Wall clock time and date at job start Tue Mar 31 2020 01:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37867 * 119.93842 * 2 1 4 4 C 1.39627 * 119.87815 * 180.02562 * 3 2 1 5 5 C 1.47726 * 120.11928 * 179.97438 * 4 3 2 6 6 O 1.21572 * 119.99723 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00121 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99772 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46748 * 180.02562 * 8 7 5 10 10 N 1.46507 * 109.46798 * 180.02562 * 9 8 7 11 11 C 1.46504 * 119.99469 * 269.99319 * 10 9 8 12 12 C 1.36928 * 120.00164 * 89.99714 * 10 9 8 13 13 H 1.08003 * 120.00443 * 20.36440 * 12 10 9 14 14 C 1.38819 * 120.00082 * 200.36226 * 12 10 9 15 15 N 1.31614 * 119.99907 * 14.98389 * 14 12 10 16 16 Si 1.86793 * 120.00003 * 194.98906 * 14 12 10 17 17 H 1.48495 * 109.47256 * 85.00231 * 16 14 12 18 18 H 1.48502 * 109.47130 * 204.99854 * 16 14 12 19 19 H 1.48504 * 109.47386 * 324.99680 * 16 14 12 20 20 C 1.39672 * 119.76372 * 359.97438 * 4 3 2 21 21 C 1.37816 * 119.88200 * 359.97438 * 20 4 3 22 22 C 1.38636 * 119.94204 * 179.97438 * 2 1 3 23 23 F 1.35096 * 119.88062 * 359.72298 * 22 2 1 24 24 H 1.09003 * 109.47179 * 270.02076 * 1 2 3 25 25 H 1.09000 * 109.47714 * 30.01955 * 1 2 3 26 26 H 1.08999 * 109.47270 * 150.02345 * 1 2 3 27 27 H 1.08002 * 120.05959 * 359.97438 * 3 2 1 28 28 H 0.96998 * 119.99601 * 0.02562 * 7 5 4 29 29 H 1.09002 * 109.46842 * 299.99489 * 8 7 5 30 30 H 1.08992 * 109.47426 * 59.99877 * 8 7 5 31 31 H 1.09002 * 109.46655 * 299.99142 * 9 8 7 32 32 H 1.08999 * 109.47563 * 59.99899 * 9 8 7 33 33 H 1.09005 * 109.46524 * 95.09917 * 11 10 9 34 34 H 1.09005 * 109.46832 * 215.09659 * 11 10 9 35 35 H 1.08996 * 109.47174 * 335.09831 * 11 10 9 36 36 H 0.97001 * 120.00399 * 180.02562 * 15 14 12 37 37 H 1.08004 * 120.06009 * 180.02562 * 20 4 3 38 38 H 1.07996 * 119.94299 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1947 0.0000 4 6 3.5913 1.1932 -0.0005 5 6 4.3339 2.4703 -0.0011 6 8 3.7293 3.5250 -0.0006 7 7 5.6817 2.4661 -0.0011 8 6 6.4180 3.7325 -0.0011 9 6 7.9214 3.4482 -0.0018 10 7 8.6579 4.7147 -0.0011 11 6 9.0258 5.3487 -1.2697 12 6 9.0023 5.3059 1.1849 13 1 9.0380 4.7187 2.0907 14 6 9.3058 6.6599 1.2233 15 7 8.9853 7.4351 0.2091 16 14 10.1691 7.3817 2.7142 17 1 11.6363 7.2024 2.5716 18 1 9.8550 8.8296 2.8153 19 1 9.7024 6.6872 3.9410 20 6 4.2834 -0.0200 -0.0005 21 6 3.5857 -1.2085 0.0005 22 6 2.1989 -1.2013 0.0005 23 9 1.5198 -2.3692 0.0067 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6550 2.1300 -0.0004 28 1 6.1640 1.6245 -0.0011 29 1 6.1565 4.3048 -0.8912 30 1 6.1565 4.3049 0.8888 31 1 8.1832 2.8757 0.8881 32 1 8.1827 2.8760 -0.8919 33 1 8.2718 6.0888 -1.5380 34 1 9.9940 5.8381 -1.1638 35 1 9.0852 4.5908 -2.0508 36 1 9.1977 8.3812 0.2356 37 1 5.3634 -0.0267 -0.0005 38 1 4.1198 -2.1471 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663262657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:08 Heat of formation + Delta-G solvation = -58.211184 kcal Electronic energy + Delta-G solvation = -20840.161530 eV Core-core repulsion = 17403.821268 eV Total energy + Delta-G solvation = -3436.340263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.02013 -41.27400 -39.38879 -37.83684 -35.85477 -34.07732 -33.22221 -31.95412 -29.78787 -27.99889 -27.86338 -25.65903 -24.08878 -23.31837 -22.40248 -21.27025 -18.93149 -18.75209 -18.37667 -17.73730 -16.89326 -16.81891 -16.54791 -16.44732 -15.74412 -15.47924 -15.18289 -14.98532 -14.52193 -14.41697 -14.27007 -14.18829 -14.12105 -13.76056 -13.14730 -12.96322 -12.85925 -12.79694 -12.63971 -12.46380 -12.09341 -12.05180 -11.99352 -11.77345 -11.16153 -10.65556 -10.21864 -10.03144 -9.70057 -8.89006 -7.85045 -5.32491 -0.40462 0.14171 1.47728 1.48478 1.56950 1.67078 2.07077 2.52614 2.64628 3.10006 3.29664 3.56832 3.59359 3.74038 3.84637 4.08336 4.14210 4.24244 4.29638 4.54813 4.66320 4.70507 4.71002 4.83891 4.84660 5.00465 5.06312 5.11416 5.12976 5.14334 5.24407 5.32109 5.41877 5.63142 5.72221 5.73827 6.29946 6.52707 7.12019 7.18743 7.83917 8.25424 9.18676 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.035219 B = 0.002932 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.831191 B = 9547.555071 C = 9693.869569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.130 4.130 3 C -0.047 4.047 4 C -0.150 4.150 5 C 0.549 3.451 6 O -0.589 6.589 7 N -0.701 5.701 8 C 0.114 3.886 9 C 0.146 3.854 10 N -0.614 5.614 11 C 0.173 3.827 12 C -0.267 4.267 13 H 0.078 0.922 14 C -0.056 4.056 15 N -0.939 5.939 16 Si 0.970 3.030 17 H -0.282 1.282 18 H -0.299 1.299 19 H -0.268 1.268 20 C -0.054 4.054 21 C -0.147 4.147 22 C 0.111 3.889 23 F -0.135 7.135 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.135 0.865 28 H 0.416 0.584 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.078 0.922 33 H -0.001 1.001 34 H 0.020 0.980 35 H 0.039 0.961 36 H 0.248 0.752 37 H 0.167 0.833 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.769 -21.576 -1.559 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.131 4.131 3 C -0.067 4.067 4 C -0.154 4.154 5 C 0.337 3.663 6 O -0.471 6.471 7 N -0.354 5.354 8 C -0.013 4.013 9 C 0.019 3.981 10 N -0.337 5.337 11 C 0.028 3.972 12 C -0.397 4.397 13 H 0.096 0.904 14 C -0.251 4.251 15 N -0.585 5.585 16 Si 0.798 3.202 17 H -0.208 1.208 18 H -0.226 1.226 19 H -0.193 1.193 20 C -0.072 4.072 21 C -0.165 4.165 22 C 0.092 3.908 23 F -0.113 7.113 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.152 0.848 28 H 0.255 0.745 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.017 0.983 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.185 0.815 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.122 -20.702 -1.587 24.043 hybrid contribution 0.337 0.756 0.617 1.032 sum -11.786 -19.947 -0.969 23.189 Atomic orbital electron populations 1.20812 0.88302 1.04239 1.03833 1.20069 0.98521 0.91074 1.03447 1.21069 0.92740 0.98156 0.94689 1.19932 0.94423 0.92729 1.08274 1.18733 0.82655 0.89094 0.75795 1.90773 1.69435 1.34697 1.52170 1.45779 1.05500 1.10428 1.73668 1.22013 0.94726 0.85024 0.99535 1.21169 0.87098 0.88143 1.01722 1.44206 1.62537 1.23917 1.03027 1.20621 0.97621 0.93847 0.85149 1.19611 1.39827 0.91641 0.88607 0.90416 1.25810 1.02234 0.96564 1.00484 1.70260 1.50450 1.04410 1.33394 0.85238 0.78576 0.76800 0.79560 1.20817 1.22581 1.19325 1.21440 1.01666 0.89565 0.94543 1.21373 0.91588 1.00805 1.02780 1.17976 0.90728 0.80786 1.01348 1.91498 1.80310 1.46002 1.93517 0.89739 0.90032 0.90332 0.84762 0.74495 0.94566 0.94965 0.91419 0.90375 0.98271 0.96088 0.94263 0.94300 0.81524 0.80950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.83 71.23 0.70 -0.90 16 2 C -0.13 -2.39 5.88 -19.86 -0.12 -2.51 16 3 C -0.05 -1.07 9.24 22.52 0.21 -0.86 16 4 C -0.15 -3.49 5.87 -20.09 -0.12 -3.61 16 5 C 0.55 17.34 7.77 86.75 0.67 18.02 16 6 O -0.59 -24.71 16.34 -3.94 -0.06 -24.77 16 7 N -0.70 -19.77 5.51 -466.09 -2.57 -22.33 16 8 C 0.11 4.35 6.00 86.38 0.52 4.86 16 9 C 0.15 5.30 5.82 86.38 0.50 5.80 16 10 N -0.61 -29.95 2.93 -726.89 -2.13 -32.08 16 11 C 0.17 8.42 9.02 127.77 1.15 9.57 16 12 C -0.27 -14.42 9.68 84.04 0.81 -13.61 16 13 H 0.08 4.01 7.86 -2.91 -0.02 3.99 16 14 C -0.06 -3.14 5.06 84.86 0.43 -2.71 16 15 N -0.94 -56.28 10.67 21.65 0.23 -56.05 16 16 Si 0.97 45.17 29.58 68.60 2.03 47.20 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 C -0.05 -0.82 9.54 22.52 0.21 -0.61 16 21 C -0.15 -1.99 10.01 22.27 0.22 -1.77 16 22 C 0.11 1.88 7.25 22.47 0.16 2.05 16 23 F -0.13 -2.30 16.46 44.97 0.74 -1.56 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 26 H 0.08 0.97 7.63 -2.39 -0.02 0.95 16 27 H 0.13 3.27 7.65 -2.91 -0.02 3.25 16 28 H 0.42 7.82 6.50 -92.71 -0.60 7.22 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 31 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 32 H 0.08 2.33 7.86 -2.39 -0.02 2.31 16 33 H 0.00 -0.06 7.40 -2.38 -0.02 -0.08 16 34 H 0.02 1.09 7.21 -2.38 -0.02 1.07 16 35 H 0.04 1.57 7.84 -2.39 -0.02 1.55 16 36 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.17 1.51 6.40 -2.91 -0.02 1.49 16 38 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -72.65 327.03 4.08 -68.57 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.47 Total: 7.30 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 5.36 Total: 13.73 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -4.46 Total: -110.46 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.06 Total: -24.77 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.74 Total: -1.56 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -72.65 4.08 -68.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663262657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.362 kcal (2) G-P(sol) polarization free energy of solvation -72.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds