.28550 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035219 B = 0.002932 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.831191 B = 9547.555071 C = 9693.869569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.128 4.128 3 C -0.036 4.036 4 C -0.133 4.133 5 C 0.550 3.450 6 O -0.536 6.536 7 N -0.717 5.717 8 C 0.093 3.907 9 C 0.144 3.856 10 N -0.596 5.596 11 C 0.161 3.839 12 C -0.262 4.262 13 H 0.071 0.929 14 C 0.003 3.997 15 N -0.904 5.904 16 Si 0.907 3.093 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.279 1.279 20 C -0.065 4.065 21 C -0.156 4.156 22 C 0.114 3.886 23 F -0.136 7.136 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.394 0.606 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.046 0.954 35 H -0.001 1.001 36 H 0.254 0.746 37 H 0.138 0.862 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.129 -18.351 -1.995 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.129 4.129 3 C -0.055 4.055 4 C -0.136 4.136 5 C 0.336 3.664 6 O -0.414 6.414 7 N -0.369 5.369 8 C -0.032 4.032 9 C 0.015 3.985 10 N -0.318 5.318 11 C 0.016 3.984 12 C -0.391 4.391 13 H 0.089 0.911 14 C -0.196 4.196 15 N -0.548 5.548 16 Si 0.737 3.263 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.084 4.084 21 C -0.175 4.175 22 C 0.094 3.906 23 F -0.114 7.114 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.164 0.836 28 H 0.228 0.772 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.018 0.982 36 H 0.064 0.936 37 H 0.156 0.844 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.489 -17.390 -2.029 21.505 hybrid contribution 0.537 -0.097 0.779 0.951 sum -11.951 -17.487 -1.251 21.218 Atomic orbital electron populations 1.20744 0.89662 1.03583 1.03086 1.19918 0.97416 0.91543 1.03978 1.21089 0.92720 0.97844 0.93797 1.20191 0.94378 0.93624 1.05412 1.18163 0.82644 0.88332 0.77309 1.90799 1.68430 1.32409 1.49784 1.46131 1.05701 1.10957 1.74072 1.22607 0.94124 0.83855 1.02632 1.21000 0.88215 0.90094 0.99189 1.43953 1.61462 1.22678 1.03721 1.20860 1.00085 0.93471 0.83969 1.19224 1.41007 0.91400 0.87512 0.91097 1.25014 1.00910 0.95897 0.97743 1.70084 1.48751 1.04617 1.31394 0.86237 0.79607 0.78193 0.82273 1.21391 1.21695 1.20494 1.21197 1.00316 0.90752 0.96093 1.21052 0.92067 0.99863 1.04501 1.17772 0.90033 0.80947 1.01815 1.91490 1.80188 1.46146 1.93600 0.90577 0.90557 0.91087 0.83574 0.77154 0.91946 0.91065 0.93256 0.93902 0.95076 0.93562 0.98198 0.93589 0.84386 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.83 36.00 0.35 -0.52 16 2 C -0.13 -1.27 5.88 -104.61 -0.62 -1.88 16 3 C -0.04 -0.41 9.24 -39.20 -0.36 -0.77 16 4 C -0.13 -1.62 5.87 -104.97 -0.62 -2.24 16 5 C 0.55 8.72 7.77 -12.38 -0.10 8.63 16 6 O -0.54 -10.80 16.34 5.30 0.09 -10.71 16 7 N -0.72 -10.60 5.51 -61.29 -0.34 -10.94 16 8 C 0.09 1.78 6.00 -4.04 -0.02 1.76 16 9 C 0.14 2.76 5.82 -4.04 -0.02 2.74 16 10 N -0.60 -14.69 2.93 -181.11 -0.53 -15.22 16 11 C 0.16 3.91 9.02 59.85 0.54 4.45 16 12 C -0.26 -7.11 9.68 -15.06 -0.15 -7.26 16 13 H 0.07 1.87 7.86 -52.48 -0.41 1.46 16 14 C 0.00 0.09 5.06 -17.43 -0.09 0.00 16 15 N -0.90 -26.34 10.67 55.49 0.59 -25.75 16 16 Si 0.91 21.79 29.58 -169.99 -5.03 16.76 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 C -0.06 -0.61 9.54 -39.20 -0.37 -0.98 16 21 C -0.16 -1.36 10.01 -39.57 -0.40 -1.76 16 22 C 0.11 1.12 7.25 -39.27 -0.28 0.84 16 23 F -0.14 -1.35 16.46 2.25 0.04 -1.32 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.50 7.63 -51.93 -0.40 0.11 16 27 H 0.15 1.70 7.65 -52.49 -0.40 1.29 16 28 H 0.39 4.35 6.50 -40.82 -0.27 4.08 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 31 H 0.05 0.89 8.03 -51.93 -0.42 0.48 16 32 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 33 H 0.03 0.82 7.40 -51.93 -0.38 0.44 16 34 H 0.05 1.20 7.21 -51.93 -0.37 0.83 16 35 H 0.00 -0.01 7.84 -51.93 -0.41 -0.42 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.14 0.95 6.40 -52.48 -0.34 0.62 16 38 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -32.32 327.03 -7.43 -39.75 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.05 Total: -0.50 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.13 Total: 3.00 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.28 Total: -51.91 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.32 -7.43 -39.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663262657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.924 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds