Wall clock time and date at job start Tue Mar 31 2020 01:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47446 * 2 1 4 4 N 1.46495 * 109.47202 * 120.00409 * 2 1 3 5 5 C 1.46500 * 119.99948 * 295.64361 * 4 2 1 6 6 C 1.50700 * 109.47097 * 269.99916 * 5 4 2 7 7 H 1.07999 * 119.99968 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99809 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00100 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00292 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47272 * 89.99761 * 10 8 6 12 12 H 1.48506 * 109.47217 * 209.99905 * 10 8 6 13 13 H 1.48496 * 109.47104 * 329.99957 * 10 8 6 14 14 C 1.34773 * 120.00140 * 115.64190 * 4 2 1 15 15 O 1.21593 * 120.00075 * 187.34552 * 14 4 2 16 16 N 1.34779 * 119.99883 * 7.35031 * 14 4 2 17 17 C 1.40068 * 119.99817 * 189.19696 * 16 14 4 18 18 C 1.38844 * 120.04378 * 334.05613 * 17 16 14 19 19 C 1.38118 * 119.95324 * 180.25522 * 18 17 16 20 20 C 1.38478 * 120.04239 * 359.46849 * 19 18 17 21 21 F 1.35101 * 119.95257 * 180.28095 * 20 19 18 22 22 C 1.38464 * 120.08774 * 0.25017 * 20 19 18 23 23 C 1.38121 * 120.04827 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47068 * 305.37869 * 1 2 3 25 25 H 1.09003 * 109.47127 * 65.37570 * 1 2 3 26 26 H 1.08991 * 109.47255 * 185.37911 * 1 2 3 27 27 H 1.09002 * 109.46901 * 240.00356 * 2 1 3 28 28 H 1.08992 * 109.47201 * 183.54766 * 3 2 1 29 29 H 1.08998 * 109.47108 * 303.55318 * 3 2 1 30 30 H 1.09000 * 109.46930 * 63.54649 * 3 2 1 31 31 H 1.09000 * 109.47144 * 30.00099 * 5 4 2 32 32 H 1.08996 * 109.47113 * 149.99504 * 5 4 2 33 33 H 0.97003 * 120.00361 * 179.97438 * 9 8 6 34 34 H 0.96999 * 120.00376 * 9.19885 * 16 14 4 35 35 H 1.07995 * 120.02357 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.97987 * 179.74865 * 19 18 17 37 37 H 1.08007 * 119.97615 * 180.02562 * 22 20 19 38 38 H 1.07995 * 120.02253 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7449 -0.1370 2.5246 6 6 2.8587 0.7988 2.9178 7 1 3.6876 0.9642 2.2456 8 6 2.8195 1.4437 4.1358 9 7 3.7917 2.2600 4.4793 10 14 1.3861 1.1570 5.2988 11 1 1.6963 0.0137 6.1943 12 1 1.1586 2.3770 6.1144 13 1 0.1639 0.8523 4.5124 14 6 2.7192 -1.8354 1.0743 15 8 3.0093 -2.4789 2.0644 16 7 3.0985 -2.2668 -0.1449 17 6 3.6545 -3.5437 -0.2942 18 6 4.3069 -4.1470 0.7727 19 6 4.8590 -5.4039 0.6219 20 6 4.7527 -6.0671 -0.5892 21 9 5.2886 -7.2989 -0.7330 22 6 4.0974 -5.4696 -1.6526 23 6 3.5488 -4.2103 -1.5075 24 1 -0.3633 0.5950 0.8379 25 1 -0.3633 0.4282 -0.9342 26 1 -0.3633 -1.0230 0.0963 27 1 1.8933 -0.5138 -0.8900 28 1 3.1282 1.4431 -0.0636 29 1 1.6257 1.9744 -0.8564 30 1 1.7296 1.9376 0.9201 31 1 0.8018 0.4091 2.5035 32 1 1.6787 -0.9482 3.2496 33 1 3.7640 2.7140 5.3360 34 1 2.9865 -1.6931 -0.9190 35 1 4.3864 -3.6318 1.7185 36 1 5.3701 -5.8718 1.4502 37 1 4.0152 -5.9886 -2.5962 38 1 3.0375 -3.7449 -2.3371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004325262.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:40 Heat of formation + Delta-G solvation = -33.215389 kcal Electronic energy + Delta-G solvation = -21926.361607 eV Core-core repulsion = 18491.105244 eV Total energy + Delta-G solvation = -3435.256364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.76079 -40.49946 -38.51524 -36.29320 -34.44765 -32.72875 -31.27443 -30.96928 -29.32551 -27.47503 -26.81679 -23.35328 -22.99375 -21.99016 -21.48026 -19.09579 -18.27198 -17.46758 -17.08022 -16.87467 -15.92907 -15.49436 -15.14225 -14.78680 -14.38157 -14.11706 -13.81687 -13.65913 -13.41003 -13.18034 -12.91843 -12.69476 -12.51310 -12.32014 -12.00413 -11.79739 -11.49434 -11.13983 -11.09571 -10.97104 -10.58181 -10.43544 -10.21509 -10.10723 -9.53981 -9.26883 -8.99833 -8.61614 -8.05423 -7.63136 -6.11941 -4.10329 1.21825 1.32746 2.96843 3.26833 3.32804 3.35738 3.47039 3.86428 4.14196 4.36489 4.38420 4.80772 4.89437 5.01412 5.20109 5.27460 5.35702 5.40278 5.46918 5.61965 5.83309 5.92926 5.98468 6.09981 6.15096 6.22136 6.31515 6.42294 6.49368 6.59543 6.62322 6.85762 6.93377 7.14235 7.22329 7.39597 7.57701 8.35637 8.43586 8.90697 9.01333 9.48273 11.01011 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021734 B = 0.004626 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.993013 B = 6051.631999 C = 6814.436134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 C -0.158 4.158 4 N -0.596 5.596 5 C 0.229 3.771 6 C -0.527 4.527 7 H 0.076 0.924 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.704 3.296 15 O -0.568 6.568 16 N -0.691 5.691 17 C 0.172 3.828 18 C -0.111 4.111 19 C -0.130 4.130 20 C 0.061 3.939 21 F -0.148 7.148 22 C -0.133 4.133 23 C -0.136 4.136 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.174 0.826 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -9.135 -13.867 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 C -0.216 4.216 4 N -0.330 5.330 5 C 0.108 3.892 6 C -0.565 4.565 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.407 3.593 15 O -0.445 6.445 16 N -0.339 5.339 17 C 0.074 3.926 18 C -0.131 4.131 19 C -0.150 4.150 20 C 0.041 3.959 21 F -0.126 7.126 22 C -0.152 4.152 23 C -0.158 4.158 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.191 0.809 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.574 -9.396 -12.933 16.381 hybrid contribution -0.593 0.086 0.191 0.629 sum -4.167 -9.310 -12.743 16.323 Atomic orbital electron populations 1.22176 0.95367 1.02115 1.02348 1.20966 0.94211 0.94542 0.87060 1.22157 1.01608 0.94824 1.02976 1.47381 1.54558 1.22447 1.08661 1.19599 0.96896 0.94363 0.78334 1.21347 1.07092 1.24657 1.03412 0.90545 1.24829 0.95871 0.94765 0.97442 1.69889 1.32132 1.29087 1.22355 0.86907 0.83299 0.78045 0.81770 1.19911 1.21140 1.19086 1.15857 0.79216 0.81823 0.82432 1.90759 1.60401 1.56924 1.36411 1.42990 1.64809 1.15627 1.10485 1.17714 0.94841 0.85366 0.94646 1.21943 0.94957 0.94871 1.01363 1.21155 1.01669 0.95833 0.96316 1.17689 1.00879 0.81740 0.95607 1.91458 1.84481 1.40288 1.96419 1.20773 1.00206 0.95800 0.98447 1.20601 1.03257 0.94665 0.97228 0.91518 0.91937 0.92737 0.91500 0.92331 0.93062 0.89611 0.94898 0.94333 0.92565 0.75773 0.80924 0.84717 0.84870 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.15 37.16 0.34 -1.73 16 2 C 0.14 2.00 3.22 -67.93 -0.22 1.78 16 3 C -0.16 -2.43 8.50 37.16 0.32 -2.12 16 4 N -0.60 -11.48 2.38 -173.17 -0.41 -11.90 16 5 C 0.23 5.27 3.58 -5.19 -0.02 5.25 16 6 C -0.53 -14.18 8.30 -34.44 -0.29 -14.47 16 7 H 0.08 2.26 7.92 -52.49 -0.42 1.85 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -26.73 13.96 55.43 0.77 -25.95 16 10 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 14 C 0.70 13.84 8.16 -86.92 -0.71 13.13 16 15 O -0.57 -13.18 12.75 5.28 0.07 -13.11 16 16 N -0.69 -10.43 5.20 -14.20 -0.07 -10.50 16 17 C 0.17 2.51 6.46 -83.65 -0.54 1.97 16 18 C -0.11 -1.79 8.85 -39.40 -0.35 -2.13 16 19 C -0.13 -1.82 10.02 -39.54 -0.40 -2.22 16 20 C 0.06 0.80 7.30 -39.41 -0.29 0.52 16 21 F -0.15 -1.97 17.27 2.25 0.04 -1.93 16 22 C -0.13 -1.51 10.02 -39.54 -0.40 -1.91 16 23 C -0.14 -1.57 9.94 -39.40 -0.39 -1.96 16 24 H 0.07 0.94 7.04 -51.93 -0.37 0.58 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.78 5.56 -51.93 -0.29 0.49 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.59 6.69 -51.93 -0.35 1.25 16 31 H 0.03 0.73 5.83 -51.93 -0.30 0.42 16 32 H 0.04 0.97 6.76 -51.93 -0.35 0.62 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.40 4.82 6.35 -40.82 -0.26 4.56 16 35 H 0.17 3.28 5.39 -52.49 -0.28 3.00 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -31.50 315.32 -7.30 -38.80 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.74 Total: 5.55 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.03 Total: -1.93 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.29 Total: -48.35 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.07 Total: -13.11 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.50 -7.30 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004325262.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds